Rmu_sc0009481.1_g000011

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009481.1
OG0000949
Physical Location & Seq
Forward (+)
42716 .. 44693
1978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009481.1_g000011.1.cds

Sequence Viewer

Length: 1248 bp
atgttatgggggcatcttggcaagggcggaaaggtggcttcccgacgtcggatttgcgacttccggataccgtggcgtagcttgaacatagggctacacgatgcatgtctcggttgggccttgccatgtcttgtggatgtcccaaagtcaaaacatcgacccaaagcaatagctgaaggggtaatcaaggccctcgatgcaccatcaaggcgtgcagggagaccaaagggggctagaaacaaagagtatccggttttcaaagatgactcttactcagggccagtcactcgcaacaaggctcacaaaatgacgcctagagatgcttcttcagtgggcactgcatcagaagatgagggacaaacgtggaaagataatccactctatgagacatctgtaaaagaaagagtctcccagctgcaaactgacggctcctcacagggttcagaaagcagtgaaagccagaacccgatggcgcacaagtgctggcaagaggaagaggccaagaggcttgctgaaatagaagcagcagcagccaaaaaattggaagagaaagaggctgaagtagctgcattggtagcacaactagccttaatggccaataacaaggaaaggggcaaagagatgttccaatacacagaacggaagcatgaggaacgtggagattcttcaggcggctcaaacacattctcccccgctgacatcaagacaatgatagccgaggggattaaggaatttcagttatcactgaatccgcctgtaattgggtacaggaagccataccctctccattatgacgccatacctttccccaaagggtatcagaggcccactttcgataagtttgatgggataaatggctctcctcaagaacatttggcccacttccactcagcttgcggagagacttctcaactggatgcctttttgatgaggttgcccagctgtgattgcagttgggcggtgccgttggtttcagctggcggtgcagctagcgttgacgctatgaggatgagattattccgtcaagcagagatgttttgttgggtggttgtttggactgatatgcggtgcctagaggaggatatatggctagcgaagcggaggattaggtgcccggcggtgacctggagctcagcggagattgatagttcggcggagcctcaagagttcggcggagactcgtggaggatgttcagcggtgaaatccagcagtggagaccagcgggacatggccggttttaccgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

415

Amino Acids

46.51

Weight (kDa)

8.24

Isoelectric Point (pI)

