Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033766.1

Orthogroup ID

OG0000949

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 751

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033766.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggcaccacaagttaccgtgttcttccacaggctcccaacagttggcgacaacacaaaaagggctggtcatcgtatgtcctttgtgattggtcacgcacccatcactcgaagcatgacgaagcccaagcttggagccaaacaggacaacaaggctgtgaaggttgtcaagactcagatcgttaagaccccttcaaagaatgccatcagaaaccagagaaaaagagccgccagggctcagaggaaaagagacgctgaggctaaaacaattgaggccatcttggcggaaattgctcagttgacaccaactctggtcaaaaccaccaacgctcccaagactcctccagctactaaggtccacatgccagctcatttcatggttggcactattccgatctatctacctagcactgagagcgtaatggtgacctctactgaggagaaagatgaagacgaagcttcaggggctcaagagtccaccacctcttcacaaagagttatcatacgggaaggtcaaaacatcgacccaaagcaaatagctgaaggggtaatcaaggccctcgatgtgccatcaaggcgtgcagggaggccaaagggggctagaaacaaagagtatccggttttcaaagatgactcttactcaaggccagtcactcgcaacaaggctcacgaaatgacgcctagagatgcttcttcagtgggcactgcatcagaagatgagggacaaacgtggaaagataatccactctat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

250

Amino Acids

27.57

Weight (kDa)

