Rorug07G0209200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000949
Physical Location & Seq
Reverse (-)
18431492 .. 18433048
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0209200.1

Sequence Viewer

Length: 1260 bp
ATGCTTCGTCCCTCCCACACAGCACGAAAGTCTTCCTTTCCTATTTGTTTTTTGAGTCAAATCCCTGCAAATTGTTTGTATATATATAGAGCCATAGAGGCCTCTCGTTTCTTCATTCCCATTCCACTCCCAACTTTCCACTCTCGATCTCTCTTTCTTAAGAACTCATCACGTACGAAACAAAACATCTTTCGAGTCTCCGATCTCTCTCAAACAGATTTGAAATCATTCTCTTCAATGGAAACTGCTCTCAGCTCAGACATGGCTGCCCTTGATTACATCAAGAATCATCTTCTCGGAGAGTTCTCTCCGATGAGCAAAAGCTTTGCTCTTACTGAGCTAAACGCCTCCTCCTCCTCCTCCTCTTCCTCGTCCTCGGATCTATCTAGATCTCAGTCCAGTTCGTTGTCGACTTCTCAATCTTCCATAGAAATCTTTGATTACCTCGACAATGAACTCTTGGACTTCACCTCGAATAATCCAATCCCTAATGATTATTTCTTTGAGTTCGAAACCAAGCCACAAGTGATTGACCTCACAACCCCCAAACCAACTGATTTGTCCTCCCAAACTTCCTTTGAATTTGACTCCAAGCCTCAAGTTACCAACACTAGTTTCTTTGAATTCCAACAGGAGGTTCAGATCTTGAACCAAACAGCTCCCAAACCGGTCACCTCCGCCCGGAAACCGGCCCTCACCATCTCTCTCCCGAACAAGACCGAATGGATCCAGTTCTCGAAATCCGAGAAGCCTCAAGTGGTCCAGAAAACGGTTCAGAATGAGGAGAGGAAGAAGCACTACAGGGGGGTCCGACAACGGCCGTGGGGCAAGTACGCGGCGGAGATCCGAGACCCAAACCGGAGAGGCTCCCGGGTCTGGCTCGGGACCTTTGACACAGCCATCGAGGCCGCTAAGGCTTACGATAGGGCGGCGTTCAAGCTCCGAGGCTCCAAAGCCATCCTCAACTTTCCTCTCGAAGCCGGGAAATCAGATCCGCAGCCCAAGCCGGCGGCCGTGGTTGAGAAAAAACGACGTCGTGCGGTTGAAGTGAAACCGGAACCCGTGGTGGTGAAGAAGGAGAAAGTAACGGTGTCAGAGGAGGCTGTGAGTTATATTAAGGATATGCCGTTGACACCGTCGAGTTGGACGGCGGCGTATTGGGACTCCGATACGGATATGAAAGGGATCTTCAACATCCCGCCGTTGTCGCCGTTATCTCCCCACCCGGCGATGGGTTTTTCACAACTTATGGTCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

419

Amino Acids

47.14

Weight (kDa)

9.29

Isoelectric Point (pI)