56.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 49
AccB1I GGYRCC 3 cut(s) 961, 1068, 1110
AccIII TCCGGA 1 cut(s) 63
AcoI YGGCCR 2 cut(s) 594, 1231
AcsI RAATTY 1 cut(s) 731
AcuI CTGAAG 4 cut(s) 195, 312, 579, 651
AcyI GRCGYC 3 cut(s) 46, 311, 795
AfaI GTAC 1 cut(s) 767
AfiI CCNNNNNNNGG 3 cut(s) 48, 761, 1078
AgsI TTSAA 2 cut(s) 85, 259
AjnI CCWGG 1 cut(s) 1124
AluBI AGCT 9 cut(s) 81, 173, 415, 566, 893, 942, 977, 989, 1131
AluI AGCT 9 cut(s) 81, 173, 415, 566, 893, 942, 977, 989, 1131
Alw21I GWGCWC 1 cut(s) 1133
Alw26I GTCTC 7 cut(s) 113, 214, 380, 412, 896, 1170, 1210
Aor13HI TCCGGA 1 cut(s) 63
AoxI GGCC 8 cut(s) 117, 189, 278, 498, 594, 824, 876, 1231
ApeKI GCWGC 6 cut(s) 415, 524, 527, 530, 566, 986
ApoI RAATTY 1 cut(s) 731
ArsI GACNNNNNNTTYG 2 cut(s) 36, 68
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 5 cut(s) 117, 190, 278, 825, 877
AsuC2I CCSGG 1 cut(s) 1115
AsuHPI GGTGA 2 cut(s) 1132, 1211
AsuNHI GCTAGC 2 cut(s) 989, 1090
BaeGI GKGCMC 2 cut(s) 338, 1115
BalI TGGCCA 1 cut(s) 596
BanI GGYRCC 3 cut(s) 961, 1068, 1110
BanII GRGCYC 1 cut(s) 1133
BauI CACGAG 1 cut(s) 1180
Bbv12I GWGCWC 1 cut(s) 1133
BbvI GCAGC 6 cut(s) 402, 536, 539, 542, 553, 998
BccI CCATC 3 cut(s) 211, 463, 839
BceAI ACGGC 2 cut(s) 442, 949
BciT130I CCWGG 1 cut(s) 1126
BciVI GTATCC 2 cut(s) 60, 258
BcnI CCSGG 1 cut(s) 1115
BcoDI GTCTC 7 cut(s) 113, 214, 380, 412, 896, 1170, 1210
BfaI CTAG 6 cut(s) 234, 315, 584, 990, 1073, 1091
BfuI GTATCC 2 cut(s) 60, 258
BglI GCCNNNNNGGC 1 cut(s) 593
BisI GCNGC 7 cut(s) 416, 525, 528, 531, 567, 673, 987
BlpI GCTNAGC 1 cut(s) 1132
BlsI GCNGC 7 cut(s) 417, 526, 529, 532, 568, 674, 988
Bme1390I CCNGG 2 cut(s) 1115, 1126
BmgT120I GGNCC 5 cut(s) 117, 190, 278, 825, 877
BmiI GGNNCC 5 cut(s) 430, 963, 1070, 1112, 1158
BmrFI CCNGG 2 cut(s) 1115, 1126
BmsI GCATC 6 cut(s) 22, 91, 187, 310, 350, 907
BmtI GCTAGC 2 cut(s) 993, 1094
BpmI CTGGAG 1 cut(s) 1147
Bpu1102I GCTNAGC 1 cut(s) 1132
BpuEI CTTGAG 2 cut(s) 849, 1146
BpuMI CCSGG 1 cut(s) 1115
BsaHI GRCGYC 3 cut(s) 46, 311, 795
BsaI GGTCTC 2 cut(s) 214, 1210
BsaJI CCNNGG 2 cut(s) 71, 717
BsaWI WCCGGW 2 cut(s) 63, 250
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 761, 1078
Bse118I RCCGGY 1 cut(s) 1233
Bse1I ACTGG 2 cut(s) 281, 918
BseAI TCCGGA 1 cut(s) 63
BseBI CCWGG 1 cut(s) 1126
BseDI CCNNGG 2 cut(s) 71, 717
BseGI GGATG 4 cut(s) 142, 922, 1014, 1194
BseLI CCNNNNNNNGG 3 cut(s) 48, 761, 1078
BseMII CTCAG 3 cut(s) 288, 903, 1146
