Rh5BG244400

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000949
Physical Location & Seq
Forward (+)
29602038 .. 29604706
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG244400.1

Sequence Viewer

Length: 1149 bp
ATGCCAGCTTATTTCATGGTTGGCACTGTCCCGGTCTATCTACCTAACACTGAGAGTATGATGGTGACCTCTATTGAGGAGAGGGATGAAGACGAAGCTTCAGTGGCTCGAGAGTCCACCACCTCTTCACAAAGAGTTATCATACAAGATGGTCAAAACATCGACCCAAAGAAAATAGCTAAAGAGGTAATCAAGGCCCTTGCTGCACCATCAAAGCATGCAAGGAGACCAAAGGGTGCTAGAAACAAAGAGTATCCGGTTTTCAAAGATGACTCTTACTCAGGGCCAGTCACCCGCAACAAGGCTCACAAAATGACGCCTAGAAATGCTTCTTCAGTGGGTACTGCATCAGAAGATGAGGGGCAGACGTGGAAAGATAATCCACTCTATGAGACATCTGTAAAAGAAAGAGTCTCCCAGTTGCAAACTGACGGCTCCTCACAGGGTTCAGAAAGCAATGAAAGTAGAGAGCCTGATGGTGCACAAGTGCTGGTAGCTAACCCGCAAAACCCAGAAGAGCAGATGCAGGAGTTGCAGAGAAGGTTAGCACAACTTGAGCTTGAGGCTATCCGAAGGCAAGAGGAAGAGGCCAAGAGGCGTGCTGAAATAGAAGCAGCAGCAGCCAAAAAATTGGAAGAGAAGGAGGCTGAAGTAGCTGCATTGGTAGCACAACTAGCCTTAATGGCCAATAACAAGGACAGGGGCAAAGAGATGTTCCAATACACAGAACGGAAGCATGAGGAACGTGGAGATTCTTCAGCTGAACAGCAAGAGGATGGTGAGGAAGTGCTTGAGTGTTGCATGGTCACCATTGAGGGCCCTAAGGGATCAGACACCGAGGCGGACGAGGAAAGCTCTGATAAATCGGAACCCGAGGTTAATAAGATCACTCTACGCTCTGGTTTGAGCATTCCAGGGGCTGACAAGCAGAAAGAAGTGAATGAACCATCTGATAGCCCGAAAAAGTTAAAGTCGAAAAACGTTCCAGAGAACACGACAGAAAAGACTGGAAAAGCCTCGACGTCAAAGAACTCTAAACCGGAGCAGAACGAGGGCCGAATAAAGGAGTCATCACAGAAATACAGATATAATGTGTTGGCTCACCTGAAACGTGTCCCGGCTACATTGAGTGTAACATCCCGAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

382

Amino Acids

42.45

Weight (kDa)

5.34

Isoelectric Point (pI)

