Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002281.1

Orthogroup ID

OG0000949

Physical Location & Seq

Genomic Coordinates Forward (+)

91329 .. 92132

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002281.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atggcaccacaagttaccgtgttcttccacaggctcccaacagttggcgacaacacaaaaaggactggtcatcgtatgtcctttgtgattggtcatgcacccatcactcgaagcatgacgaagcccaagcttggagccaaacaggacaacaaggctgtgaaggttgtcaagactcagatcgttaagaccccttcaaagaatgccatcagaaaccagagaaaaagagccgccagggctcagaggaaaagagacgctgaggctaaaacaattgaggccatcttggcggaaattgctcagttgacaccaactctaatcaaaaccaccaacgctcccaagactcctttagctactaaggtccacatgccagctcatttcatggttggcactattccggtctatctacctagcactgagagtgtgatggtgacctctattgaggaaaaggatgaagacgaagcttcagtggctcaagagtccaccacctcttcacaaagagttatcatacgggaaggtcaaaacatcgacccaaagcaaatagctgaaggggtaatcaaggccctcgatgcaccatcaaagcgtgcagggaggccaaagggggctagaaacaaagagtatcaggttttcaaagatgactcatactcagggccagtcacccgtaataagactcacaaaatgacgtctagagatgcttcttcagtgggtacctcatcagaagatgagcggcagacgtggaaagataatccactctatgagacatctgtaaaagaaagtgtctcccagctgcaaactgacggctcctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

267

Amino Acids

29.45

Weight (kDa)