10.02

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16861 FvH4_3g30530 FvH4_4g10331
prunus_persica	Prupe.2G142600_v2.0.a1 Prupe.5G153300_v2.0.a1
pyrus_communis	pycom11g20890
rosa_chinensis	RchiOBHm_Chr1g0344221 RchiOBHm_Chr2g0147381 RchiOBHm_Chr2g0154091 RchiOBHm_Chr4g0394431 RchiOBHm_Chr4g0421521 RchiOBHm_Chr6g0274071 RchiOBHm_Chr6g0277071
rosa_laevigata	RLG00000014255
rosa_multiflora	Rmu_co8240637.1_g000001 Rmu_co8485309.1_g000002 Rmu_sc0000455.1_g000055 Rmu_sc0001846.1_g000005 Rmu_sc0002281.1_g000023 Rmu_sc0002772.1_g000021 Rmu_sc0003316.1_g000009 Rmu_sc0004915.1_g000013 Rmu_sc0005465.1_g000001 Rmu_sc0007612.1_g000028 Rmu_sc0009481.1_g000011 Rmu_sc0011709.1_g000004 Rmu_sc0012179.1_g000003 Rmu_sc0014556.1_g000001 Rmu_sc0018308.1_g000001 Rmu_sc0033766.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021100 Rroxscaffold_2G00111780 Rroxscaffold_3G00254520 Rroxscaffold_4G00318760 Rroxscaffold_4G00318770 Rroxscaffold_5G00364750 Rroxscaffold_5G00377430 Rroxscaffold_6G00423030 Rroxscaffold_7G00203610 Rroxscaffold_7G00203960
rosa_rugosa	Rorug01G0056200 Rorug07G0209200
rosa_samantha	Rh1AG072800 Rh1BG059400 Rh1BG092000 Rh1CG071900 Rh2BG331300 Rh2BG512600 Rh2BG515900 Rh2BG517600 Rh2DG120700 Rh2DG420800 Rh2DG433100 Rh2DG524200 Rh2DG529300 Rh4AG003200 Rh4BG121400 Rh4CG032100 Rh4CG052300 Rh5BG244400 Rh5CG363100 Rh6AG117400 Rh7BG296900 Rh7BG452300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	44
AciI	CCGC	2 cut(s)	228, 284
AcuI	CTGAAG	3 cut(s)	444, 561, 678
AcyI	GRCGYC	1 cut(s)	677
AfiI	CCNNNNNNNGG	2 cut(s)	44, 131
AgsI	TTSAA	2 cut(s)	195, 625
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	5 cut(s)	130, 347, 368, 458, 539
AluI	AGCT	5 cut(s)	130, 347, 368, 458, 539
Alw26I	GTCTC	1 cut(s)	243
AoxI	GGCC	4 cut(s)	273, 555, 587, 644
AspS9I	GGNCC	2 cut(s)	355, 556
AsuHPI	GGTGA	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	704
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	238, 469
BbsI	GAAGAC	1 cut(s)	456
BbvCI	CCTCAGC	1 cut(s)	255
BccI	CCATC	4 cut(s)	110, 212, 284, 577
BciT130I	CCWGG	1 cut(s)	232
BciVI	GTATCC	1 cut(s)	624
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	3 cut(s)	405, 600, 681
BfuI	GTATCC	1 cut(s)	624
BglI	GCCNNNNNGGC	3 cut(s)	233, 281, 574
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	2 cut(s)	355, 556
BmiI	GGNNCC	3 cut(s)	6, 35, 136
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	676, 716
BpiI	GAAGAC	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	327
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	453, 625
BsaHI	GRCGYC	1 cut(s)	677
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	616
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 131
Bse1I	ACTGG	1 cut(s)	647
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	231
BseLI	CCNNNNNNNGG	2 cut(s)	44, 131
BseMII	CTCAG	6 cut(s)	188, 246, 251, 308, 402, 426
BseNI	ACTGG	1 cut(s)	647
BseRI	GAGGAG	2 cut(s)	330, 452
BseSI	GKGCMC	1 cut(s)	704
BsgI	GTGCAG	1 cut(s)	600
BshFI	GGCC	4 cut(s)	275, 557, 589, 646
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	617
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	2 cut(s)	44, 131
BsmAI	GTCTC	1 cut(s)	243
BsmBI	CGTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	735
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	4 cut(s)	275, 557, 589, 646
Bsp1286I	GDGCHC	3 cut(s)	238, 469, 704
Bsp143I	GATC	2 cut(s)	177, 393
BspACI	CCGC	2 cut(s)	228, 284
BspANI	GGCC	4 cut(s)	275, 557, 589, 646
BspCNI	CTCAG	6 cut(s)	187, 247, 250, 307, 403, 427
BspLI	GGNNCC	3 cut(s)	6, 35, 136
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	647
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	177, 393
BssNI	GRCGYC	1 cut(s)	677
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	19, 43
Bst6I	CTCTTC	1 cut(s)	490
BstACI	GRCGYC	1 cut(s)	677
BstC8I	GCNNGC	2 cut(s)	366, 579
BstDEI	CTNAG	7 cut(s)	174, 237, 255, 294, 351, 411, 435
BstEII	GGTNACC	1 cut(s)	424
BstKTI	GATC	2 cut(s)	180, 396
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	2 cut(s)	177, 393
BstMWI	GCNNNNNNNGC	6 cut(s)	233, 281, 290, 414, 464, 574