61.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1025
AciI CCGC 3 cut(s) 295, 503, 842
AclI AACGTT 1 cut(s) 981
AclWI GGATC 1 cut(s) 835
AcoI YGGCCR 1 cut(s) 684
AcuI CTGAAG 4 cut(s) 84, 318, 669, 741
AcyI GRCGYC 2 cut(s) 317, 1022
AfaI GTAC 1 cut(s) 343
AfiI CCNNNNNNNGG 2 cut(s) 301, 1063
AflIII ACRYGT 1 cut(s) 1111
AgsI TTSAA 1 cut(s) 265
AjiI CACGTC 1 cut(s) 369
AjnI CCWGG 1 cut(s) 913
AluBI AGCT 8 cut(s) 8, 98, 179, 497, 559, 656, 761, 855
AluI AGCT 8 cut(s) 8, 98, 179, 497, 559, 656, 761, 855
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 3 cut(s) 220, 386, 418
Alw44I GTGCAC 1 cut(s) 480
AlwI GGATC 1 cut(s) 835
AlwNI CAGNNNCTG 1 cut(s) 920
Ama87I CYCGRG 2 cut(s) 108, 872
AoxI GGCC 6 cut(s) 195, 284, 588, 684, 817, 1054
ApaI GGGCCC 1 cut(s) 821
ApaLI GTGCAC 1 cut(s) 480
ApeKI GCWGC 5 cut(s) 203, 614, 617, 620, 656
Asp700I GAANNNNTTC 1 cut(s) 328
AspS9I GGNCC 5 cut(s) 196, 284, 817, 818, 1054
AsuC2I CCSGG 2 cut(s) 32, 1118
AsuHPI GGTGA 5 cut(s) 76, 283, 791, 799, 1094
AvaI CYCGRG 2 cut(s) 108, 872
AxyI CCTNAGG 1 cut(s) 822
BaeGI GKGCMC 2 cut(s) 484, 821
BalI TGGCCA 1 cut(s) 686
BanII GRGCYC 1 cut(s) 821
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 484
BbvI GCAGC 5 cut(s) 190, 626, 629, 632, 643
BccI CCATC 6 cut(s) 55, 143, 217, 470, 770, 955
BceAI ACGGC 1 cut(s) 448
BciT130I CCWGG 1 cut(s) 915
BciVI GTATCC 1 cut(s) 264
BcnI CCSGG 2 cut(s) 32, 1118
BcoDI GTCTC 3 cut(s) 220, 386, 418
BfaI CTAG 3 cut(s) 240, 321, 674
BfuI GTATCC 1 cut(s) 264
BglI GCCNNNNNGGC 1 cut(s) 683
BisI GCNGC 5 cut(s) 204, 615, 618, 621, 657
BlsI GCNGC 5 cut(s) 205, 616, 619, 622, 658
Bme1390I CCNGG 3 cut(s) 32, 915, 1118
BmeT110I CYCGRG 2 cut(s) 108, 872
BmgBI CACGTC 1 cut(s) 369
BmgT120I GGNCC 5 cut(s) 196, 284, 817, 818, 1054
BmiI GGNNCC 3 cut(s) 436, 819, 870
BmrFI CCNGG 3 cut(s) 32, 915, 1118
BmrI ACTGGG 1 cut(s) 412
BmsI GCATC 2 cut(s) 356, 513
BmuI ACTGGG 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 96
BplI GAGNNNNNCTC 2 cut(s) 839, 871
BpuEI CTTGAG 3 cut(s) 575, 581, 812
BpuMI CCSGG 2 cut(s) 32, 1118
BsaHI GRCGYC 2 cut(s) 317, 1022
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 3 cut(s) 837, 873, 914
BsaWI WCCGGW 2 cut(s) 256, 1039
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 1063
Bse1I ACTGG 3 cut(s) 287, 418, 1012
Bse21I CCTNAGG 1 cut(s) 822
Bse3DI GCAATG 1 cut(s) 463
BseBI CCWGG 1 cut(s) 915
BseDI CCNNGG 3 cut(s) 837, 873, 914
BseGI GGATG 3 cut(s) 91, 781, 1136
