Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001846.1

Orthogroup ID

OG0000949

Physical Location & Seq

Genomic Coordinates Reverse (-)

17723 .. 18762

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001846.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgcaaacccactattctagtgtagaaaggcttattatggaggcatgttggcaaggccgggaaggtggcttcccacgaccgtggcagagcttgaacattgggctacgggatgcaggtcgtggttgggtcccaccatggcttgtgggcccttctaagagggtgttacttatgcttgttgatgtagcaaatcctccatattgttggaggtatgtacaagttcaatggggacatggtttcaaattctctattttctactctacagcatactatgtatttgcagctgaatctgcaggtagaaagattccaattgcttatctggagagaatcaaggatgatttcaacagaagatatgctggtggaaaagctgggactgcaacatccaatggactgaacaaagagtttgggtttcttgatgaagattatggtgcagcaattggttttccattaatatgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

151

Amino Acids

17.11

Weight (kDa)

9.03

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16861 FvH4_3g30530 FvH4_4g10331
prunus_persica	Prupe.2G142600_v2.0.a1 Prupe.5G153300_v2.0.a1
pyrus_communis	pycom11g20890
rosa_chinensis	RchiOBHm_Chr1g0344221 RchiOBHm_Chr2g0147381 RchiOBHm_Chr2g0154091 RchiOBHm_Chr4g0394431 RchiOBHm_Chr4g0421521 RchiOBHm_Chr6g0274071 RchiOBHm_Chr6g0277071
rosa_laevigata	RLG00000014255
rosa_multiflora	Rmu_co8240637.1_g000001 Rmu_co8485309.1_g000002 Rmu_sc0000455.1_g000055 Rmu_sc0001846.1_g000005 Rmu_sc0002281.1_g000023 Rmu_sc0002772.1_g000021 Rmu_sc0003316.1_g000009 Rmu_sc0004915.1_g000013 Rmu_sc0005465.1_g000001 Rmu_sc0007612.1_g000028 Rmu_sc0009481.1_g000011 Rmu_sc0011709.1_g000004 Rmu_sc0012179.1_g000003 Rmu_sc0014556.1_g000001 Rmu_sc0018308.1_g000001 Rmu_sc0033766.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021100 Rroxscaffold_2G00111780 Rroxscaffold_3G00254520 Rroxscaffold_4G00318760 Rroxscaffold_4G00318770 Rroxscaffold_5G00364750 Rroxscaffold_5G00377430 Rroxscaffold_6G00423030 Rroxscaffold_7G00203610 Rroxscaffold_7G00203960
rosa_rugosa	Rorug01G0056200 Rorug07G0209200
rosa_samantha	Rh1AG072800 Rh1BG059400 Rh1BG092000 Rh1CG071900 Rh2BG331300 Rh2BG512600 Rh2BG515900 Rh2BG517600 Rh2DG120700 Rh2DG420800 Rh2DG433100 Rh2DG524200 Rh2DG529300 Rh4AG003200 Rh4BG121400 Rh4CG032100 Rh4CG052300 Rh5BG244400 Rh5CG363100 Rh6AG117400 Rh7BG296900 Rh7BG452300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	104, 281
AcsI	RAATTY	1 cut(s)	239
AfaI	GTAC	1 cut(s)	213
AgsI	TTSAA	4 cut(s)	94, 221, 238, 340
AleI	CACNNNNGTG	1 cut(s)	79
AluBI	AGCT	3 cut(s)	90, 281, 365
AluI	AGCT	3 cut(s)	90, 281, 365
AoxI	GGCC	2 cut(s)	55, 145
ApaI	GGGCCC	1 cut(s)	149
ApeKI	GCWGC	2 cut(s)	278, 428
ApoI	RAATTY	1 cut(s)	239
AseI	ATTAAT	1 cut(s)	446
AspS9I	GGNCC	3 cut(s)	127, 145, 146
AsuC2I	CCSGG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	149
BbvI	GCAGC	2 cut(s)	290, 440
BcnI	CCSGG	1 cut(s)	59
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	2 cut(s)	258, 288
BfuAI	ACCTGC	2 cut(s)	104, 281
BisI	GCNGC	2 cut(s)	279, 429
BlsI	GCNGC	2 cut(s)	280, 430
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	127, 145, 146
BmiI	GGNNCC	3 cut(s)	128, 129, 147
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	100
BpmI	CTGGAG	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	80, 134
BseDI	CCNNGG	2 cut(s)	80, 134
BseGI	GGATG	3 cut(s)	115, 337, 377
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	290, 440
BseYI	CCCAGC	1 cut(s)	365
BsgI	GTGCAG	1 cut(s)	447
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	57, 147
BsiEI	CGRYCG	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	58
BslFI	GGGAC	3 cut(s)	113, 240, 382
BsmFI	GGGAC	3 cut(s)	113, 240, 382
BsnI	GGCC	2 cut(s)	57, 147
Bsp120I	GGGCCC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp1407I	TGTACA	1 cut(s)	211
Bsp19I	CCATGG	1 cut(s)	134
BspANI	GGCC	2 cut(s)	57, 147
BspLI	GGNNCC	3 cut(s)	128, 129, 147
BspMAI	CTGCAG	1 cut(s)	292
BspMI	ACCTGC	2 cut(s)	104, 281
