Rmu_sc0011709.1_g000004

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011709.1
OG0000949
Physical Location & Seq
Forward (+)
21340 .. 23372
2033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011709.1_g000004.1.cds

Sequence Viewer

Length: 726 bp
atgttgtgcatgcaagttggcaaggccggaaaggtggcttcccagctagatattggtcgcctccaactaccatggcatagcttggacatcgggctacaggatgcatgtagcggttgggtcccaccatggcttgtgggtcccccaaagagggaatttagtggccacaatgtggtggactatcaagcggctttagcaagaatgtcacaagtagggactgttgatcaattcaccaaactctcaaggagagctccaggcttctcacaacaagtattactgtcttgttttttaggagggttaaaggataatatccgagctgatgtgaaggccctgaagcaaagaaccttatatgatgcatgtgagttggccaaggtttatgaagaaagagagatgaaccacagaagccatcccaatggatcattcgttaatagaaattccccaactggccctcctcgaactagccacacaatcacgtgtggtggtagacagtttcataataacccacaagctattccagccaggccacctgttgctcatgtggtagcaaatcaagtaggagggaacagaaggttaactcaggcggagtaccaagagaggagagcccgaaatcaatgttttttctatgacgatatattccgacttggccacaactgtaggagaggccaagccatggtgattatggagcttatgcaagaagagttagcgatgcaggctacaaacaacctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

241

Amino Acids

27.04

Weight (kDa)