56.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 266 - 317 4.3e-16 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1036
AccI GTMKAC 1 cut(s) 410
AccII CGCG 1 cut(s) 836
AclWI GGATC 6 cut(s) 387, 721, 734, 838, 986, 1193
AcoI YGGCCR 2 cut(s) 818, 1011
AcsI RAATTY 2 cut(s) 581, 623
AcyI GRCGYC 1 cut(s) 1033
AfaI GTAC 2 cut(s) 175, 833
AfiI CCNNNNNNNGG 7 cut(s) 634, 681, 688, 769, 876, 1231, 1232
AflII CTTAAG 1 cut(s) 158
AgeI ACCGGT 1 cut(s) 667
AgsI TTSAA 8 cut(s) 223, 237, 581, 623, 649, 937, 1046, 1192
AhlI ACTAGT 1 cut(s) 611
AjuI GAANNNNNNNTTGG 4 cut(s) 599, 621, 631, 653
AluBI AGCT 5 cut(s) 255, 324, 340, 659, 940
AluI AGCT 5 cut(s) 255, 324, 340, 659, 940
Alw26I GTCTC 2 cut(s) 202, 843
AlwI GGATC 6 cut(s) 387, 721, 734, 838, 986, 1193
Ama87I CYCGRG 2 cut(s) 870, 881
AoxI GGCC 5 cut(s) 99, 690, 818, 906, 1011
ApeKI GCWGC 2 cut(s) 266, 997
ApoI RAATTY 2 cut(s) 581, 623
AsiGI ACCGGT 1 cut(s) 667
Asp700I GAANNNNTTC 2 cut(s) 31, 227
AspS9I GGNCC 4 cut(s) 691, 760, 808, 885
AsuC2I CCSGG 5 cut(s) 682, 871, 872, 982, 1226
AsuHPI GGTGA 4 cut(s) 460, 664, 688, 1081
AsuII TTCGAA 1 cut(s) 510
AvaI CYCGRG 2 cut(s) 870, 881
AvaII GGWCC 3 cut(s) 760, 808, 885
BamHI GGATCC 1 cut(s) 726
BarI GAAGNNNNNNTAC 2 cut(s) 782, 814
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 253, 1009
BccI CCATC 4 cut(s) 707, 908, 965, 1225
BceAI ACGGC 7 cut(s) 805, 833, 998, 1111, 1164, 1186, 1195
BcnI CCSGG 5 cut(s) 682, 871, 872, 982, 1226
BcoDI GTCTC 2 cut(s) 202, 843
BcuI ACTAGT 1 cut(s) 611
BfaI CTAG 2 cut(s) 387, 612
BfmI CTRYAG 1 cut(s) 799
BfrI CTTAAG 1 cut(s) 158
BglI GCCNNNNNGGC 3 cut(s) 98, 905, 914
BglII AGATCT 2 cut(s) 389, 642
BisI GCNGC 7 cut(s) 267, 837, 909, 930, 998, 1011, 1152
BlsI GCNGC 7 cut(s) 268, 838, 910, 931, 999, 1012, 1153
Bme1390I CCNGG 5 cut(s) 682, 871, 872, 982, 1226
Bme18I GGWCC 3 cut(s) 760, 808, 885
BmeT110I CYCGRG 2 cut(s) 870, 881
BmgT120I GGNCC 4 cut(s) 691, 760, 808, 885
BmiI GGNNCC 6 cut(s) 728, 809, 868, 886, 949, 1059
BmrFI CCNGG 5 cut(s) 682, 871, 872, 982, 1226
BpiI GAAGAC 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 912
Bpu14I TTCGAA 1 cut(s) 510
BpuEI CTTGAG 2 cut(s) 582, 738
BpuMI CCSGG 5 cut(s) 682, 871, 872, 982, 1226
BsaAI YACGTR 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 1033
BsaI GGTCTC 1 cut(s) 843
BsaJI CCNNGG 6 cut(s) 375, 821, 870, 943, 1014, 1062
BsaWI WCCGGW 3 cut(s) 667, 858, 1054
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 7 cut(s) 634, 681, 688, 769, 876, 1231, 1232
Bse118I RCCGGY 3 cut(s) 667, 688, 1006
Bse1I ACTGG 2 cut(s) 399, 730
BseDI CCNNGG 6 cut(s) 375, 821, 870, 943, 1014, 1062
BseGI GGATG 2 cut(s) 957, 1194
BseLI CCNNNNNNNGG 7 cut(s) 634, 681, 688, 769, 876, 1231, 1232
BseMII CTCAG 4 cut(s) 265, 270, 327, 407
BseNI ACTGG 2 cut(s) 399, 730