BseLI CCNNNNNNNGG 2 cut(s) 301, 1063
BseMI GCAATG 1 cut(s) 463
BseMII CTCAG 2 cut(s) 42, 294
BseNI ACTGG 3 cut(s) 287, 418, 1012
BseRI GAGGAG 2 cut(s) 92, 427
BseSI GKGCMC 2 cut(s) 484, 821
BseXI GCAGC 5 cut(s) 190, 626, 629, 632, 643
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 6 cut(s) 197, 286, 590, 686, 819, 1056
BsiHKAI GWGCWC 1 cut(s) 484
BsiHKCI CYCGRG 2 cut(s) 108, 872
BsiSI CCGG 4 cut(s) 32, 257, 1040, 1118
BslFI GGGAC 2 cut(s) 14, 1100
BslI CCNNNNNNNGG 2 cut(s) 301, 1063
BsmAI GTCTC 3 cut(s) 220, 386, 418
BsmFI GGGAC 2 cut(s) 14, 1100
BsmI GAATGC 1 cut(s) 909
BsnI GGCC 6 cut(s) 197, 286, 590, 686, 819, 1056
Bso31I GGTCTC 1 cut(s) 220
BsoBI CYCGRG 2 cut(s) 108, 872
Bsp120I GGGCCC 1 cut(s) 817
Bsp1286I GDGCHC 2 cut(s) 484, 821
Bsp143I GATC 2 cut(s) 827, 885
BspACI CCGC 3 cut(s) 295, 503, 842
BspANI GGCC 6 cut(s) 197, 286, 590, 686, 819, 1056
BspCNI CTCAG 2 cut(s) 43, 293
BspLI GGNNCC 3 cut(s) 436, 819, 870
BspPI GGATC 1 cut(s) 835
BspQI GCTCTTC 1 cut(s) 510
BspTNI GGTCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 463
BsrI ACTGG 3 cut(s) 287, 418, 1012
BssECI CCNNGG 3 cut(s) 837, 873, 914
BssMI GATC 2 cut(s) 827, 885
BssNI GRCGYC 2 cut(s) 317, 1022
Bst2UI CCWGG 1 cut(s) 915
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 4 cut(s) 130, 510, 579, 630
BstACI GRCGYC 2 cut(s) 317, 1022
BstAPI GCANNNNNTGC 1 cut(s) 532
BstC8I GCNNGC 3 cut(s) 6, 219, 600
BstDEI CTNAG 3 cut(s) 51, 280, 822
BstEII GGTNACC 2 cut(s) 64, 805
BstF5I GGATG 3 cut(s) 91, 781, 1136
BstKTI GATC 2 cut(s) 830, 888
BstMAI GTCTC 3 cut(s) 220, 386, 418
BstMBI GATC 2 cut(s) 827, 885
BstMWI GCNNNNNNNGC 8 cut(s) 104, 203, 532, 620, 653, 665, 674, 683
BstNI CCWGG 1 cut(s) 915
BstNSI RCATGY 1 cut(s) 221
BstPI GGTNACC 2 cut(s) 64, 805
BstSCI CCNGG 3 cut(s) 30, 913, 1116
BstSLI GKGCMC 2 cut(s) 484, 821
BstV1I GCAGC 5 cut(s) 190, 626, 629, 632, 643
BstV2I GAAGAC 1 cut(s) 96
BstXI CCANNNNNNTGG 1 cut(s) 631
Bsu36I CCTNAGG 1 cut(s) 822
BsuI GTATCC 1 cut(s) 264
BsuRI GGCC 6 cut(s) 197, 286, 590, 686, 819, 1056
BtrI CACGTC 1 cut(s) 369
BtsCI GGATG 3 cut(s) 91, 781, 1136
BtsIMutI CAGTG 4 cut(s) 24, 48, 108, 342
Cac8I GCNNGC 3 cut(s) 6, 219, 600
CaiI CAGNNNCTG 1 cut(s) 920
Cfr13I GGNCC 5 cut(s) 196, 284, 817, 818, 1054
CseI GACGC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 342
CviAII CATG 4 cut(s) 16, 218, 737, 802
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 3 cut(s) 51, 280, 822
DpnI GATC 2 cut(s) 829, 887
