Rh2DG524200

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000949
Physical Location & Seq
Reverse (-)
74954178 .. 74954669
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG524200.1

Sequence Viewer

Length: 492 bp
ATGGTTGGCACTATCCCGGTCTATCTACCTAGCACTGAGAGTGTGATGGTGACCTCTACTGAGGAGAAGGATGAAGACGAAGCTTCAGTGGCTCAAGAGTCCACTACCTCTTCACAAAGAGTTATCATACGGGAAGGTCAAAACATCGACCCAAAGCAAATAGTTGAAGGGGTAATCAAGGCCCTCGATGCACCATCAAGGCGTGCAGGGAGGCCAAAGGGGGCTAGAAACAAAGAGTATCCGGTTTTCAAAGATGACTCTTACTCAGGGCCAGTCACCCGCAACAAGGCTCACAAAATGATGCCTAGAGATGCTTCTTCAGTGGGTACTACATCAGAAGATAAGGGGCAAACGTGGAAAGATAATCCACTCTATGAGACATCTGTAAAAGAAAGAGTCTCCCAGTTGCAAATTGACGGCTCCTCACAGGGTTCAGAAAGCAGTGAAAGCAGAGAGCTCGATGGTGCACAAGTGCTGGTAGCTAACCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

163

Amino Acids

17.77

Weight (kDa)

