Rmu_sc0012179.1_g000003

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012179.1
OG0000949
Physical Location & Seq
Forward (+)
3151 .. 4812
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012179.1_g000003.1.cds

Sequence Viewer

Length: 408 bp
atgttatgggggcatcttggcaagggcggaaaggtggcttcccggtggcggatttgcgacttccggataccgccgcgtagcctgaacatagggctacacgatgcatgtctcgttgatgtccatgttcggaacaccatggttcatatgtactgttgctgcagtggagggattgaaagtgcacgaaaggtgtttgatgaaatgcctaactgggactctgtttcgtggagcgcgatgattggagggtatgtgagggtggggtggtctagtgatgcggtggagttgtttaaggagatgcagatggcgggagtgaggacggatgagattactatggtttcggttttgtctgcgtgtaccgatttgggtgcgcttgagaaggagaagagagagagagagaagcagaaaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

135

Amino Acids

15.22

Weight (kDa)

8.24

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 76, 230
AccIII TCCGGA 1 cut(s) 63
AciI CCGC 6 cut(s) 27, 49, 71, 74, 272, 302
AfaI GTAC 2 cut(s) 149, 352
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 1 cut(s) 173
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 113
Alw44I GTGCAC 1 cut(s) 177
Aor13HI TCCGGA 1 cut(s) 63
ApaLI GTGCAC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 156
AspLEI GCGC 2 cut(s) 230, 367
AsuC2I CCSGG 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 292
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciVI GTATCC 1 cut(s) 60
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 157
BfuI GTATCC 1 cut(s) 60
BisI GCNGC 2 cut(s) 74, 157
BlsI GCNGC 2 cut(s) 75, 158
Bme1390I CCNGG 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 43
BmrI ACTGGG 1 cut(s) 217
BmsI GCATC 4 cut(s) 22, 91, 259, 282
BmuI ACTGGG 1 cut(s) 217
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 212
BseAI TCCGGA 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 1 cut(s) 143
Bsh1236I CGCG 2 cut(s) 76, 230
BsiHKAI GWGCWC 1 cut(s) 181
BsiSI CCGG 2 cut(s) 43, 64
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 181
Bsp13I TCCGGA 1 cut(s) 63
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 6 cut(s) 27, 49, 71, 74, 272, 302
BspEI TCCGGA 1 cut(s) 63
BspFNI CGCG 2 cut(s) 76, 230
BspMAI CTGCAG 1 cut(s) 161
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 374
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 322
BstFNI CGCG 2 cut(s) 76, 230
BstHHI GCGC 2 cut(s) 230, 367
BstMAI GTCTC 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 181
BstUI CGCG 2 cut(s) 76, 230
BstV1I GCAGC 1 cut(s) 143
BsuI GTATCC 1 cut(s) 60
BtgI CCRYGG 1 cut(s) 135
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 166
CfoI GCGC 2 cut(s) 230, 367
Csp6I GTAC 2 cut(s) 148, 351
CviAII CATG 3 cut(s) 105, 122, 136
CviJI RGCY 3 cut(s) 38, 81, 94
CviKI_1 RGCY 3 cut(s) 38, 81, 94
CviQI GTAC 2 cut(s) 148, 351
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
EciI GGCGGA 2 cut(s) 42, 64
Eco130I CCWWGG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 135
EcoT22I ATGCAT 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 3 cut(s) 108, 125, 139
FaiI YATR 9 cut(s) 7, 89, 106, 123, 137, 144, 146, 246, 329
FaqI GGGAC 1 cut(s) 224
FatI CATG 3 cut(s) 104, 121, 135
FauI CCCGC 1 cut(s) 295
FauNDI CATATG 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 74, 157
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 2 cut(s) 74, 157
FspBI CTAG 1 cut(s) 264
GlaI GCGC 2 cut(s) 229, 366
GluI GCNGC 2 cut(s) 74, 157
HapII CCGG 2 cut(s) 43, 64
HhaI GCGC 2 cut(s) 230, 367
Hin1II CATG 3 cut(s) 108, 125, 139
Hin6I GCGC 2 cut(s) 228, 365
HinP1I GCGC 2 cut(s) 228, 365
HinfI GANTC 1 cut(s) 212
HpaII CCGG 2 cut(s) 43, 64
Hpy166II GTNNAC 2 cut(s) 179, 351
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 2 cut(s) 179, 351
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 4 cut(s) 104, 159, 179, 295
Hsp92II CATG 3 cut(s) 108, 125, 139
HspAI GCGC 2 cut(s) 228, 365
Kpn2I TCCGGA 1 cut(s) 63
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 4 cut(s) 56, 77, 95, 193
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 4 cut(s) 22, 91, 259, 282
MaeI CTAG 1 cut(s) 264
MboII GAAGA 1 cut(s) 391
MhlI GDGCHC 1 cut(s) 181
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 4 cut(s) 158, 233, 243, 303
Mph1103I ATGCAT 1 cut(s) 106
MroI TCCGGA 1 cut(s) 63
MseI TTAA 1 cut(s) 285
MspI CCGG 2 cut(s) 43, 64
MspR9I CCNGG 1 cut(s) 43
MvnI CGCG 2 cut(s) 76, 230
NciI CCSGG 1 cut(s) 43
NcoI CCATGG 1 cut(s) 135
NdeI CATATG 1 cut(s) 144
NlaIII CATG 3 cut(s) 108, 125, 139
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PkrI GCNGC 2 cut(s) 75, 158
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PstI CTGCAG 1 cut(s) 161
RsaI GTAC 2 cut(s) 149, 352
RsaNI GTAC 2 cut(s) 148, 351
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 2 cut(s) 74, 157
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 1 cut(s) 181
SetI ASST 2 cut(s) 36, 189
SfaNI GCATC 4 cut(s) 22, 91, 259, 282
SfcI CTRYAG 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SsiI CCGC 6 cut(s) 27, 49, 71, 74, 272, 302
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 152
TatI WGTACW 1 cut(s) 147
TauI GCSGC 1 cut(s) 76
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 166
TseI GCWGC 1 cut(s) 156
TspDTI ATGAA 2 cut(s) 131, 210
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 1 cut(s) 166
VneI GTGCAC 1 cut(s) 177
XceI RCATGY 1 cut(s) 108
XspI CTAG 1 cut(s) 264
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.