BsrGI	TGTACA	1 cut(s)	211
BssECI	CCNNGG	2 cut(s)	80, 134
BssT1I	CCWWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	81
BstAUI	TGTACA	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	2 cut(s)	80, 134
BstF5I	GGATG	3 cut(s)	115, 337, 377
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 371
BstNSI	RCATGY	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	57
BstSFI	CTRYAG	2 cut(s)	258, 288
BstSLI	GKGCMC	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	290, 440
BstXI	CCANNNNNNTGG	2 cut(s)	81, 201
BsuRI	GGCC	2 cut(s)	57, 147
BtgI	CCRYGG	2 cut(s)	80, 134
BtsCI	GGATG	3 cut(s)	115, 337, 377
BveI	ACCTGC	2 cut(s)	104, 281
Cfr13I	GGNCC	3 cut(s)	127, 145, 146
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	3 cut(s)	45, 135, 230
CviJI	RGCY	9 cut(s)	31, 57, 69, 90, 103, 139, 147, 281, 365
CviKI_1	RGCY	9 cut(s)	31, 57, 69, 90, 103, 139, 147, 281, 365
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	127
EcoO109I	RGGNCCY	2 cut(s)	127, 146
EcoT14I	CCWWGG	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	3 cut(s)	48, 138, 233
FaqI	GGGAC	3 cut(s)	113, 240, 382
FatI	CATG	3 cut(s)	44, 134, 229
Fnu4HI	GCNGC	2 cut(s)	279, 429
FokI	GGATG	3 cut(s)	122, 344, 364
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	2 cut(s)	279, 429
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	2 cut(s)	279, 429
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	57, 147
HapII	CCGG	1 cut(s)	58
Hin1II	CATG	3 cut(s)	48, 138, 233
HinfI	GANTC	3 cut(s)	284, 301, 324
HpaII	CCGG	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	317, 410
HpyAV	CCTTC	2 cut(s)	56, 159
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	6 cut(s)	4, 113, 278, 290, 374, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 371
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	48, 138, 233
KflI	GGGWCCC	1 cut(s)	127
LpnPI	CCDG	6 cut(s)	71, 99, 276, 302, 339, 351
Lsp1109I	GCAGC	2 cut(s)	290, 440
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	162
MboII	GAAGA	2 cut(s)	357, 428
MfeI	CAATTG	2 cut(s)	306, 432
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	3 cut(s)	239, 306, 432
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	4 cut(s)	34, 150, 198, 201
MseI	TTAA	1 cut(s)	446
MslI	CAYNNNNRTG	2 cut(s)	79, 448
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	58
MspR9I	CCNGG	1 cut(s)	59
MunI	CAATTG	2 cut(s)	306, 432
MwoI	GCNNNNNNNGC	2 cut(s)	287, 371
NciI	CCSGG	1 cut(s)	59
NcoI	CCATGG	1 cut(s)	134
NlaIII	CATG	3 cut(s)	48, 138, 233
NlaIV	GGNNCC	3 cut(s)	128, 129, 147
NspI	RCATGY	1 cut(s)	48
OliI	CACNNNNGTG	1 cut(s)	79
PfeI	GAWTC	3 cut(s)	284, 301, 324
PkrI	GCNGC	2 cut(s)	280, 430
PpuMI	RGGWCCY	1 cut(s)	127
PshBI	ATTAAT	1 cut(s)	446
Psp5II	RGGWCCY	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	365
PspN4I	GGNNCC	3 cut(s)	128, 129, 147
PspOMI	GGGCCC	1 cut(s)	145
PspPI	GGNCC	3 cut(s)	127, 145, 146
PspPPI	RGGWCCY	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	2 cut(s)	79, 448
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	2 cut(s)	279, 429
Sau96I	GGNCC	3 cut(s)	127, 145, 146
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	7 cut(s)	67, 92, 118, 209, 283, 295, 367
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	2 cut(s)	258, 288
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	2 cut(s)	79, 448
Sse9I	AATT	3 cut(s)	239, 306, 432
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	81
TasI	AATT	3 cut(s)	239, 306, 432
TatI	WGTACW	1 cut(s)	211
TfiI	GAWTC	3 cut(s)	284, 301, 324
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TseI	GCWGC	2 cut(s)	278, 428
TspDTI	ATGAA	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	127
VspI	ATTAAT	1 cut(s)	446
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	1 cut(s)	48
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.