Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000949

Physical Location & Seq

Genomic Coordinates Reverse (-)

14659111 .. 14659542

Gene Structure 432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16861.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGACATTGCCGAGCTTGGTAACGCGAGCTTATCACCCGAGTGGGGGCACCAAGGTGTTGGAACGTTGGCTTAGTCATAGCGGGTCGGGTCAGTTGTGTCTCATTTCTGACCTGCCCGTTCCAAGCAAGGAGTTGGGCTGTGTAGTTTGGGCGAAGGCCTGGGTTACACAGTTCCTAAAGCGGAGGGCACAGCGTGAGGCTGGTTTCACAGAGCAGCGATCACTTCCCGCTCCTTGCAGTGGAAGGATAACAGGTCGGTGCCACCCTGATCCGTACTGGCCCGCTATACTCTGCCAATCGGACCTTCACTTTTTTTATCCAAAATTCCAGTCATATTTTTTTCGGCTTCTGCCACTTCAACAAAACATTAATAGCGGAGGAGACCTAGAGAAACCCATTTCTCATAACTTCTGGGTTAAAAATGGGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.19

Weight (kDa)

9.43

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16861 FvH4_3g30530 FvH4_4g10331
prunus_persica	Prupe.2G142600_v2.0.a1 Prupe.5G153300_v2.0.a1
pyrus_communis	pycom11g20890
rosa_chinensis	RchiOBHm_Chr1g0344221 RchiOBHm_Chr2g0147381 RchiOBHm_Chr2g0154091 RchiOBHm_Chr4g0394431 RchiOBHm_Chr4g0421521 RchiOBHm_Chr6g0274071 RchiOBHm_Chr6g0277071
rosa_laevigata	RLG00000014255
rosa_multiflora	Rmu_co8240637.1_g000001 Rmu_co8485309.1_g000002 Rmu_sc0000455.1_g000055 Rmu_sc0001846.1_g000005 Rmu_sc0002281.1_g000023 Rmu_sc0002772.1_g000021 Rmu_sc0003316.1_g000009 Rmu_sc0004915.1_g000013 Rmu_sc0005465.1_g000001 Rmu_sc0007612.1_g000028 Rmu_sc0009481.1_g000011 Rmu_sc0011709.1_g000004 Rmu_sc0012179.1_g000003 Rmu_sc0014556.1_g000001 Rmu_sc0018308.1_g000001 Rmu_sc0033766.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021100 Rroxscaffold_2G00111780 Rroxscaffold_3G00254520 Rroxscaffold_4G00318760 Rroxscaffold_4G00318770 Rroxscaffold_5G00364750 Rroxscaffold_5G00377430 Rroxscaffold_6G00423030 Rroxscaffold_7G00203610 Rroxscaffold_7G00203960
rosa_rugosa	Rorug01G0056200 Rorug07G0209200
rosa_samantha	Rh1AG072800 Rh1BG059400 Rh1BG092000 Rh1CG071900 Rh2BG331300 Rh2BG512600 Rh2BG515900 Rh2BG517600 Rh2DG120700 Rh2DG420800 Rh2DG433100 Rh2DG524200 Rh2DG529300 Rh4AG003200 Rh4BG121400 Rh4CG032100 Rh4CG052300 Rh5BG244400 Rh5CG363100 Rh6AG117400 Rh7BG296900 Rh7BG452300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	120
AccB1I	GGYRCC	2 cut(s)	47, 258
AccBSI	CCGCTC	1 cut(s)	230
AccII	CGCG	1 cut(s)	25
AciI	CCGC	5 cut(s)	81, 181, 228, 282, 375
AclI	AACGTT	1 cut(s)	64
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	323
AdeI	CACNNNGTG	1 cut(s)	194
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	3 cut(s)	43, 44, 239
AgsI	TTSAA	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	158
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AleI	CACNNNNGTG	2 cut(s)	39, 53
AluBI	AGCT	2 cut(s)	15, 29
AluI	AGCT	2 cut(s)	15, 29
Alw26I	GTCTC	2 cut(s)	104, 375
AlwI	GGATC	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	2 cut(s)	156, 278
ApeKI	GCWGC	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	323
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AseI	ATTAAT	1 cut(s)	369
AspS9I	GGNCC	3 cut(s)	279, 301, 426
AsuHPI	GGTGA	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	301, 426
BaeGI	GKGCMC	2 cut(s)	50, 190
BanI	GGYRCC	2 cut(s)	47, 258
BbvI	GCAGC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	104, 375
BfaI	CTAG	1 cut(s)	386
BfuAI	ACCTGC	1 cut(s)	120
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	2 cut(s)	301, 426
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	3 cut(s)	279, 301, 426
BmiI	GGNNCC	3 cut(s)	49, 260, 427
BmrFI	CCNGG	1 cut(s)	160
BsaI	GGTCTC	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	51, 159
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 44, 239
Bse1I	ACTGG	2 cut(s)	281, 328
Bse3DI	GCAATG	1 cut(s)	5
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	2 cut(s)	51, 159
BseLI	CCNNNNNNNGG	3 cut(s)	43, 44, 239
BseMI	GCAATG	1 cut(s)	5
BseNI	ACTGG	2 cut(s)	281, 328
BseRI	GAGGAG	1 cut(s)	393
BseSI	GKGCMC	2 cut(s)	50, 190
BseXI	GCAGC	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	158, 280