BseNI ACTGG 2 cut(s) 281, 918
BseRI GAGGAG 3 cut(s) 421, 852, 1091
BseSI GKGCMC 2 cut(s) 338, 1115
BseXI GCAGC 6 cut(s) 402, 536, 539, 542, 553, 998
BseYI CCCAGC 2 cut(s) 411, 938
BsgI GTGCAG 2 cut(s) 234, 1005
BshFI GGCC 8 cut(s) 119, 191, 280, 500, 596, 826, 878, 1233
BshNI GGYRCC 3 cut(s) 961, 1068, 1110
BsiHKAI GWGCWC 1 cut(s) 1133
BsiSI CCGG 4 cut(s) 64, 251, 1115, 1234
BslFI GGGAC 3 cut(s) 125, 369, 1239
BslI CCNNNNNNNGG 3 cut(s) 48, 761, 1078
BsmAI GTCTC 7 cut(s) 113, 214, 380, 412, 896, 1170, 1210
BsmFI GGGAC 3 cut(s) 125, 369, 1239
BsnI GGCC 8 cut(s) 119, 191, 280, 500, 596, 826, 878, 1233
Bso31I GGTCTC 2 cut(s) 214, 1210
Bsp1286I GDGCHC 3 cut(s) 338, 1115, 1133
Bsp13I TCCGGA 1 cut(s) 63
Bsp1720I GCTNAGC 1 cut(s) 1132
BspANI GGCC 8 cut(s) 119, 191, 280, 500, 596, 826, 878, 1233
BspCNI CTCAG 3 cut(s) 287, 902, 1145
BspEI TCCGGA 1 cut(s) 63
BspLI GGNNCC 5 cut(s) 430, 963, 1070, 1112, 1158
BspOI GCTAGC 2 cut(s) 993, 1094
BspT107I GGYRCC 3 cut(s) 961, 1068, 1110
BspTNI GGTCTC 2 cut(s) 214, 1210
BsrFI RCCGGY 1 cut(s) 1233
BsrI ACTGG 2 cut(s) 281, 918
BssAI RCCGGY 1 cut(s) 1233
BssECI CCNNGG 2 cut(s) 71, 717
BssNI GRCGYC 3 cut(s) 46, 311, 795
BssSI CACGAG 1 cut(s) 1180
Bst2BI CACGAG 1 cut(s) 1180
Bst2UI CCWGG 1 cut(s) 1126
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 2 cut(s) 489, 540
BstACI GRCGYC 3 cut(s) 46, 311, 795
BstC8I GCNNGC 7 cut(s) 213, 485, 510, 895, 979, 991, 1092
BstDEI CTNAG 3 cut(s) 274, 889, 1132
BstDSI CCRYGG 1 cut(s) 71
BstEII GGTNACC 1 cut(s) 1120
BstENI CCTNNNNNAGG 1 cut(s) 1076
BstF5I GGATG 4 cut(s) 142, 922, 1014, 1194
BstHHI GCGC 1 cut(s) 475
BstMAI GTCTC 7 cut(s) 113, 214, 380, 412, 896, 1170, 1210
BstNI CCWGG 1 cut(s) 1126
BstNSI RCATGY 1 cut(s) 108
BstPI GGTNACC 1 cut(s) 1120
BstSCI CCNGG 2 cut(s) 1113, 1124
BstSLI GKGCMC 2 cut(s) 338, 1115
BstV1I GCAGC 6 cut(s) 402, 536, 539, 542, 553, 998
BstXI CCANNNNNNTGG 1 cut(s) 541
BsuI GTATCC 2 cut(s) 60, 258
BsuRI GGCC 8 cut(s) 119, 191, 280, 500, 596, 826, 878, 1233
BtgI CCRYGG 1 cut(s) 71
BtsCI GGATG 4 cut(s) 142, 922, 1014, 1194
BtsI GCAGTG 3 cut(s) 336, 457, 1217
BtsIMutI CAGTG 5 cut(s) 336, 336, 457, 743, 1217
Cac8I GCNNGC 7 cut(s) 213, 485, 510, 895, 979, 991, 1092
CfoI GCGC 1 cut(s) 475
Cfr10I RCCGGY 1 cut(s) 1233
Cfr13I GGNCC 5 cut(s) 117, 190, 278, 825, 877
CseI GACGC 3 cut(s) 319, 803, 1007
Csp6I GTAC 1 cut(s) 766
CspCI CAANNNNNGTGG 2 cut(s) 875, 910
CviAII CATG 4 cut(s) 105, 126, 647, 1229