9.44

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 169, 667
AccI GTMKAC 1 cut(s) 481
AciI CCGC 3 cut(s) 111, 185, 578
AclWI GGATC 1 cut(s) 421
AcoI YGGCCR 3 cut(s) 160, 363, 640
AcsI RAATTY 2 cut(s) 152, 430
AcuI CTGAAG 1 cut(s) 350
AcvI CACGTG 1 cut(s) 471
AdeI CACNNNGTG 1 cut(s) 169
AfaI GTAC 1 cut(s) 584
AfiI CCNNNNNNNGG 4 cut(s) 147, 148, 169, 667
AflIII ACRYGT 1 cut(s) 470
AjnI CCWGG 2 cut(s) 250, 515
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 6 cut(s) 46, 81, 248, 314, 506, 682
AluI AGCT 6 cut(s) 46, 81, 248, 314, 506, 682
Alw21I GWGCWC 1 cut(s) 250
AlwI GGATC 1 cut(s) 421
AoxI GGCC 8 cut(s) 24, 160, 324, 363, 442, 518, 640, 658
ApoI RAATTY 2 cut(s) 152, 430
AspS9I GGNCC 4 cut(s) 118, 137, 325, 443
AsuHPI GGTGA 2 cut(s) 220, 682
AvaII GGWCC 2 cut(s) 118, 137
BalI TGGCCA 3 cut(s) 162, 365, 642
BanII GRGCYC 2 cut(s) 250, 601
BbrPI CACGTG 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 250
BccI CCATC 1 cut(s) 411
BciT130I CCWGG 2 cut(s) 252, 517
BclI TGATCA 1 cut(s) 220
BfaI CTAG 2 cut(s) 47, 456
BfmI CTRYAG 2 cut(s) 95, 649
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 2 cut(s) 252, 517
Bme18I GGWCC 2 cut(s) 118, 137
BmgT120I GGNCC 4 cut(s) 118, 137, 325, 443
BmiI GGNNCC 4 cut(s) 119, 120, 138, 139
BmrFI CCNGG 2 cut(s) 252, 517
BmsI GCATC 3 cut(s) 91, 340, 693
BpmI CTGGAG 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 223
BsaAI YACGTR 1 cut(s) 471
BsaJI CCNNGG 4 cut(s) 71, 125, 366, 666
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 4 cut(s) 147, 148, 169, 667
Bse1I ACTGG 1 cut(s) 445
BseBI CCWGG 2 cut(s) 252, 517
BseDI CCNNGG 4 cut(s) 71, 125, 366, 666
BseGI GGATG 2 cut(s) 106, 403
BseLI CCNNNNNNNGG 4 cut(s) 147, 148, 169, 667
BseMII CTCAG 1 cut(s) 587
BseNI ACTGG 1 cut(s) 445
BseRI GAGGAG 2 cut(s) 438, 607
BseYI CCCAGC 1 cut(s) 42
BshFI GGCC 8 cut(s) 26, 162, 326, 365, 444, 520, 642, 660
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 3 cut(s) 104, 123, 226
BslI CCNNNNNNNGG 4 cut(s) 147, 148, 169, 667
BsmFI GGGAC 3 cut(s) 104, 123, 226
BsnI GGCC 8 cut(s) 26, 162, 326, 365, 444, 520, 642, 660
Bsp1286I GDGCHC 2 cut(s) 250, 601
Bsp143I GATC 2 cut(s) 220, 413
Bsp19I CCATGG 3 cut(s) 71, 125, 666
BspACI CCGC 3 cut(s) 111, 185, 578
BspANI GGCC 8 cut(s) 26, 162, 326, 365, 444, 520, 642, 660
BspCNI CTCAG 1 cut(s) 586
BspLI GGNNCC 4 cut(s) 119, 120, 138, 139
BspPI GGATC 1 cut(s) 421
BsrI ACTGG 1 cut(s) 445
BssECI CCNNGG 4 cut(s) 71, 125, 366, 666
BssMI GATC 2 cut(s) 220, 413
BssT1I CCWWGG 4 cut(s) 71, 125, 366, 666
Bst2UI CCWGG 2 cut(s) 252, 517
Bst4CI ACNGT 4 cut(s) 217, 276, 486, 650
Bst6I CTCTTC 1 cut(s) 687
BstBAI YACGTR 1 cut(s) 471
BstC8I GCNNGC 2 cut(s) 11, 708
BstDEI CTNAG 1 cut(s) 573
BstDSI CCRYGG 3 cut(s) 71, 125, 666
BstF5I GGATG 2 cut(s) 106, 403
BstKTI GATC 2 cut(s) 223, 416
BstMBI GATC 2 cut(s) 220, 413
BstMWI GCNNNNNNNGC 3 cut(s) 191, 512, 707
BstNI CCWGG 2 cut(s) 252, 517
BstNSI RCATGY 3 cut(s) 13, 108, 357
BstSCI CCNGG 2 cut(s) 250, 515
BstSFI CTRYAG 2 cut(s) 95, 649
BstXI CCANNNNNNTGG 1 cut(s) 410
BsuRI GGCC 8 cut(s) 26, 162, 326, 365, 444, 520, 642, 660
BtgI CCRYGG 3 cut(s) 71, 125, 666
BtgZI GCGATG 1 cut(s) 716
BtsCI GGATG 2 cut(s) 106, 403
Cac8I GCNNGC 2 cut(s) 11, 708
Cfr13I GGNCC 4 cut(s) 118, 137, 325, 443
Csp6I GTAC 1 cut(s) 583
CviAII CATG 7 cut(s) 10, 72, 105, 126, 354, 533, 667
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 1 cut(s) 573
DpnI GATC 2 cut(s) 222, 415
DpnII GATC 2 cut(s) 220, 413
DraIII CACNNNGTG 1 cut(s) 169
EaeI YGGCCR 3 cut(s) 160, 363, 640
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
EciI GGCGGA 1 cut(s) 593
Ecl136II GAGCTC 1 cut(s) 248
Eco130I CCWWGG 4 cut(s) 71, 125, 366, 666
Eco24I GRGCYC 2 cut(s) 250, 601
Eco47I GGWCC 2 cut(s) 118, 137
Eco53kI GAGCTC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 350
Eco72I CACGTG 1 cut(s) 471
EcoICRI GAGCTC 1 cut(s) 248
EcoO109I RGGNCCY 3 cut(s) 118, 137, 325
EcoRII CCWGG 2 cut(s) 250, 515
EcoT14I CCWWGG 4 cut(s) 71, 125, 366, 666
EcoT22I ATGCAT 2 cut(s) 106, 355
EcoT38I GRGCYC 2 cut(s) 250, 601
ErhI CCWWGG 4 cut(s) 71, 125, 366, 666