BshNI	GGYRCC	2 cut(s)	47, 258
BsiHKCI	CYCGRG	1 cut(s)	37
BslI	CCNNNNNNNGG	3 cut(s)	43, 44, 239
BsmAI	GTCTC	2 cut(s)	104, 375
BsnI	GGCC	2 cut(s)	158, 280
Bso31I	GGTCTC	1 cut(s)	375
BsoBI	CYCGRG	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	50, 190
Bsp143I	GATC	2 cut(s)	218, 268
BspACI	CCGC	5 cut(s)	81, 181, 228, 282, 375
BspANI	GGCC	2 cut(s)	158, 280
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	3 cut(s)	49, 260, 427
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	2 cut(s)	47, 258
BspTNI	GGTCTC	1 cut(s)	375
BsrBI	CCGCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	281, 328
BssECI	CCNNGG	2 cut(s)	51, 159
BssMI	GATC	2 cut(s)	218, 268
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	27, 282
BstDEI	CTNAG	1 cut(s)	71
BstFNI	CGCG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	221, 271
BstMAI	GTCTC	2 cut(s)	104, 375
BstMBI	GATC	2 cut(s)	218, 268
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	158
BstSLI	GKGCMC	2 cut(s)	50, 190
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	158, 280
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	244
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	27, 282
Cfr13I	GGNCC	3 cut(s)	279, 301, 426
Csp6I	GTAC	1 cut(s)	274
CviJI	RGCY	8 cut(s)	15, 29, 70, 138, 158, 200, 280, 346
CviKI_1	RGCY	8 cut(s)	15, 29, 70, 138, 158, 200, 280, 346
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	2 cut(s)	220, 270
DpnII	GATC	2 cut(s)	218, 268
DraIII	CACNNNGTG	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	51
Eco147I	AGGCCT	1 cut(s)	158
Eco31I	GGTCTC	1 cut(s)	375
Eco47I	GGWCC	2 cut(s)	301, 426
Eco88I	CYCGRG	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaiI	YATR	4 cut(s)	78, 287, 334, 405
FauI	CCCGC	3 cut(s)	74, 235, 289
Fnu4HI	GCNGC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	215
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	158, 280
HphI	GGTGA	1 cut(s)	26
Hpy188I	TCNGA	2 cut(s)	109, 301
Hpy188III	TCNNGA	1 cut(s)	429
HpyAV	CCTTC	3 cut(s)	148, 237, 314
HpyCH4III	ACNGT	1 cut(s)	171
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	237
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	218, 268
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	9 cut(s)	125, 145, 172, 186, 237, 262, 279, 341, 397
Lsp1109I	GCAGC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	2 cut(s)	19, 163
MalI	GATC	2 cut(s)	220, 270
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	2 cut(s)	218, 268
MhlI	GDGCHC	2 cut(s)	50, 190
MluCI	AATT	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	3 cut(s)	177, 190, 371
MseI	TTAA	2 cut(s)	369, 417
MslI	CAYNNNNRTG	2 cut(s)	39, 53
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	25
NdeII	GATC	2 cut(s)	218, 268
NlaIV	GGNNCC	3 cut(s)	49, 260, 427
NmeAIII	GCCGAG	1 cut(s)	36
OliI	CACNNNNGTG	2 cut(s)	39, 53
PceI	AGGCCT	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	426
PshBI	ATTAAT	1 cut(s)	369
Psp1406I	AACGTT	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	3 cut(s)	49, 260, 427
PspPI	GGNCC	3 cut(s)	279, 301, 426
PspPPI	RGGWCCY	1 cut(s)	426
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	2 cut(s)	39, 53
SaqAI	TTAA	2 cut(s)	369, 417
SatI	GCNGC	1 cut(s)	215
Sau3AI	GATC	2 cut(s)	218, 268
Sau96I	GGNCC	3 cut(s)	279, 301, 426
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	2 cut(s)	50, 190
SetI	ASST	8 cut(s)	17, 31, 57, 67, 114, 256, 306, 387
SinI	GGWCC	2 cut(s)	301, 426
SmiMI	CAYNNNNRTG	2 cut(s)	39, 53
Sse9I	AATT	1 cut(s)	323
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	5 cut(s)	81, 181, 228, 282, 375
SspMI	CTAG	1 cut(s)	386
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	171
TaiI	ACGT	1 cut(s)	67
TasI	AATT	1 cut(s)	323
Tru1I	TTAA	2 cut(s)	369, 417
Tru9I	TTAA	2 cut(s)	369, 417
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	1 cut(s)	214
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	301, 426
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	1 cut(s)	323
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.