Rroxscaffold_1G00021100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000949
Physical Location & Seq
Forward (+)
25819824 .. 25823600
3777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021100.1

Sequence Viewer

Length: 318 bp
ATGTGTGCGCTCCTTCCTTTGCATGTTTTCCAATGTGGGATGCTAAAACCACTATTCCAATGTGGCAAGGCCGGGAAGGTGGCTTCTCGGCGAGGTATTGGCCGCTTCCGACTACCTTGGCGTAGCTTGAACATCGGGCTACGGGATGCATGTCGGGGTTGGGTCCCACCACGGCTTATAGGCCCCCCTATAAGGGTGTTGCTTATGCTTGGTGACATAGAAAAAAGTCTTGCTAGTAGAGGTATCTACACGTTATACCACATCCGTCCGGATTGTTTCAATCCATATGGAACCTTCATATATATCTCTCGAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.92

Weight (kDa)

10.44

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 268
AciI CCGC 1 cut(s) 103
AcoI YGGCCR 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 192, 193
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 130, 280
AluBI AGCT 1 cut(s) 126
AluI AGCT 1 cut(s) 126
Aor13HI TCCGGA 1 cut(s) 268
AoxI GGCC 3 cut(s) 69, 100, 181
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 2 cut(s) 163, 182
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 224
AvaII GGWCC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 188
BcnI CCSGG 1 cut(s) 73
BfaI CTAG 2 cut(s) 234, 316
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 163, 182
BmiI GGNNCC 4 cut(s) 164, 165, 184, 292
BmrFI CCNGG 1 cut(s) 73
BmsI GCATC 2 cut(s) 30, 136
BpuMI CCSGG 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 116, 170
BsaWI WCCGGW 1 cut(s) 268
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 193
BseAI TCCGGA 1 cut(s) 268
BseDI CCNNGG 2 cut(s) 116, 170
BseGI GGATG 3 cut(s) 45, 151, 261
BseLI CCNNNNNNNGG 2 cut(s) 192, 193
BshFI GGCC 3 cut(s) 71, 102, 183
BsiSI CCGG 2 cut(s) 72, 269
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 192, 193
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 3 cut(s) 71, 102, 183
Bsp13I TCCGGA 1 cut(s) 268
BspACI CCGC 1 cut(s) 103
BspANI GGCC 3 cut(s) 71, 102, 183
BspEI TCCGGA 1 cut(s) 268
BspLI GGNNCC 4 cut(s) 164, 165, 184, 292
BssECI CCNNGG 2 cut(s) 116, 170
BssT1I CCWWGG 1 cut(s) 116
BstDSI CCRYGG 1 cut(s) 170
BstF5I GGATG 3 cut(s) 45, 151, 261
BstHHI GCGC 1 cut(s) 10
BstNSI RCATGY 2 cut(s) 26, 153
BstSCI CCNGG 1 cut(s) 71
BsuRI GGCC 3 cut(s) 71, 102, 183
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 3 cut(s) 45, 151, 261
CfoI GCGC 1 cut(s) 10
Cfr13I GGNCC 2 cut(s) 163, 182
CviAII CATG 2 cut(s) 23, 150
CviJI RGCY 7 cut(s) 71, 83, 102, 126, 139, 175, 183
CviKI_1 RGCY 7 cut(s) 71, 83, 102, 126, 139, 175, 183
EaeI YGGCCR 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 163
EcoO109I RGGNCCY 2 cut(s) 163, 182
EcoT14I CCWWGG 1 cut(s) 116
EcoT22I ATGCAT 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 2 cut(s) 26, 153
FaqI GGGAC 1 cut(s) 149
FatI CATG 2 cut(s) 22, 149
FauNDI CATATG 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 103
FokI GGATG 3 cut(s) 52, 158, 248
Fsp4HI GCNGC 1 cut(s) 103
FspBI CTAG 2 cut(s) 234, 316
GlaI GCGC 1 cut(s) 9
GluI GCNGC 1 cut(s) 103
HaeIII GGCC 3 cut(s) 71, 102, 183
HapII CCGG 2 cut(s) 72, 269
HhaI GCGC 1 cut(s) 10
Hin1II CATG 2 cut(s) 26, 153
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HinfI GANTC 1 cut(s) 312
HpaII CCGG 2 cut(s) 72, 269
HphI GGTGA 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 2 cut(s) 269, 309
HpyAV CCTTC 3 cut(s) 23, 70, 304
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 22, 149
HpySE526I ACGT 1 cut(s) 251
Hsp92II CATG 2 cut(s) 26, 153
HspAI GCGC 1 cut(s) 8
KflI GGGWCCC 1 cut(s) 163
Kpn2I TCCGGA 1 cut(s) 268
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 2 cut(s) 85, 282
LweI GCATC 2 cut(s) 30, 136
MaeI CTAG 2 cut(s) 234, 316
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 2 cut(s) 86, 233
Mph1103I ATGCAT 1 cut(s) 151
MroI TCCGGA 1 cut(s) 268
MspI CCGG 2 cut(s) 72, 269
MspR9I CCNGG 1 cut(s) 73
NciI CCSGG 1 cut(s) 73
NdeI CATATG 1 cut(s) 286
NlaIII CATG 2 cut(s) 26, 153
NlaIV GGNNCC 4 cut(s) 164, 165, 184, 292
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 212
NsiI ATGCAT 1 cut(s) 151
NspI RCATGY 2 cut(s) 26, 153
PfeI GAWTC 1 cut(s) 312
PkrI GCNGC 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
PspN4I GGNNCC 4 cut(s) 164, 165, 184, 292
PspPI GGNCC 2 cut(s) 163, 182
PspPPI RGGWCCY 1 cut(s) 163
SatI GCNGC 1 cut(s) 103
Sau96I GGNCC 2 cut(s) 163, 182
ScrFI CCNGG 1 cut(s) 73
SetI ASST 7 cut(s) 81, 97, 118, 128, 244, 254, 296
SfaNI GCATC 2 cut(s) 30, 136
SinI GGWCC 1 cut(s) 163
SsiI CCGC 1 cut(s) 103
SspMI CTAG 2 cut(s) 234, 316
StyD4I CCNGG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 116
TaiI ACGT 1 cut(s) 254
TaqI TCGA 1 cut(s) 310
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 1 cut(s) 312
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 286
TspGWI ACGGA 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 163
XceI RCATGY 2 cut(s) 26, 153
XspI CTAG 2 cut(s) 234, 316
Zsp2I ATGCAT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.