Rorug01G0056200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000949
Physical Location & Seq
Forward (+)
9233522 .. 9234165
644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0056200.1

Sequence Viewer

Length: 462 bp
ATGTGGTTTTGGAGATGTGGGATGTTGTTGACAGGGCTCGTGGTCCTCTTCTTTGATGTGCCTGATTCCATTGCTACTCAAAGAGGTAGCAGTGTAGGTGTTGATAGGGTTTTGAACATTACAAAACAAGATGGAGTGTCTACCAAGAAAAGTTTTTTCATTATCGGCACCACCAACAGATCTGACCTTATAGAACTTGCACTTCTACCTACATCCAGCACATCTGGCCCCAATGAGGAATCATACTTGAATATTCAAGGCTTGCCTGTTTGCTTGAGGAAATCACCGATTCACCGGTTTCCAAATATGTGGACATCAGAGCGCTTGCCAATGCAGACATTGCACCTGGCGAGATGGTTTGGATCAGATCAGTTCAGGTTTCAGATTTTGGGCCCGCAGTTTGATCCGTTCCCCATACTACTACTGCTGATGGAGCTACTAAAGATGACTCTACAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.43

Weight (kDa)

8.74

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 140
AciI CCGC 1 cut(s) 395
AclWI GGATC 2 cut(s) 370, 398
AfeI AGCGCT 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 235
AgeI ACCGGT 1 cut(s) 294
AgsI TTSAA 3 cut(s) 115, 250, 257
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 1 cut(s) 436
AluI AGCT 1 cut(s) 436
AlwI GGATC 2 cut(s) 370, 398
Aor51HI AGCGCT 1 cut(s) 323
AoxI GGCC 2 cut(s) 226, 391
ApaI GGGCCC 1 cut(s) 395
AsiGI ACCGGT 1 cut(s) 294
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 4 cut(s) 43, 227, 391, 392
AsuHPI GGTGA 2 cut(s) 276, 284
AvaII GGWCC 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 395
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 2 cut(s) 39, 395
BauI CACGAG 1 cut(s) 38
BccI CCATC 3 cut(s) 125, 348, 424
BciT130I CCWGG 1 cut(s) 347
BfmI CTRYAG 1 cut(s) 452
BfoI RGCGCY 1 cut(s) 325
BglII AGATCT 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 4 cut(s) 43, 227, 391, 392
BmiI GGNNCC 3 cut(s) 169, 229, 393
BmrFI CCNGG 1 cut(s) 347
BpuEI CTTGAG 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse118I RCCGGY 1 cut(s) 294
Bse3DI GCAATG 2 cut(s) 69, 338
BseBI CCWGG 1 cut(s) 347
BseGI GGATG 2 cut(s) 27, 212
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 2 cut(s) 69, 338
BseSI GKGCMC 1 cut(s) 395
BshFI GGCC 2 cut(s) 228, 393
BshNI GGYRCC 1 cut(s) 167
BshTI ACCGGT 1 cut(s) 294
BsiSI CCGG 1 cut(s) 295
BslI CCNNNNNNNGG 1 cut(s) 235
BsnI GGCC 2 cut(s) 228, 393
Bsp120I GGGCCC 1 cut(s) 391
Bsp1286I GDGCHC 2 cut(s) 39, 395
Bsp143I GATC 4 cut(s) 179, 362, 367, 403
BspACI CCGC 1 cut(s) 395
BspANI GGCC 2 cut(s) 228, 393
BspLI GGNNCC 3 cut(s) 169, 229, 393
BspPI GGATC 2 cut(s) 370, 398
BspT107I GGYRCC 1 cut(s) 167
BsrDI GCAATG 2 cut(s) 69, 338
BsrFI RCCGGY 1 cut(s) 294
BssAI RCCGGY 1 cut(s) 294
BssMI GATC 4 cut(s) 179, 362, 367, 403
BssSI CACGAG 1 cut(s) 38
Bst2BI CACGAG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 456
Bst6I CTCTTC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 340
BstC8I GCNNGC 3 cut(s) 263, 326, 395
BstF5I GGATG 2 cut(s) 27, 212
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 4 cut(s) 182, 365, 370, 406
BstMBI GATC 4 cut(s) 179, 362, 367, 403