DpnII GATC 2 cut(s) 827, 885
EaeI YGGCCR 1 cut(s) 684
Eam1104I CTCTTC 4 cut(s) 130, 510, 579, 630
EarI CTCTTC 4 cut(s) 130, 510, 579, 630
EciI GGCGGA 1 cut(s) 857
Eco24I GRGCYC 1 cut(s) 821
Eco31I GGTCTC 1 cut(s) 220
Eco57I CTGAAG 4 cut(s) 84, 318, 669, 741
Eco81I CCTNAGG 1 cut(s) 822
Eco88I CYCGRG 2 cut(s) 108, 872
Eco91I GGTNACC 2 cut(s) 64, 805
EcoO109I RGGNCCY 3 cut(s) 196, 817, 818
EcoO65I GGTNACC 2 cut(s) 64, 805
EcoRII CCWGG 1 cut(s) 913
EcoT38I GRGCYC 1 cut(s) 821
FaeI CATG 4 cut(s) 19, 221, 740, 805
FaiI YATR 8 cut(s) 17, 59, 143, 219, 390, 738, 803, 1089
FaqI GGGAC 2 cut(s) 14, 1100
FatI CATG 4 cut(s) 15, 217, 736, 801
FauI CCCGC 2 cut(s) 302, 510
Fnu4HI GCNGC 5 cut(s) 204, 615, 618, 621, 657
FokI GGATG 3 cut(s) 98, 788, 1123
FriOI GRGCYC 1 cut(s) 821
Fsp4HI GCNGC 5 cut(s) 204, 615, 618, 621, 657
FspBI CTAG 3 cut(s) 240, 321, 674
GluI GCNGC 5 cut(s) 204, 615, 618, 621, 657
HaeIII GGCC 6 cut(s) 197, 286, 590, 686, 819, 1056
HapII CCGG 4 cut(s) 32, 257, 1040, 1118
HgaI GACGC 1 cut(s) 325
Hin1I GRCGYC 2 cut(s) 317, 1022
Hin1II CATG 4 cut(s) 19, 221, 740, 805
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 5 cut(s) 113, 272, 411, 752, 1067
HpaII CCGG 4 cut(s) 32, 257, 1040, 1118
HphI GGTGA 5 cut(s) 76, 283, 791, 799, 1094
Hpy166II GTNNAC 2 cut(s) 117, 482
Hpy188I TCNGA 7 cut(s) 352, 451, 572, 832, 859, 868, 952
Hpy188III TCNNGA 3 cut(s) 110, 986, 1140
Hpy8I GTNNAC 2 cut(s) 117, 482
Hpy99I CGWCG 1 cut(s) 1024
HpyAV CCTTC 3 cut(s) 534, 567, 634
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 5 cut(s) 368, 745, 981, 1022, 1111
HpyCH4V TGCA 9 cut(s) 206, 221, 347, 424, 482, 526, 535, 659, 801
HpyF10VI GCNNNNNNNGC 8 cut(s) 104, 203, 532, 620, 653, 665, 674, 683
HpyF3I CTNAG 3 cut(s) 51, 280, 822
HpySE526I ACGT 5 cut(s) 368, 745, 981, 1022, 1111
Hsp92I GRCGYC 2 cut(s) 317, 1022
Hsp92II CATG 4 cut(s) 19, 221, 740, 805
Kzo9I GATC 2 cut(s) 827, 885
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 2 cut(s) 440, 1042
Lsp1109I GCAGC 5 cut(s) 190, 626, 629, 632, 643
LweI GCATC 2 cut(s) 356, 513
MaeI CTAG 3 cut(s) 240, 321, 674
MaeII ACGT 5 cut(s) 368, 745, 981, 1022, 1111
MaeIII GTNAC 4 cut(s) 64, 289, 805, 1132
MalI GATC 2 cut(s) 829, 887
MboI GATC 2 cut(s) 827, 885
MboII GAAGA 8 cut(s) 101, 117, 324, 365, 527, 596, 647, 747
MhlI GDGCHC 2 cut(s) 484, 821
MlsI TGGCCA 1 cut(s) 686
MluCI AATT 1 cut(s) 629
MluNI TGGCCA 1 cut(s) 686
MlyI GAGTC 4 cut(s) 122, 266, 420, 1076
Mox20I TGGCCA 1 cut(s) 686