9.93

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16861 FvH4_3g30530 FvH4_4g10331
prunus_persica	Prupe.2G142600_v2.0.a1 Prupe.5G153300_v2.0.a1
pyrus_communis	pycom11g20890
rosa_chinensis	RchiOBHm_Chr1g0344221 RchiOBHm_Chr2g0147381 RchiOBHm_Chr2g0154091 RchiOBHm_Chr4g0394431 RchiOBHm_Chr4g0421521 RchiOBHm_Chr6g0274071 RchiOBHm_Chr6g0277071
rosa_laevigata	RLG00000014255
rosa_multiflora	Rmu_co8240637.1_g000001 Rmu_co8485309.1_g000002 Rmu_sc0000455.1_g000055 Rmu_sc0001846.1_g000005 Rmu_sc0002281.1_g000023 Rmu_sc0002772.1_g000021 Rmu_sc0003316.1_g000009 Rmu_sc0004915.1_g000013 Rmu_sc0005465.1_g000001 Rmu_sc0007612.1_g000028 Rmu_sc0009481.1_g000011 Rmu_sc0011709.1_g000004 Rmu_sc0012179.1_g000003 Rmu_sc0014556.1_g000001 Rmu_sc0018308.1_g000001 Rmu_sc0033766.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021100 Rroxscaffold_2G00111780 Rroxscaffold_3G00254520 Rroxscaffold_4G00318760 Rroxscaffold_4G00318770 Rroxscaffold_5G00364750 Rroxscaffold_5G00377430 Rroxscaffold_6G00423030 Rroxscaffold_7G00203610 Rroxscaffold_7G00203960
rosa_rugosa	Rorug01G0056200 Rorug07G0209200
rosa_samantha	Rh1AG072800 Rh1BG059400 Rh1BG092000 Rh1CG071900 Rh2BG331300 Rh2BG512600 Rh2BG515900 Rh2BG517600 Rh2DG120700 Rh2DG420800 Rh2DG433100 Rh2DG524200 Rh2DG529300 Rh4AG003200 Rh4BG121400 Rh4CG032100 Rh4CG052300 Rh5BG244400 Rh5CG363100 Rh6AG117400 Rh7BG296900 Rh7BG452300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	680
Acc65I	GGTACC	1 cut(s)	701
AccB1I	GGYRCC	2 cut(s)	4, 701
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	721
AciI	CCGC	3 cut(s)	228, 284, 721
AcuI	CTGAAG	3 cut(s)	444, 561, 678
AcyI	GRCGYC	1 cut(s)	677
AfaI	GTAC	1 cut(s)	703
AfiI	CCNNNNNNNGG	2 cut(s)	44, 131
AgsI	TTSAA	2 cut(s)	195, 625
AjiI	CACGTC	1 cut(s)	729
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	6 cut(s)	130, 347, 368, 458, 539, 781
AluI	AGCT	6 cut(s)	130, 347, 368, 458, 539, 781
Alw26I	GTCTC	3 cut(s)	243, 746, 778
AoxI	GGCC	4 cut(s)	273, 555, 587, 644
ApeKI	GCWGC	1 cut(s)	781
Asp718I	GGTACC	1 cut(s)	701
AspS9I	GGNCC	3 cut(s)	355, 556, 644
AsuHPI	GGTGA	2 cut(s)	436, 643
AvaII	GGWCC	1 cut(s)	355
BanI	GGYRCC	2 cut(s)	4, 701
BanII	GRGCYC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	456
BbvCI	CCTCAGC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	768
BccI	CCATC	5 cut(s)	110, 212, 284, 415, 577
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	3 cut(s)	243, 746, 778
BfaI	CTAG	3 cut(s)	405, 600, 681
BglI	GCCNNNNNGGC	2 cut(s)	233, 281
BisI	GCNGC	3 cut(s)	228, 722, 782
BlsI	GCNGC	3 cut(s)	229, 723, 783
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	355
BmgBI	CACGTC	1 cut(s)	729
BmgT120I	GGNCC	3 cut(s)	355, 556, 644
BmiI	GGNNCC	5 cut(s)	6, 35, 136, 703, 796
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	553, 676
BpiI	GAAGAC	1 cut(s)	456
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	677
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	391
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 131
Bse1I	ACTGG	2 cut(s)	70, 647
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	2 cut(s)	44, 131
BseMII	CTCAG	6 cut(s)	188, 246, 251, 308, 402, 654
BseNI	ACTGG	2 cut(s)	70, 647
BseRI	GAGGAG	1 cut(s)	787
BseXI	GCAGC	1 cut(s)	768
BseYI	CCCAGC	1 cut(s)	777
BsgI	GTGCAG	1 cut(s)	600
BshFI	GGCC	4 cut(s)	275, 557, 589, 646
BshNI	GGYRCC	2 cut(s)	4, 701
BsiSI	CCGG	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	44, 131
BsmAI	GTCTC	3 cut(s)	243, 746, 778
BsmBI	CGTCTC	1 cut(s)	243
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	4 cut(s)	275, 557, 589, 646
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	3 cut(s)	228, 284, 721
BspANI	GGCC	4 cut(s)	275, 557, 589, 646
BspCNI	CTCAG	6 cut(s)	187, 247, 250, 307, 403, 653
BspLI	GGNNCC	5 cut(s)	6, 35, 136, 703, 796
BspT107I	GGYRCC	2 cut(s)	4, 701
BsrBI	CCGCTC	1 cut(s)	721
BsrI	ACTGG	2 cut(s)	70, 647
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	1 cut(s)	177
BssNI	GRCGYC	1 cut(s)	677
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	19, 43
Bst6I	CTCTTC	1 cut(s)	490
BstACI	GRCGYC	1 cut(s)	677
BstC8I	GCNNGC	2 cut(s)	366, 579
BstDEI	CTNAG	7 cut(s)	174, 237, 255, 294, 351, 411, 640
BstEII	GGTNACC	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	451
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	3 cut(s)	243, 746, 778
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 281, 290, 464, 563
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	364
BstPI	GGTNACC	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	768
