Rmu_sc0014556.1_g000001

Bromodomain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014556.1
OG0000949
Physical Location & Seq
Forward (+)
1 .. 4336
4336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014556.1_g000001.1.cds

Sequence Viewer

Length: 563 bp
gcgactcgtgctcgccgagctatgtagcgctagcttatgactcaagcgggggcgttaaaatggtggaacaacgggtcggccaaccctgcagggttgaatttgtgcgatctgctcacccgcccgttccaagttgtgggttgggccttgtggttcaggcgaaggcctgggctgcgtggcccttagagaggagggcaaagcgtgaggctggtttcacagagcagcgaaaaccgcccgcccacaacagtggaaggatagcggttcactttgatcttgaggagctgcttcactatttttctaaatcggagaagaaggactttgaggccatccaacaaatgaatcaagctgttctgaaggtggatttctgcaacagctttcctgtccaattgtaccctgaactaatcaaagcaaggttaaagaatgactattataggagcttggaagcagtgaagcatgacataacccagatgctagaaaacgtccggcattacttcaagagaaataacttgcaagccaggattaagcacctttcaaaatggtttaagaaaaaaatttctaggatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp Bromodomain WD40

Protein Analysis

186

Amino Acids

21.53

Weight (kDa)

9.67

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 133
AciI CCGC 5 cut(s) 47, 118, 229, 233, 256
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 2 cut(s) 97, 548
AcuI CTGAAG 1 cut(s) 370
AfaI GTAC 1 cut(s) 388
AfeI AGCGCT 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 133, 185
AgsI TTSAA 3 cut(s) 97, 492, 530
AjnI CCWGG 2 cut(s) 163, 511
AleI CACNNNNGTG 1 cut(s) 242
AluBI AGCT 6 cut(s) 20, 34, 279, 343, 371, 434
AluI AGCT 6 cut(s) 20, 34, 279, 343, 371, 434
Alw21I GWGCWC 1 cut(s) 13
Aor51HI AGCGCT 1 cut(s) 29
AoxI GGCC 5 cut(s) 78, 141, 161, 175, 320
ApeKI GCWGC 3 cut(s) 169, 219, 279
ApoI RAATTY 2 cut(s) 97, 548
AspLEI GCGC 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 141, 176
AsuHPI GGTGA 1 cut(s) 106
AsuNHI GCTAGC 1 cut(s) 30
BauI CACGAG 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 3 cut(s) 156, 231, 266
BccI CCATC 1 cut(s) 331
BciT130I CCWGG 2 cut(s) 165, 513
BfaI CTAG 3 cut(s) 31, 469, 554
BfmI CTRYAG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 31
BisI GCNGC 3 cut(s) 170, 220, 280
BlsI GCNGC 3 cut(s) 171, 221, 281
Bme1390I CCNGG 2 cut(s) 165, 513
BmgT120I GGNCC 2 cut(s) 141, 176
BmrFI CCNGG 2 cut(s) 165, 513
BmsI GCATC 1 cut(s) 455
BmtI GCTAGC 1 cut(s) 34
BpuEI CTTGAG 2 cut(s) 27, 292
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 185
BseBI CCWGG 2 cut(s) 165, 513
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 2 cut(s) 323, 563
BseLI CCNNNNNNNGG 2 cut(s) 133, 185
BseRI GAGGAG 2 cut(s) 201, 289
BseXI GCAGC 3 cut(s) 156, 231, 266
BshFI GGCC 5 cut(s) 80, 143, 163, 177, 322
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 480
BslI CCNNNNNNNGG 2 cut(s) 133, 185
BsnI GGCC 5 cut(s) 80, 143, 163, 177, 322
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 2 cut(s) 106, 267
BspACI CCGC 5 cut(s) 47, 118, 229, 233, 256
BspANI GGCC 5 cut(s) 80, 143, 163, 177, 322
BspMAI CTGCAG 1 cut(s) 91
BspOI GCTAGC 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 2 cut(s) 106, 267
BssSI CACGAG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 165, 513
Bst4CI ACNGT 1 cut(s) 244
BstC8I GCNNGC 4 cut(s) 13, 32, 233, 509
BstDEI CTNAG 1 cut(s) 180
BstENI CCTNNNNNAGG 1 cut(s) 183
BstF5I GGATG 2 cut(s) 323, 563
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 2 cut(s) 109, 270
BstMBI GATC 2 cut(s) 106, 267
BstMWI GCNNNNNNNGC 5 cut(s) 8, 17, 86, 169, 228
BstNI CCWGG 2 cut(s) 165, 513
BstSCI CCNGG 2 cut(s) 163, 511
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 3 cut(s) 156, 231, 266
BstXI CCANNNNNNTGG 1 cut(s) 244
BsuRI GGCC 5 cut(s) 80, 143, 163, 177, 322
BtsCI GGATG 2 cut(s) 323, 563
BtsI GCAGTG 1 cut(s) 449
BtsIMutI CAGTG 2 cut(s) 249, 449
Cac8I GCNNGC 4 cut(s) 13, 32, 233, 509
CfoI GCGC 1 cut(s) 30
Cfr13I GGNCC 2 cut(s) 141, 176