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	364
BstPI	GGTNACC	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	704
BstV2I	GAAGAC	1 cut(s)	456
BsuI	GTATCC	1 cut(s)	624
BsuRI	GGCC	4 cut(s)	275, 557, 589, 646
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	3 cut(s)	408, 702, 702
Cac8I	GCNNGC	2 cut(s)	366, 579
Cfr13I	GGNCC	2 cut(s)	355, 556
CseI	GACGC	2 cut(s)	260, 685
CviAII	CATG	3 cut(s)	115, 361, 376
DdeI	CTNAG	7 cut(s)	174, 237, 255, 294, 351, 411, 435
DpnI	GATC	2 cut(s)	179, 395
DpnII	GATC	2 cut(s)	177, 393
Eam1104I	CTCTTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	490
EciI	GGCGGA	1 cut(s)	299
Eco24I	GRGCYC	2 cut(s)	238, 469
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	3 cut(s)	444, 561, 678
Eco91I	GGTNACC	1 cut(s)	424
EcoO109I	RGGNCCY	1 cut(s)	556
EcoO65I	GGTNACC	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	230
EcoT38I	GRGCYC	2 cut(s)	238, 469
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	3 cut(s)	118, 364, 379
FaiI	YATR	5 cut(s)	77, 116, 362, 377, 503
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	3 cut(s)	114, 360, 375
Fnu4HI	GCNGC	1 cut(s)	228
FriOI	GRGCYC	2 cut(s)	238, 469
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	3 cut(s)	405, 600, 681
GluI	GCNGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	4 cut(s)	275, 557, 589, 646
HapII	CCGG	1 cut(s)	617
HgaI	GACGC	2 cut(s)	260, 685
Hin1I	GRCGYC	1 cut(s)	677
Hin1II	CATG	3 cut(s)	118, 364, 379
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HindIII	AAGCTT	2 cut(s)	128, 456
HinfI	GANTC	4 cut(s)	172, 337, 473, 632
HpaII	CCGG	1 cut(s)	617
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	3 cut(s)	300, 358, 477
Hpy188I	TCNGA	5 cut(s)	177, 209, 240, 393, 712
Hpy188III	TCNNGA	3 cut(s)	169, 470, 668
Hpy8I	GTNNAC	3 cut(s)	300, 358, 477
HpyAV	CCTTC	4 cut(s)	154, 201, 503, 536
HpyCH4III	ACNGT	2 cut(s)	19, 43
HpyCH4IV	ACGT	1 cut(s)	728
HpyCH4V	TGCA	2 cut(s)	581, 707
HpyF10VI	GCNNNNNNNGC	6 cut(s)	233, 281, 290, 414, 464, 574
HpyF3I	CTNAG	7 cut(s)	174, 237, 255, 294, 351, 411, 435
HpySE526I	ACGT	1 cut(s)	728
Hsp92I	GRCGYC	1 cut(s)	677
Hsp92II	CATG	3 cut(s)	118, 364, 379
Kzo9I	GATC	2 cut(s)	177, 393
LmnI	GCTCC	3 cut(s)	39, 134, 334
LweI	GCATC	2 cut(s)	676, 716
MaeI	CTAG	3 cut(s)	405, 600, 681
MaeII	ACGT	1 cut(s)	728
MaeIII	GTNAC	4 cut(s)	13, 92, 424, 649
MalI	GATC	2 cut(s)	179, 395
MboI	GATC	2 cut(s)	177, 393
MboII	GAAGA	5 cut(s)	16, 461, 477, 684, 725
MfeI	CAATTG	1 cut(s)	267
MhlI	GDGCHC	3 cut(s)	238, 469, 704
MluCI	AATT	2 cut(s)	267, 288
MlyI	GAGTC	4 cut(s)	166, 331, 482, 626
MseI	TTAA	1 cut(s)	183
MspI	CCGG	1 cut(s)	617
MspR9I	CCNGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	6 cut(s)	233, 281, 290, 414, 464, 574
NdeII	GATC	2 cut(s)	177, 393
NlaIII	CATG	3 cut(s)	118, 364, 379
NlaIV	GGNNCC	3 cut(s)	6, 35, 136
NmuCI	GTSAC	3 cut(s)	92, 424, 649
NspI	RCATGY	1 cut(s)	364
PctI	GAATGC	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	4 cut(s)	166, 331, 481, 626
PpsI	GAGTC	4 cut(s)	166, 331, 481, 626
Psp6I	CCWGG	1 cut(s)	230
PspEI	GGTNACC	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	3 cut(s)	6, 35, 136
PspPI	GGNCC	2 cut(s)	355, 556
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	2 cut(s)	177, 393
Sau96I	GGNCC	2 cut(s)	355, 556
SchI	GAGTC	4 cut(s)	166, 331, 482, 626
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	3 cut(s)	238, 469, 704
SfaNI	GCATC	2 cut(s)	676, 716
SinI	GGWCC	1 cut(s)	355
SmlI	CTYRAG	2 cut(s)	468, 640
SmoI	CTYRAG	2 cut(s)	468, 640
Sse9I	AATT	2 cut(s)	267, 288
SsiI	CCGC	2 cut(s)	228, 284
SspMI	CTAG	3 cut(s)	405, 600, 681
StyD4I	CCNGG	1 cut(s)	230
TaaI	ACNGT	2 cut(s)	19, 43
TaiI	ACGT	1 cut(s)	731
TaqI	TCGA	3 cut(s)	109, 522, 561
TasI	AATT	2 cut(s)	267, 288
TauI	GCSGC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	3 cut(s)	415, 702, 709
TseFI	GTSAC	3 cut(s)	92, 424, 649
Tsp45I	GTSAC	3 cut(s)	92, 424, 649
TspDTI	ATGAA	2 cut(s)	364, 462
TspRI	CASTG	3 cut(s)	415, 702, 709
Van91I	CCANNNNNTGG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	355
XceI	RCATGY	1 cut(s)	364
XspI	CTAG	3 cut(s)	405, 600, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.