BstMWI GCNNNNNNNGC 3 cut(s) 225, 340, 433
BstNI CCWGG 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 452
BstSLI GKGCMC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 179
BstXI CCANNNNNNTGG 1 cut(s) 309
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 2 cut(s) 228, 393
BtsCI GGATG 2 cut(s) 27, 212
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 3 cut(s) 263, 326, 395
CfoI GCGC 1 cut(s) 324
Cfr10I RCCGGY 1 cut(s) 294
Cfr13I GGNCC 4 cut(s) 43, 227, 391, 392
CspAI ACCGGT 1 cut(s) 294
CviJI RGCY 5 cut(s) 37, 228, 261, 393, 436
CviKI_1 RGCY 5 cut(s) 37, 228, 261, 393, 436
DpnI GATC 4 cut(s) 181, 364, 369, 405
DpnII GATC 4 cut(s) 179, 362, 367, 403
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco24I GRGCYC 2 cut(s) 39, 395
Eco47I GGWCC 1 cut(s) 43
Eco47III AGCGCT 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 345
EcoT38I GRGCYC 2 cut(s) 39, 395
FaiI YATR 4 cut(s) 191, 244, 308, 416
FauI CCCGC 1 cut(s) 402
FblI GTMKAC 1 cut(s) 140
FokI GGATG 2 cut(s) 34, 199
FriOI GRGCYC 2 cut(s) 39, 395
GlaI GCGC 1 cut(s) 323
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 2 cut(s) 228, 393
HapII CCGG 1 cut(s) 295
HhaI GCGC 1 cut(s) 324
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 4 cut(s) 65, 239, 289, 448
HpaII CCGG 1 cut(s) 295
HphI GGTGA 2 cut(s) 276, 284
Hpy166II GTNNAC 3 cut(s) 30, 141, 312
Hpy188I TCNGA 4 cut(s) 184, 319, 367, 384
Hpy8I GTNNAC 3 cut(s) 30, 141, 312
HpyCH4III ACNGT 1 cut(s) 456
HpyCH4V TGCA 3 cut(s) 200, 334, 343
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 340, 433
HspAI GCGC 1 cut(s) 322
Kzo9I GATC 4 cut(s) 179, 362, 367, 403
LmnI GCTCC 1 cut(s) 433
LpnPI CCDG 9 cut(s) 18, 75, 210, 229, 279, 308, 332, 359, 361
MalI GATC 4 cut(s) 181, 364, 369, 405
MboI GATC 4 cut(s) 179, 362, 367, 403
MboII GAAGA 1 cut(s) 40
MflI RGATCY 1 cut(s) 179
MhlI GDGCHC 2 cut(s) 39, 395
MlyI GAGTC 1 cut(s) 442
MnlI CCTC 4 cut(s) 56, 77, 229, 270
MspI CCGG 1 cut(s) 295
MspR9I CCNGG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 347
MwoI GCNNNNNNNGC 3 cut(s) 225, 340, 433
NdeII GATC 4 cut(s) 179, 362, 367, 403
NlaIV GGNNCC 3 cut(s) 169, 229, 393
PfeI GAWTC 3 cut(s) 65, 239, 289
PinAI ACCGGT 1 cut(s) 294
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 3 cut(s) 169, 229, 393
PspOMI GGGCCC 1 cut(s) 391
PspPI GGNCC 4 cut(s) 43, 227, 391, 392
PsuI RGATCY 1 cut(s) 179
Sau3AI GATC 4 cut(s) 179, 362, 367, 403
Sau96I GGNCC 4 cut(s) 43, 227, 391, 392
SchI GAGTC 1 cut(s) 442
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 2 cut(s) 39, 395
SetI ASST 7 cut(s) 88, 100, 189, 211, 348, 380, 438
SfcI CTRYAG 1 cut(s) 452
SinI GGWCC 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SsiI CCGC 1 cut(s) 395
SspI AATATT 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 456
TfiI GAWTC 3 cut(s) 65, 239, 289
TscAI CASTG 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 148
TspGWI ACGGA 1 cut(s) 396
TspRI CASTG 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.