Csp6I GTAC 1 cut(s) 387
CviAII CATG 1 cut(s) 451
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 1 cut(s) 180
DpnI GATC 2 cut(s) 108, 269
DpnII GATC 2 cut(s) 106, 267
EaeI YGGCCR 1 cut(s) 78
Eco147I AGGCCT 1 cut(s) 163
Eco47III AGCGCT 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 370
EcoNI CCTNNNNNAGG 1 cut(s) 183
EcoRII CCWGG 2 cut(s) 163, 511
FaeI CATG 1 cut(s) 454
FaiI YATR 5 cut(s) 23, 38, 428, 452, 457
FalI AAGNNNNNCTT 2 cut(s) 298, 330
FatI CATG 1 cut(s) 450
FauI CCCGC 3 cut(s) 40, 125, 240
Fnu4HI GCNGC 3 cut(s) 170, 220, 280
FokI GGATG 1 cut(s) 310
Fsp4HI GCNGC 3 cut(s) 170, 220, 280
FspBI CTAG 3 cut(s) 31, 469, 554
GlaI GCGC 1 cut(s) 29
GluI GCNGC 3 cut(s) 170, 220, 280
HaeII RGCGCY 1 cut(s) 31
HaeIII GGCC 5 cut(s) 80, 143, 163, 177, 322
HapII CCGG 1 cut(s) 480
HhaI GCGC 1 cut(s) 30
Hin1II CATG 1 cut(s) 454
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HinfI GANTC 3 cut(s) 4, 40, 336
HpaII CCGG 1 cut(s) 480
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 2 cut(s) 303, 350
Hpy188III TCNNGA 2 cut(s) 271, 492
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 4 cut(s) 153, 242, 303, 345
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 476
HpyCH4V TGCA 3 cut(s) 89, 365, 507
HpyF10VI GCNNNNNNNGC 5 cut(s) 8, 17, 86, 169, 228
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 476
Hsp92II CATG 1 cut(s) 454
HspAI GCGC 1 cut(s) 28
Kzo9I GATC 2 cut(s) 106, 267
LmnI GCTCC 2 cut(s) 276, 431
Lsp1109I GCAGC 3 cut(s) 156, 231, 266
LweI GCATC 1 cut(s) 455
MaeI CTAG 3 cut(s) 31, 469, 554
MaeII ACGT 1 cut(s) 476
MalI GATC 2 cut(s) 108, 269
MboI GATC 2 cut(s) 106, 267
MboII GAAGA 1 cut(s) 318
MfeI CAATTG 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 3 cut(s) 97, 382, 548
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 5 cut(s) 179, 182, 195, 267, 312
MseI TTAA 4 cut(s) 56, 412, 518, 539
MslI CAYNNNNRTG 1 cut(s) 242
MspI CCGG 1 cut(s) 480
MspR9I CCNGG 2 cut(s) 165, 513
MunI CAATTG 1 cut(s) 382
MvaI CCWGG 2 cut(s) 165, 513
MwoI GCNNNNNNNGC 5 cut(s) 8, 17, 86, 169, 228
NdeII GATC 2 cut(s) 106, 267
NheI GCTAGC 1 cut(s) 30
NlaIII CATG 1 cut(s) 454
NmeAIII GCCGAG 1 cut(s) 41
OliI CACNNNNGTG 1 cut(s) 242
PceI AGGCCT 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PfeI GAWTC 1 cut(s) 336
PflMI CCANNNNNTGG 1 cut(s) 133
PkrI GCNGC 3 cut(s) 171, 221, 281
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Psp6I CCWGG 2 cut(s) 163, 511
PspGI CCWGG 2 cut(s) 163, 511
PspPI GGNCC 2 cut(s) 141, 176
PstI CTGCAG 1 cut(s) 91
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 4 cut(s) 56, 412, 518, 539
SatI GCNGC 3 cut(s) 170, 220, 280
Sau3AI GATC 2 cut(s) 106, 267
Sau96I GGNCC 2 cut(s) 141, 176
SbfI CCTGCAGG 1 cut(s) 91
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 2 cut(s) 165, 513
SdaI CCTGCAGG 1 cut(s) 91
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 1 cut(s) 455
SfcI CTRYAG 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 42, 271
SmoI CTYRAG 2 cut(s) 42, 271
Sse8387I CCTGCAGG 1 cut(s) 91
Sse9I AATT 3 cut(s) 97, 382, 548
SseBI AGGCCT 1 cut(s) 163
SsiI CCGC 5 cut(s) 47, 118, 229, 233, 256
SspMI CTAG 3 cut(s) 31, 469, 554
StuI AGGCCT 1 cut(s) 163
StyD4I CCNGG 2 cut(s) 163, 511
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 479
TasI AATT 3 cut(s) 97, 382, 548
TfiI GAWTC 1 cut(s) 336
Tru1I TTAA 4 cut(s) 56, 412, 518, 539
Tru9I TTAA 4 cut(s) 56, 412, 518, 539
TscAI CASTG 2 cut(s) 249, 449
TseI GCWGC 3 cut(s) 169, 219, 279
TspDTI ATGAA 1 cut(s) 349
TspRI CASTG 2 cut(s) 249, 449
Van91I CCANNNNNTGG 1 cut(s) 133
XagI CCTNNNNNAGG 1 cut(s) 183
XapI RAATTY 2 cut(s) 97, 548
XspI CTAG 3 cut(s) 31, 469, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.