Rroxscaffold_4G00318760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000949
Physical Location & Seq
Reverse (-)
46118312 .. 46119751
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00318760.1

Sequence Viewer

Length: 258 bp
ATGGTGTGGAAGTGCTTGGAGTGTTGCATGGTCACCGTCGAGGGCCCTAAGGGATCGGACACCGAGGCGGATGACGAGAGCTCGGATAAGTCGAACCCGAGGTTAACAAGATCACTCTACGCTCGGTTTGAGCATTCCGGAGCCGACAAGCGAAAGAGGACCTCCGAGCTAAAAAATGGAAATGAACTCATAAATGGAAAGAGGAGCTTGCGAACATTGAGGGGAGCAAAGATGAAGAACAATGAGCCACAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.63

Weight (kDa)

8.88

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 137
AciI CCGC 1 cut(s) 68
AclWI GGATC 1 cut(s) 61
AluBI AGCT 3 cut(s) 81, 169, 207
AluI AGCT 3 cut(s) 81, 169, 207
Alw21I GWGCWC 1 cut(s) 83
AlwI GGATC 1 cut(s) 61
Ama87I CYCGRG 1 cut(s) 97
Aor13HI TCCGGA 1 cut(s) 137
AoxI GGCC 1 cut(s) 43
ApaI GGGCCC 1 cut(s) 47
AspS9I GGNCC 3 cut(s) 43, 44, 159
AsuHPI GGTGA 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 97
AvaII GGWCC 1 cut(s) 159
AxyI CCTNAGG 1 cut(s) 48
BaeGI GKGCMC 1 cut(s) 47
BanII GRGCYC 2 cut(s) 47, 83
Bbv12I GWGCWC 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 3 cut(s) 43, 44, 159
BmiI GGNNCC 2 cut(s) 45, 142
BsaJI CCNNGG 2 cut(s) 63, 98
BsaWI WCCGGW 1 cut(s) 137
Bse21I CCTNAGG 1 cut(s) 48
BseAI TCCGGA 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 63, 98
BseGI GGATG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 47
BshFI GGCC 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 1 cut(s) 138
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 97
Bsp120I GGGCCC 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 47, 83
Bsp13I TCCGGA 1 cut(s) 137
Bsp143I GATC 2 cut(s) 53, 110
BspACI CCGC 1 cut(s) 68
BspANI GGCC 1 cut(s) 45
BspEI TCCGGA 1 cut(s) 137
BspLI GGNNCC 2 cut(s) 45, 142
BspPI GGATC 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 63, 98
BssMI GATC 2 cut(s) 53, 110
Bst4CI ACNGT 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 48
BstEII GGTNACC 1 cut(s) 31
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 2 cut(s) 56, 113
BstMBI GATC 2 cut(s) 53, 110
BstPI GGTNACC 1 cut(s) 31
BstSLI GKGCMC 1 cut(s) 47
Bsu36I CCTNAGG 1 cut(s) 48
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 209
Cfr13I GGNCC 3 cut(s) 43, 44, 159
CviAII CATG 1 cut(s) 28
CviJI RGCY 6 cut(s) 45, 81, 143, 169, 207, 247
CviKI_1 RGCY 6 cut(s) 45, 81, 143, 169, 207, 247
DdeI CTNAG 1 cut(s) 48
DpnI GATC 2 cut(s) 55, 112
DpnII GATC 2 cut(s) 53, 110
EciI GGCGGA 1 cut(s) 83
Ecl136II GAGCTC 1 cut(s) 81
Eco24I GRGCYC 2 cut(s) 47, 83
Eco47I GGWCC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 81
Eco81I CCTNAGG 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 97
Eco91I GGTNACC 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 81
EcoO109I RGGNCCY 3 cut(s) 43, 44, 159
EcoO65I GGTNACC 1 cut(s) 31
EcoT38I GRGCYC 2 cut(s) 47, 83
FaeI CATG 1 cut(s) 31
FaiI YATR 2 cut(s) 29, 191
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 1 cut(s) 27
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 2 cut(s) 47, 83
HaeIII GGCC 1 cut(s) 45
HapII CCGG 1 cut(s) 138
Hin1II CATG 1 cut(s) 31
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HpaI GTTAAC 1 cut(s) 105
HpaII CCGG 1 cut(s) 138
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 3 cut(s) 58, 85, 166
Hpy188III TCNNGA 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 105
Hpy99I CGWCG 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 27
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 1 cut(s) 31
Kpn2I TCCGGA 1 cut(s) 137
KspAI GTTAAC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 53, 110
LmnI GCTCC 3 cut(s) 140, 204, 224
LpnPI CCDG 2 cut(s) 151, 236
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 55, 112
MboI GATC 2 cut(s) 53, 110
MboII GAAGA 1 cut(s) 247
MhlI GDGCHC 2 cut(s) 47, 83
MnlI CCTC 7 cut(s) 34, 58, 93, 150, 172, 195, 213
MroI TCCGGA 1 cut(s) 137
MseI TTAA 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 253
MspI CCGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 133
NdeII GATC 2 cut(s) 53, 110
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 2 cut(s) 45, 142
NmuCI GTSAC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PctI GAATGC 1 cut(s) 133
PpuMI RGGWCCY 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 83
Psp5II RGGWCCY 1 cut(s) 159
PspEI GGTNACC 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 45, 142
PspOMI GGGCCC 1 cut(s) 43
PspPI GGNCC 3 cut(s) 43, 44, 159
PspPPI RGGWCCY 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 253
SacI GAGCTC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 104
Sau3AI GATC 2 cut(s) 53, 110
Sau96I GGNCC 3 cut(s) 43, 44, 159
SduI GDGCHC 2 cut(s) 47, 83
SetI ASST 5 cut(s) 83, 104, 164, 171, 209
SinI GGWCC 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 253
SsiI CCGC 1 cut(s) 68
SstI GAGCTC 1 cut(s) 83
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 2 cut(s) 39, 92
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 198, 248
VpaK11BI GGWCC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.