CviQI GTAC 1 cut(s) 766
DdeI CTNAG 3 cut(s) 274, 889, 1132
EaeI YGGCCR 2 cut(s) 594, 1231
Eam1104I CTCTTC 2 cut(s) 489, 540
EarI CTCTTC 2 cut(s) 489, 540
EciI GGCGGA 4 cut(s) 42, 741, 1169, 1188
Ecl136II GAGCTC 1 cut(s) 1131
Eco24I GRGCYC 1 cut(s) 1133
Eco31I GGTCTC 2 cut(s) 214, 1210
Eco53kI GAGCTC 1 cut(s) 1131
Eco57I CTGAAG 4 cut(s) 195, 312, 579, 651
Eco91I GGTNACC 1 cut(s) 1120
EcoICRI GAGCTC 1 cut(s) 1131
EcoNI CCTNNNNNAGG 1 cut(s) 1076
EcoO109I RGGNCCY 1 cut(s) 190
EcoO65I GGTNACC 1 cut(s) 1120
EcoRII CCWGG 1 cut(s) 1124
EcoT22I ATGCAT 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 1133
FaeI CATG 4 cut(s) 108, 129, 650, 1232
FaqI GGGAC 3 cut(s) 125, 369, 1239
FatI CATG 4 cut(s) 104, 125, 646, 1228
FauI CCCGC 2 cut(s) 700, 1216
Fnu4HI GCNGC 7 cut(s) 416, 525, 528, 531, 567, 673, 987
FokI GGATG 4 cut(s) 149, 929, 1021, 1201
FriOI GRGCYC 1 cut(s) 1133
Fsp4HI GCNGC 7 cut(s) 416, 525, 528, 531, 567, 673, 987
FspBI CTAG 6 cut(s) 234, 315, 584, 990, 1073, 1091
GlaI GCGC 1 cut(s) 474
GluI GCNGC 7 cut(s) 416, 525, 528, 531, 567, 673, 987
GsaI CCCAGC 2 cut(s) 415, 942
GsuI CTGGAG 1 cut(s) 1147
HaeIII GGCC 8 cut(s) 119, 191, 280, 500, 596, 826, 878, 1233
HapII CCGG 4 cut(s) 64, 251, 1115, 1234
HgaI GACGC 3 cut(s) 319, 803, 1007
HhaI GCGC 1 cut(s) 475
Hin1I GRCGYC 3 cut(s) 46, 311, 795
Hin1II CATG 4 cut(s) 108, 129, 650, 1232
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HincII GTYRAC 1 cut(s) 997
HindII GTYRAC 1 cut(s) 997
HinfI GANTC 5 cut(s) 266, 405, 662, 748, 1178
HpaII CCGG 4 cut(s) 64, 251, 1115, 1234
HphI GGTGA 2 cut(s) 1132, 1211
Hpy166II GTNNAC 1 cut(s) 997
Hpy188I TCNGA 4 cut(s) 51, 346, 445, 822
Hpy188III TCNNGA 5 cut(s) 42, 64, 703, 866, 1163
Hpy8I GTNNAC 1 cut(s) 997
Hpy99I CGWCG 2 cut(s) 48, 51
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 3 cut(s) 46, 362, 655
HpyCH4V TGCA 8 cut(s) 104, 200, 215, 341, 418, 569, 951, 986
HpyF3I CTNAG 3 cut(s) 274, 889, 1132
HpySE526I ACGT 3 cut(s) 46, 362, 655
Hsp92I GRCGYC 3 cut(s) 46, 311, 795
Hsp92II CATG 4 cut(s) 108, 129, 650, 1232
HspAI GCGC 1 cut(s) 473
Kpn2I TCCGGA 1 cut(s) 63
LmnI GCTCC 3 cut(s) 434, 1128, 1156
Lsp1109I GCAGC 6 cut(s) 402, 536, 539, 542, 553, 998
LweI GCATC 6 cut(s) 22, 91, 187, 310, 350, 907
MaeI CTAG 6 cut(s) 234, 315, 584, 990, 1073, 1091
MaeII ACGT 3 cut(s) 46, 362, 655
MaeIII GTNAC 2 cut(s) 283, 1120
MboII GAAGA 5 cut(s) 318, 359, 506, 557, 657
MhlI GDGCHC 3 cut(s) 338, 1115, 1133
