RchiOBHm_Chr4g0394431

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000949
Physical Location & Seq
Reverse (-)
10077351 .. 10077669
319 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36693

Sequence Viewer

Length: 150 bp
ATGTTGTGGTGGCATCTTGGCAAGGGCGGAAAGGTGGCTTCCCGACGTCGGATTTGCGACTTCCGGATACCGCCGCGTAGCCTGAACATAGGGCTACACGATGCATGTCTCGGTTGGGCCTTGCCATGTCTTGTGGATGTCCCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

49

Amino Acids

5.55

Weight (kDa)

9.89

Isoelectric Point (pI)

84.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 49
AccII CGCG 1 cut(s) 76
AccIII TCCGGA 1 cut(s) 63
AciI CCGC 3 cut(s) 27, 71, 74
AcyI GRCGYC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 113
Aor13HI TCCGGA 1 cut(s) 63
AoxI GGCC 1 cut(s) 117
ArsI GACNNNNNNTTYG 2 cut(s) 36, 68
AspS9I GGNCC 1 cut(s) 117
BciVI GTATCC 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 113
BfuI GTATCC 1 cut(s) 60
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 117
BmsI GCATC 2 cut(s) 22, 91
BsaHI GRCGYC 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 48
BseAI TCCGGA 1 cut(s) 63
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 76
BshFI GGCC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 64
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 1 cut(s) 119
Bsp13I TCCGGA 1 cut(s) 63
BspACI CCGC 3 cut(s) 27, 71, 74
BspANI GGCC 1 cut(s) 119
BspEI TCCGGA 1 cut(s) 63
BspFNI CGCG 1 cut(s) 76
BssNI GRCGYC 1 cut(s) 46
BstACI GRCGYC 1 cut(s) 46
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 108
BstUI CGCG 1 cut(s) 76
BsuI GTATCC 1 cut(s) 60
BsuRI GGCC 1 cut(s) 119
BtsCI GGATG 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 117
CviAII CATG 2 cut(s) 105, 126
CviJI RGCY 4 cut(s) 38, 81, 94, 119
CviKI_1 RGCY 4 cut(s) 38, 81, 94, 119
EciI GGCGGA 1 cut(s) 42
EcoT22I ATGCAT 1 cut(s) 106
FaeI CATG 2 cut(s) 108, 129
FaiI YATR 3 cut(s) 89, 106, 127
FaqI GGGAC 1 cut(s) 125
FatI CATG 2 cut(s) 104, 125
Fnu4HI GCNGC 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 74
GluI GCNGC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 46
Hin1II CATG 2 cut(s) 108, 129
HpaII CCGG 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 2 cut(s) 42, 64
Hpy99I CGWCG 2 cut(s) 48, 51
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 46
Hsp92I GRCGYC 1 cut(s) 46
Hsp92II CATG 2 cut(s) 108, 129
Kpn2I TCCGGA 1 cut(s) 63
LpnPI CCDG 2 cut(s) 77, 95
LweI GCATC 2 cut(s) 22, 91
MaeII ACGT 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 29
Mph1103I ATGCAT 1 cut(s) 106
MroI TCCGGA 1 cut(s) 63
MspI CCGG 1 cut(s) 64
MvnI CGCG 1 cut(s) 76
NlaIII CATG 2 cut(s) 108, 129
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 1 cut(s) 108
PkrI GCNGC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 117
SatI GCNGC 1 cut(s) 74
Sau96I GGNCC 1 cut(s) 117
SetI ASST 2 cut(s) 36, 49
SfaNI GCATC 2 cut(s) 22, 91
SsiI CCGC 3 cut(s) 27, 71, 74
TaiI ACGT 1 cut(s) 49
TauI GCSGC 1 cut(s) 76
XceI RCATGY 1 cut(s) 108
ZraI GACGTC 1 cut(s) 47
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.