Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003444.1

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

34128 .. 34655

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003444.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgagttccttagcggtaggcaataagcctcatgttgtctgcattcctttgccatttcagagccacataaaggcaatgcttcagttagctcaactcctccaccacagaggttttcatataacctttgtcaacacagagttcaaccacaggcgctttcttaaatctcttggacccaactctcttgatcactttcctgattttcggtttgaaactattccagatagccttccgagttcagatgaaaaggactcccaagacaccactttggtctttaaatccgtcagaaaacatttattggctccgttccgtaacctcctcaacaaactgaatggcaatataaatcttccggtgactggcattgtctcggatggcttcctgacattcaccatcacagttgccaaagaacttgaaattcctatagcgcagttctttactttggccgcagttggattcatgagcttcaaaatatttcccactttggtggaaaaaggatttgcaccccttaaaggtaatgaaagcattatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

175

Amino Acids

19.6

Weight (kDa)

9.17

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	14, 441
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	1 cut(s)	411
AcuI	CTGAAG	1 cut(s)	65
AfiI	CCNNNNNNNGG	3 cut(s)	70, 353, 506
AgsI	TTSAA	4 cut(s)	142, 209, 410, 463
AleI	CACNNNNGTG	1 cut(s)	479
AluBI	AGCT	2 cut(s)	89, 459
AluI	AGCT	2 cut(s)	89, 459
Alw26I	GTCTC	1 cut(s)	367
AoxI	GGCC	1 cut(s)	438
ApoI	RAATTY	1 cut(s)	411
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	2 cut(s)	153, 424
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	361, 376
AvaII	GGWCC	1 cut(s)	170
BccI	CCATC	2 cut(s)	362, 395
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	367
BfmI	CTRYAG	1 cut(s)	417
BfoI	RGCGCY	1 cut(s)	154
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	2 cut(s)	172, 300
Bpu10I	CCTNAGC	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 353, 506
Bse1I	ACTGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	3 cut(s)	70, 353, 506
BseMI	GCAATG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	2 cut(s)	86, 305
BshFI	GGCC	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	347
BslI	CCNNNNNNNGG	3 cut(s)	70, 353, 506
BsmAI	GTCTC	1 cut(s)	367
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	440
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	2 cut(s)	14, 441
BspANI	GGCC	1 cut(s)	440
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	2 cut(s)	172, 300
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	358
BssMI	GATC	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	394
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	373
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	2 cut(s)	153, 424
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	417
BstXI	CCANNNNNNTGG	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	373
CciI	TCATGA	1 cut(s)	453
CfoI	GCGC	2 cut(s)	153, 424
Cfr13I	GGNCC	1 cut(s)	170
CviAII	CATG	2 cut(s)	32, 454
CviJI	RGCY	8 cut(s)	28, 63, 89, 225, 299, 372, 440, 459
CviKI_1	RGCY	8 cut(s)	28, 63, 89, 225, 299, 372, 440, 459
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
DraI	TTTAAA	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	65
FaeI	CATG	2 cut(s)	35, 457
FaiI	YATR	7 cut(s)	33, 68, 117, 119, 338, 419, 455
FatI	CATG	2 cut(s)	31, 453
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	1 cut(s)	441
GlaI	GCGC	2 cut(s)	152, 423
GluI	GCNGC	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	440
HapII	CCGG	1 cut(s)	347
HhaI	GCGC	2 cut(s)	153, 424
Hin1II	CATG	2 cut(s)	35, 457
Hin6I	GCGC	2 cut(s)	151, 422
HinP1I	GCGC	2 cut(s)	151, 422
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	2 cut(s)	248, 450
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	2 cut(s)	361, 376
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	5 cut(s)	60, 231, 238, 284, 367
Hpy188III	TCNNGA	5 cut(s)	182, 194, 218, 376, 454
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4V	TGCA	2 cut(s)	42, 497
HpyF3I	CTNAG	1 cut(s)	10
Hsp92II	CATG	2 cut(s)	35, 457
HspAI	GCGC	2 cut(s)	151, 422
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	6 cut(s)	133, 207, 231, 339, 360, 389
MaeIII	GTNAC	2 cut(s)	308, 349
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	335
MluCI	AATT	1 cut(s)	411
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	5 cut(s)	39, 101, 107, 323, 326
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	3 cut(s)	159, 273, 504
MslI	CAYNNNNRTG	1 cut(s)	479
MspI	CCGG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	42
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	35, 457
NlaIV	GGNNCC	2 cut(s)	172, 300
NmuCI	GTSAC	1 cut(s)	349
OliI	CACNNNNGTG	1 cut(s)	479
PagI	TCATGA	1 cut(s)	453
PctI	GAATGC	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	450
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PspN4I	GGNNCC	2 cut(s)	172, 300
PspPI	GGNCC	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	479
SaqAI	TTAA	3 cut(s)	159, 273, 504
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	170
SchI	GAGTC	1 cut(s)	242
SetI	ASST	6 cut(s)	91, 112, 125, 315, 461, 511
SfcI	CTRYAG	1 cut(s)	417
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	479
Sse9I	AATT	1 cut(s)	411
SsiI	CCGC	2 cut(s)	14, 441
SspI	AATATT	1 cut(s)	468
TaaI	ACNGT	1 cut(s)	394
TasI	AATT	1 cut(s)	411
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	1 cut(s)	450
Tru1I	TTAA	3 cut(s)	159, 273, 504
Tru9I	TTAA	3 cut(s)	159, 273, 504
TseFI	GTSAC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	4 cut(s)	104, 255, 442, 528
TspGWI	ACGGA	3 cut(s)	268, 291, 296
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	1 cut(s)	411
XmnI	GAANNNNTTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.