FaeI CATG 7 cut(s) 13, 75, 108, 129, 357, 536, 670
FaqI GGGAC 3 cut(s) 104, 123, 226
FatI CATG 7 cut(s) 9, 71, 104, 125, 353, 532, 666
FbaI TGATCA 1 cut(s) 220
FblI GTMKAC 1 cut(s) 481
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 2 cut(s) 113, 390
FriOI GRGCYC 2 cut(s) 250, 601
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 2 cut(s) 47, 456
GluI GCNGC 1 cut(s) 186
GsaI CCCAGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 8 cut(s) 26, 162, 326, 365, 444, 520, 642, 660
HapII CCGG 1 cut(s) 27
Hin1II CATG 7 cut(s) 13, 75, 108, 129, 357, 536, 670
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HpaI GTTAAC 1 cut(s) 570
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 220, 682
Hpy166II GTNNAC 3 cut(s) 175, 482, 570
Hpy188I TCNGA 2 cut(s) 311, 635
Hpy8I GTNNAC 3 cut(s) 175, 482, 570
HpyAV CCTTC 2 cut(s) 316, 558
HpyCH4III ACNGT 4 cut(s) 217, 276, 486, 650
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 6 cut(s) 9, 13, 104, 353, 688, 706
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 512, 707
HpyF3I CTNAG 1 cut(s) 573
HpySE526I ACGT 1 cut(s) 470
Hsp92II CATG 7 cut(s) 13, 75, 108, 129, 357, 536, 670
KflI GGGWCCC 2 cut(s) 118, 137
Ksp22I TGATCA 1 cut(s) 220
KspAI GTTAAC 1 cut(s) 570
Kzo9I GATC 2 cut(s) 220, 413
LmnI GCTCC 2 cut(s) 253, 679
LweI GCATC 3 cut(s) 91, 340, 693
MaeI CTAG 2 cut(s) 47, 456
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 1 cut(s) 201
MalI GATC 2 cut(s) 222, 415
MboI GATC 2 cut(s) 220, 413
MboII GAAGA 2 cut(s) 389, 704
MhlI GDGCHC 2 cut(s) 250, 601
MlsI TGGCCA 3 cut(s) 162, 365, 642
MluCI AATT 3 cut(s) 152, 224, 430
MluNI TGGCCA 3 cut(s) 162, 365, 642
MmeI TCCRAC 2 cut(s) 88, 658
MnlI CCTC 8 cut(s) 71, 141, 284, 456, 459, 548, 585, 650
Mox20I TGGCCA 3 cut(s) 162, 365, 642
Mph1103I ATGCAT 2 cut(s) 106, 355
MscI TGGCCA 3 cut(s) 162, 365, 642
MseI TTAA 4 cut(s) 296, 423, 569, 724
MslI CAYNNNNRTG 1 cut(s) 408
Msp20I TGGCCA 3 cut(s) 162, 365, 642
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 2 cut(s) 252, 517
MvaI CCWGG 2 cut(s) 252, 517
MwoI GCNNNNNNNGC 3 cut(s) 191, 512, 707
NcoI CCATGG 3 cut(s) 71, 125, 666
NdeII GATC 2 cut(s) 220, 413
NlaIII CATG 7 cut(s) 13, 75, 108, 129, 357, 536, 670
NlaIV GGNNCC 4 cut(s) 119, 120, 138, 139
NmuCI GTSAC 1 cut(s) 201
NsiI ATGCAT 2 cut(s) 106, 355
NspI RCATGY 3 cut(s) 13, 108, 357
PaeI GCATGC 1 cut(s) 13
PflMI CCANNNNNTGG 2 cut(s) 169, 667
PkrI GCNGC 1 cut(s) 187
PmaCI CACGTG 1 cut(s) 471
PmlI CACGTG 1 cut(s) 471
Ppu21I YACGTR 1 cut(s) 471
PpuMI RGGWCCY 2 cut(s) 118, 137
Psp124BI GAGCTC 1 cut(s) 250
Psp5II RGGWCCY 2 cut(s) 118, 137
Psp6I CCWGG 2 cut(s) 250, 515
PspCI CACGTG 1 cut(s) 471
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 2 cut(s) 250, 515
PspN4I GGNNCC 4 cut(s) 119, 120, 138, 139
PspPI GGNCC 4 cut(s) 118, 137, 325, 443
PspPPI RGGWCCY 2 cut(s) 118, 137
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
RseI CAYNNNNRTG 1 cut(s) 408
SacI GAGCTC 1 cut(s) 250
SaqAI TTAA 4 cut(s) 296, 423, 569, 724
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 220, 413
Sau96I GGNCC 4 cut(s) 118, 137, 325, 443
ScrFI CCNGG 2 cut(s) 252, 517
SduI GDGCHC 2 cut(s) 250, 601
SfaNI GCATC 3 cut(s) 91, 340, 693
SfcI CTRYAG 2 cut(s) 95, 649
SinI GGWCC 2 cut(s) 118, 137
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SphI GCATGC 1 cut(s) 13
Sse9I AATT 3 cut(s) 152, 224, 430
SsiI CCGC 3 cut(s) 111, 185, 578
SspMI CTAG 2 cut(s) 47, 456
SstI GAGCTC 1 cut(s) 250
StyD4I CCNGG 2 cut(s) 250, 515
StyI CCWWGG 4 cut(s) 71, 125, 366, 666
TaaI ACNGT 4 cut(s) 217, 276, 486, 650
TaiI ACGT 1 cut(s) 473
TaqI TCGA 1 cut(s) 451
TasI AATT 3 cut(s) 152, 224, 430
TauI GCSGC 1 cut(s) 188
Tru1I TTAA 4 cut(s) 296, 423, 569, 724
Tru9I TTAA 4 cut(s) 296, 423, 569, 724
TseFI GTSAC 1 cut(s) 201
Tsp45I GTSAC 1 cut(s) 201
TspDTI ATGAA 3 cut(s) 390, 404, 479
Van91I CCANNNNNTGG 2 cut(s) 169, 667
VpaK11BI GGWCC 2 cut(s) 118, 137
XapI RAATTY 2 cut(s) 152, 430
XceI RCATGY 3 cut(s) 13, 108, 357
XcmI CCANNNNNNNNNTGG 2 cut(s) 50, 673
XmiI GTMKAC 1 cut(s) 481
XspI CTAG 2 cut(s) 47, 456
Zsp2I ATGCAT 2 cut(s) 106, 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.