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 3 cut(s) 539, 731, 759
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 3 cut(s) 260, 414, 1172
MmeI TCCRAC 1 cut(s) 29
Mox20I TGGCCA 1 cut(s) 596
Mph1103I ATGCAT 1 cut(s) 106
MroI TCCGGA 1 cut(s) 63
MscI TGGCCA 1 cut(s) 596
MseI TTAA 2 cut(s) 590, 726
Msp20I TGGCCA 1 cut(s) 596
MspA1I CMGCKG 8 cut(s) 415, 695, 942, 977, 1136, 1197, 1223, 1245
MspI CCGG 4 cut(s) 64, 251, 1115, 1234
MspR9I CCNGG 2 cut(s) 1115, 1126
MvaI CCWGG 1 cut(s) 1126
NciI CCSGG 1 cut(s) 1115
NheI GCTAGC 2 cut(s) 989, 1090
NlaIII CATG 4 cut(s) 108, 129, 650, 1232
NlaIV GGNNCC 5 cut(s) 430, 963, 1070, 1112, 1158
NmeAIII GCCGAG 1 cut(s) 742
NmuCI GTSAC 2 cut(s) 283, 1120
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 1 cut(s) 108
PfeI GAWTC 2 cut(s) 662, 748
PkrI GCNGC 7 cut(s) 417, 526, 529, 532, 568, 674, 988
PleI GAGTC 3 cut(s) 260, 413, 1172
PpsI GAGTC 3 cut(s) 260, 413, 1172
Psp124BI GAGCTC 1 cut(s) 1133
Psp6I CCWGG 1 cut(s) 1124
PspEI GGTNACC 1 cut(s) 1120
PspFI CCCAGC 2 cut(s) 411, 938
PspGI CCWGG 1 cut(s) 1124
PspN4I GGNNCC 5 cut(s) 430, 963, 1070, 1112, 1158
PspPI GGNCC 5 cut(s) 117, 190, 278, 825, 877
PvuII CAGCTG 3 cut(s) 415, 942, 977
RsaI GTAC 1 cut(s) 767
RsaNI GTAC 1 cut(s) 766
SacI GAGCTC 1 cut(s) 1133
SaqAI TTAA 2 cut(s) 590, 726
SatI GCNGC 7 cut(s) 416, 525, 528, 531, 567, 673, 987
Sau96I GGNCC 5 cut(s) 117, 190, 278, 825, 877
SchI GAGTC 3 cut(s) 260, 414, 1172
ScrFI CCNGG 2 cut(s) 1115, 1126
SduI GDGCHC 3 cut(s) 338, 1115, 1133
SfaNI GCATC 6 cut(s) 22, 91, 187, 310, 350, 907
SmlI CTYRAG 2 cut(s) 864, 1161
SmoI CTYRAG 2 cut(s) 864, 1161
Sse9I AATT 3 cut(s) 539, 731, 759
SspMI CTAG 6 cut(s) 234, 315, 584, 990, 1073, 1091
SstI GAGCTC 1 cut(s) 1133
StyD4I CCNGG 2 cut(s) 1113, 1124
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 3 cut(s) 49, 365, 658
TaqI TCGA 3 cut(s) 157, 195, 834
TasI AATT 3 cut(s) 539, 731, 759
TauI GCSGC 1 cut(s) 675
TfiI GAWTC 2 cut(s) 662, 748
Tru1I TTAA 2 cut(s) 590, 726
Tru9I TTAA 2 cut(s) 590, 726
TscAI CASTG 5 cut(s) 336, 343, 457, 750, 1217
TseFI GTSAC 2 cut(s) 283, 1120
TseI GCWGC 6 cut(s) 415, 524, 527, 530, 566, 986
Tsp45I GTSAC 2 cut(s) 283, 1120
TspGWI ACGGA 2 cut(s) 655, 1010
TspRI CASTG 5 cut(s) 336, 343, 457, 750, 1217
XagI CCTNNNNNAGG 1 cut(s) 1076
XapI RAATTY 1 cut(s) 731
XceI RCATGY 1 cut(s) 108
XspI CTAG 6 cut(s) 234, 315, 584, 990, 1073, 1091
ZraI GACGTC 1 cut(s) 47
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.