MroXI GAANNNNTTC 1 cut(s) 328
MscI TGGCCA 1 cut(s) 686
MseI TTAA 3 cut(s) 680, 879, 968
Msp20I TGGCCA 1 cut(s) 686
MspA1I CMGCKG 1 cut(s) 761
MspI CCGG 4 cut(s) 32, 257, 1040, 1118
MspR9I CCNGG 3 cut(s) 32, 915, 1118
Mva1269I GAATGC 1 cut(s) 909
MvaI CCWGG 1 cut(s) 915
MwoI GCNNNNNNNGC 8 cut(s) 104, 203, 532, 620, 653, 665, 674, 683
NciI CCSGG 2 cut(s) 32, 1118
NdeII GATC 2 cut(s) 827, 885
NlaIII CATG 4 cut(s) 19, 221, 740, 805
NlaIV GGNNCC 3 cut(s) 436, 819, 870
NmuCI GTSAC 3 cut(s) 64, 289, 805
NspI RCATGY 1 cut(s) 221
PaeI GCATGC 1 cut(s) 221
PaeR7I CTCGAG 1 cut(s) 108
PciSI GCTCTTC 1 cut(s) 510
PctI GAATGC 1 cut(s) 909
PdmI GAANNNNTTC 1 cut(s) 328
PfeI GAWTC 1 cut(s) 752
PkrI GCNGC 5 cut(s) 205, 616, 619, 622, 658
PleI GAGTC 4 cut(s) 121, 266, 419, 1075
PpsI GAGTC 4 cut(s) 121, 266, 419, 1075
Psp1406I AACGTT 1 cut(s) 981
Psp6I CCWGG 1 cut(s) 913
PspEI GGTNACC 2 cut(s) 64, 805
PspGI CCWGG 1 cut(s) 913
PspN4I GGNNCC 3 cut(s) 436, 819, 870
PspOMI GGGCCC 1 cut(s) 817
PspPI GGNCC 5 cut(s) 196, 284, 817, 818, 1054
PstNI CAGNNNCTG 1 cut(s) 920
PvuII CAGCTG 1 cut(s) 761
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 3 cut(s) 680, 879, 968
SatI GCNGC 5 cut(s) 204, 615, 618, 621, 657
Sau3AI GATC 2 cut(s) 827, 885
Sau96I GGNCC 5 cut(s) 196, 284, 817, 818, 1054
SchI GAGTC 4 cut(s) 122, 266, 420, 1076
ScrFI CCNGG 3 cut(s) 32, 915, 1118
SduI GDGCHC 2 cut(s) 484, 821
SfaNI GCATC 2 cut(s) 356, 513
Sfr274I CTCGAG 1 cut(s) 108
SlaI CTCGAG 1 cut(s) 108
SmlI CTYRAG 4 cut(s) 108, 554, 560, 791
SmoI CTYRAG 4 cut(s) 108, 554, 560, 791
SphI GCATGC 1 cut(s) 221
Sse9I AATT 1 cut(s) 629
SsiI CCGC 3 cut(s) 295, 503, 842
SspMI CTAG 3 cut(s) 240, 321, 674
StyD4I CCNGG 3 cut(s) 30, 913, 1116
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 5 cut(s) 371, 748, 984, 1025, 1114
TaqI TCGA 4 cut(s) 109, 162, 974, 1019
TasI AATT 1 cut(s) 629
TfiI GAWTC 1 cut(s) 752
Tru1I TTAA 3 cut(s) 680, 879, 968
Tru9I TTAA 3 cut(s) 680, 879, 968
TscAI CASTG 4 cut(s) 31, 55, 108, 342
TseFI GTSAC 3 cut(s) 64, 289, 805
TseI GCWGC 5 cut(s) 203, 614, 617, 620, 656
Tsp45I GTSAC 3 cut(s) 64, 289, 805
TspDTI ATGAA 4 cut(s) 4, 102, 474, 957
TspGWI ACGGA 1 cut(s) 745
TspRI CASTG 4 cut(s) 31, 55, 108, 342
VneI GTGCAC 1 cut(s) 480
XceI RCATGY 1 cut(s) 221
XhoI CTCGAG 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 328
XspI CTAG 3 cut(s) 240, 321, 674
ZraI GACGTC 1 cut(s) 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.