BstV2I	GAAGAC	1 cut(s)	456
BsuRI	GGCC	4 cut(s)	275, 557, 589, 646
BtrI	CACGTC	1 cut(s)	729
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	3 cut(s)	408, 468, 702
Cac8I	GCNNGC	2 cut(s)	366, 579
Cfr13I	GGNCC	3 cut(s)	355, 556, 644
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	702
CviAII	CATG	4 cut(s)	95, 115, 361, 376
CviQI	GTAC	1 cut(s)	702
DdeI	CTNAG	7 cut(s)	174, 237, 255, 294, 351, 411, 640
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	490
EciI	GGCGGA	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	3 cut(s)	444, 561, 678
Eco91I	GGTNACC	1 cut(s)	424
EcoO109I	RGGNCCY	1 cut(s)	556
EcoO65I	GGTNACC	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	238
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	4 cut(s)	98, 118, 364, 379
FaiI	YATR	9 cut(s)	77, 96, 116, 362, 377, 503, 637, 750, 802
FatI	CATG	4 cut(s)	94, 114, 360, 375
Fnu4HI	GCNGC	3 cut(s)	228, 722, 782
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	3 cut(s)	228, 722, 782
FspBI	CTAG	3 cut(s)	405, 600, 681
GluI	GCNGC	3 cut(s)	228, 722, 782
GsaI	CCCAGC	1 cut(s)	781
HaeIII	GGCC	4 cut(s)	275, 557, 589, 646
HapII	CCGG	1 cut(s)	392
HgaI	GACGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	677
Hin1II	CATG	4 cut(s)	98, 118, 364, 379
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HindIII	AAGCTT	2 cut(s)	128, 456
HinfI	GANTC	5 cut(s)	172, 337, 473, 632, 664
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	2 cut(s)	436, 643
Hpy166II	GTNNAC	3 cut(s)	300, 358, 477
Hpy188I	TCNGA	4 cut(s)	177, 209, 240, 712
Hpy188III	TCNNGA	3 cut(s)	169, 470, 681
Hpy8I	GTNNAC	3 cut(s)	300, 358, 477
HpyAV	CCTTC	4 cut(s)	154, 201, 503, 536
HpyCH4III	ACNGT	2 cut(s)	19, 43
HpyCH4IV	ACGT	2 cut(s)	677, 728
HpyCH4V	TGCA	4 cut(s)	98, 566, 581, 784
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 281, 290, 464, 563
HpyF3I	CTNAG	7 cut(s)	174, 237, 255, 294, 351, 411, 640
HpySE526I	ACGT	2 cut(s)	677, 728
Hsp92I	GRCGYC	1 cut(s)	677
Hsp92II	CATG	4 cut(s)	98, 118, 364, 379
KpnI	GGTACC	1 cut(s)	705
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	4 cut(s)	39, 134, 334, 800
Lsp1109I	GCAGC	1 cut(s)	768
LweI	GCATC	2 cut(s)	553, 676
MaeI	CTAG	3 cut(s)	405, 600, 681
MaeII	ACGT	2 cut(s)	677, 728
MaeIII	GTNAC	3 cut(s)	13, 424, 649
MalI	GATC	1 cut(s)	179
MbiI	CCGCTC	1 cut(s)	721
MboI	GATC	1 cut(s)	177
MboII	GAAGA	5 cut(s)	16, 461, 477, 684, 725
MfeI	CAATTG	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	2 cut(s)	267, 288
MlyI	GAGTC	5 cut(s)	166, 331, 482, 626, 658
MnlI	CCTC	9 cut(s)	234, 250, 265, 430, 439, 493, 569, 579, 715
MseI	TTAA	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	781
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	5 cut(s)	233, 281, 290, 464, 563
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	4 cut(s)	98, 118, 364, 379
NlaIV	GGNNCC	5 cut(s)	6, 35, 136, 703, 796
NmuCI	GTSAC	2 cut(s)	424, 649
NspI	RCATGY	1 cut(s)	364
PctI	GAATGC	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	3 cut(s)	229, 723, 783
PleI	GAGTC	5 cut(s)	166, 331, 481, 626, 658
PpsI	GAGTC	5 cut(s)	166, 331, 481, 626, 658
Psp6I	CCWGG	1 cut(s)	230
PspEI	GGTNACC	1 cut(s)	424
PspFI	CCCAGC	1 cut(s)	777
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	5 cut(s)	6, 35, 136, 703, 796
PspPI	GGNCC	3 cut(s)	355, 556, 644
PvuII	CAGCTG	1 cut(s)	781
RsaI	GTAC	1 cut(s)	703
RsaNI	GTAC	1 cut(s)	702
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	3 cut(s)	228, 722, 782
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	3 cut(s)	355, 556, 644
SchI	GAGTC	5 cut(s)	166, 331, 482, 626, 658
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	238
SfaNI	GCATC	2 cut(s)	553, 676
SinI	GGWCC	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
Sse9I	AATT	2 cut(s)	267, 288
SsiI	CCGC	3 cut(s)	228, 284, 721
SspMI	CTAG	3 cut(s)	405, 600, 681
StyD4I	CCNGG	1 cut(s)	230
TaaI	ACNGT	2 cut(s)	19, 43
TaiI	ACGT	2 cut(s)	680, 731
TaqI	TCGA	3 cut(s)	109, 522, 561
TasI	AATT	2 cut(s)	267, 288
TauI	GCSGC	2 cut(s)	230, 724
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	3 cut(s)	415, 468, 702
TseFI	GTSAC	2 cut(s)	424, 649
TseI	GCWGC	1 cut(s)	781
Tsp45I	GTSAC	2 cut(s)	424, 649
TspDTI	ATGAA	2 cut(s)	364, 462
TspRI	CASTG	3 cut(s)	415, 468, 702
Van91I	CCANNNNNTGG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	355
XbaI	TCTAGA	1 cut(s)	680
XceI	RCATGY	1 cut(s)	364
XspI	CTAG	3 cut(s)	405, 600, 681
ZraI	GACGTC	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.