5.04

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 280
AcuI CTGAAG 2 cut(s) 69, 303
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 2 cut(s) 167, 250
AluBI AGCT 3 cut(s) 83, 457, 482
AluI AGCT 3 cut(s) 83, 457, 482
Alw21I GWGCWC 2 cut(s) 459, 469
Alw26I GTCTC 2 cut(s) 371, 403
Alw44I GTGCAC 1 cut(s) 465
AoxI GGCC 3 cut(s) 180, 212, 269
ApaLI GTGCAC 1 cut(s) 465
AspS9I GGNCC 2 cut(s) 181, 269
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 61, 268
BaeGI GKGCMC 1 cut(s) 469
BanII GRGCYC 1 cut(s) 459
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 2 cut(s) 459, 469
BccI CCATC 3 cut(s) 40, 202, 455
BceAI ACGGC 1 cut(s) 433
BcgI CGANNNNNNTGC 2 cut(s) 439, 473
BciVI GTATCC 1 cut(s) 249
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 2 cut(s) 371, 403
BfaI CTAG 3 cut(s) 30, 225, 306
BfuI GTATCC 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 17
BmgT120I GGNCC 2 cut(s) 181, 269
BmiI GGNNCC 1 cut(s) 421
BmrFI CCNGG 1 cut(s) 17
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 3 cut(s) 178, 291, 301
BmuI ACTGGG 1 cut(s) 397
BpiI GAAGAC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 17
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse1I ACTGG 2 cut(s) 272, 403
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 3 cut(s) 27, 51, 279
BseNI ACTGG 2 cut(s) 272, 403
BseRI GAGGAG 2 cut(s) 77, 412
BseSI GKGCMC 1 cut(s) 469
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 3 cut(s) 182, 214, 271
BsiHKAI GWGCWC 2 cut(s) 459, 469
BsiSI CCGG 2 cut(s) 17, 242
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 2 cut(s) 371, 403
BsnI GGCC 3 cut(s) 182, 214, 271
Bsp1286I GDGCHC 2 cut(s) 459, 469
BspACI CCGC 1 cut(s) 280
BspANI GGCC 3 cut(s) 182, 214, 271
BspCNI CTCAG 3 cut(s) 28, 52, 278
BspLI GGNNCC 1 cut(s) 421
BsrI ACTGG 2 cut(s) 272, 403
Bst6I CTCTTC 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 3 cut(s) 36, 60, 265
BstEII GGTNACC 1 cut(s) 49
BstF5I GGATG 1 cut(s) 76
BstMAI GTCTC 2 cut(s) 371, 403
BstMWI GCNNNNNNNGC 3 cut(s) 89, 188, 447
BstPI GGTNACC 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 469
BstV2I GAAGAC 1 cut(s) 81
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 3 cut(s) 182, 214, 271
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 448
BtsIMutI CAGTG 4 cut(s) 33, 93, 327, 448
Cac8I GCNNGC 1 cut(s) 204
Cfr13I GGNCC 2 cut(s) 181, 269
Csp6I GTAC 1 cut(s) 327
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 3 cut(s) 36, 60, 265
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Ecl136II GAGCTC 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 459
Eco53kI GAGCTC 1 cut(s) 457
Eco57I CTGAAG 2 cut(s) 69, 303
Eco91I GGTNACC 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 457
EcoO109I RGGNCCY 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 459
FaiI YATR 2 cut(s) 128, 375
FauI CCCGC 1 cut(s) 287
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 459
FspBI CTAG 3 cut(s) 30, 225, 306
HaeIII GGCC 3 cut(s) 182, 214, 271
HapII CCGG 2 cut(s) 17, 242
HindIII AAGCTT 1 cut(s) 81
HinfI GANTC 3 cut(s) 98, 257, 396
HpaII CCGG 2 cut(s) 17, 242
HphI GGTGA 2 cut(s) 61, 268
Hpy166II GTNNAC 2 cut(s) 102, 467
Hpy188I TCNGA 2 cut(s) 337, 436
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 2 cut(s) 102, 467
HpyAV CCTTC 3 cut(s) 61, 128, 161
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 4 cut(s) 191, 206, 409, 467
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 188, 447
HpyF3I CTNAG 3 cut(s) 36, 60, 265
HpySE526I ACGT 1 cut(s) 353
LmnI GCTCC 1 cut(s) 425
LpnPI CCDG 8 cut(s) 30, 192, 252, 255, 285, 413, 416, 461
LweI GCATC 3 cut(s) 178, 291, 301
MaeI CTAG 3 cut(s) 30, 225, 306
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 2 cut(s) 49, 274
MboII GAAGA 4 cut(s) 86, 102, 309, 350
MhlI GDGCHC 2 cut(s) 459, 469
MluCI AATT 1 cut(s) 411
MlyI GAGTC 3 cut(s) 107, 251, 405
MnlI CCTC 6 cut(s) 55, 64, 118, 194, 204, 433
MspI CCGG 2 cut(s) 17, 242
MspR9I CCNGG 1 cut(s) 17
MwoI GCNNNNNNNGC 3 cut(s) 89, 188, 447
NciI CCSGG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 421
NmuCI GTSAC 2 cut(s) 49, 274
PleI GAGTC 3 cut(s) 106, 251, 404
PpsI GAGTC 3 cut(s) 106, 251, 404
Psp124BI GAGCTC 1 cut(s) 459
PspEI GGTNACC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 421
PspPI GGNCC 2 cut(s) 181, 269
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SacI GAGCTC 1 cut(s) 459
Sau96I GGNCC 2 cut(s) 181, 269
SchI GAGTC 3 cut(s) 107, 251, 405
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 2 cut(s) 459, 469
SetI ASST 8 cut(s) 31, 56, 85, 110, 139, 356, 459, 484
SfaNI GCATC 3 cut(s) 178, 291, 301
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 1 cut(s) 411
SsiI CCGC 1 cut(s) 280
SspMI CTAG 3 cut(s) 30, 225, 306
SstI GAGCTC 1 cut(s) 459
StyD4I CCNGG 1 cut(s) 15
TaiI ACGT 1 cut(s) 356
TaqI TCGA 3 cut(s) 147, 186, 459
TasI AATT 1 cut(s) 411
TscAI CASTG 4 cut(s) 40, 93, 327, 448
TseFI GTSAC 2 cut(s) 49, 274
Tsp45I GTSAC 2 cut(s) 49, 274
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 4 cut(s) 40, 93, 327, 448
VneI GTGCAC 1 cut(s) 465
XspI CTAG 3 cut(s) 30, 225, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.