BseRI GAGGAG 7 cut(s) 340, 343, 346, 349, 352, 797, 1112
BseX3I CGGCCG 2 cut(s) 818, 1011
BseXI GCAGC 2 cut(s) 253, 1009
Bsh1236I CGCG 1 cut(s) 836
Bsh1285I CGRYCG 2 cut(s) 821, 1014
BshFI GGCC 5 cut(s) 101, 692, 820, 908, 1013
BshTI ACCGGT 1 cut(s) 667
BsiEI CGRYCG 2 cut(s) 821, 1014
BsiHKCI CYCGRG 2 cut(s) 870, 881
BsiSI CCGG 9 cut(s) 668, 682, 689, 859, 871, 981, 1007, 1055, 1226
BsiWI CGTACG 1 cut(s) 173
BslFI GGGAC 2 cut(s) 898, 1175
BslI CCNNNNNNNGG 7 cut(s) 634, 681, 688, 769, 876, 1231, 1232
BsmAI GTCTC 2 cut(s) 202, 843
BsmFI GGGAC 2 cut(s) 898, 1175
BsnI GGCC 5 cut(s) 101, 692, 820, 908, 1013
Bso31I GGTCTC 1 cut(s) 843
BsoBI CYCGRG 2 cut(s) 870, 881
Bsp119I TTCGAA 1 cut(s) 510
Bsp143I GATC 9 cut(s) 146, 202, 379, 389, 642, 726, 843, 991, 1185
BspANI GGCC 5 cut(s) 101, 692, 820, 908, 1013
BspCNI CTCAG 4 cut(s) 264, 269, 328, 406
BspFNI CGCG 1 cut(s) 836
BspLI GGNNCC 6 cut(s) 728, 809, 868, 886, 949, 1059
BspPI GGATC 6 cut(s) 387, 721, 734, 838, 986, 1193
BspT104I TTCGAA 1 cut(s) 510
BspTI CTTAAG 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 843
BsrFI RCCGGY 3 cut(s) 667, 688, 1006
BsrI ACTGG 2 cut(s) 399, 730
BssAI RCCGGY 3 cut(s) 667, 688, 1006
BssECI CCNNGG 6 cut(s) 375, 821, 870, 943, 1014, 1062
BssMI GATC 9 cut(s) 146, 202, 379, 389, 642, 726, 843, 991, 1185
BssNI GRCGYC 1 cut(s) 1033
Bst4CI ACNGT 3 cut(s) 772, 1090, 1137
Bst6I CTCTTC 2 cut(s) 238, 370
BstACI GRCGYC 1 cut(s) 1033
BstAFI CTTAAG 1 cut(s) 158
BstBAI YACGTR 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 510
BstC8I GCNNGC 1 cut(s) 1008
BstDEI CTNAG 5 cut(s) 251, 256, 336, 393, 912
BstDSI CCRYGG 3 cut(s) 821, 1014, 1062
BstEII GGTNACC 1 cut(s) 670
BstF5I GGATG 2 cut(s) 957, 1194
BstFNI CGCG 1 cut(s) 836
BstKTI GATC 9 cut(s) 149, 205, 382, 392, 645, 729, 846, 994, 1188
BstMAI GTCTC 2 cut(s) 202, 843
BstMBI GATC 9 cut(s) 146, 202, 379, 389, 642, 726, 843, 991, 1185
BstMCI CGRYCG 2 cut(s) 821, 1014
BstMWI GCNNNNNNNGC 5 cut(s) 98, 905, 914, 1003, 1207
BstPI GGTNACC 1 cut(s) 670
BstSCI CCNGG 5 cut(s) 680, 869, 870, 980, 1224
BstSFI CTRYAG 1 cut(s) 799
BstUI CGCG 1 cut(s) 836
BstV1I GCAGC 2 cut(s) 253, 1009
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 7 cut(s) 379, 389, 642, 726, 843, 991, 1185
BstYI RGATCY 7 cut(s) 379, 389, 642, 726, 843, 991, 1185
BstZI CGGCCG 2 cut(s) 818, 1011
BsuRI GGCC 5 cut(s) 101, 692, 820, 908, 1013
BtgI CCRYGG 3 cut(s) 821, 1014, 1062
BtgZI GCGATG 1 cut(s) 1244
BtsCI GGATG 2 cut(s) 957, 1194
Cac8I GCNNGC 1 cut(s) 1008
Cfr10I RCCGGY 3 cut(s) 667, 688, 1006
Cfr13I GGNCC 4 cut(s) 691, 760, 808, 885
Cfr9I CCCGGG 1 cut(s) 870
Csp6I GTAC 2 cut(s) 174, 832
CspAI ACCGGT 1 cut(s) 667
CspCI CAANNNNNGTGG 2 cut(s) 803, 838
CviAII CATG 1 cut(s) 262
CviQI GTAC 2 cut(s) 174, 832
DdeI CTNAG 5 cut(s) 251, 256, 336, 393, 912
DpnI GATC 9 cut(s) 148, 204, 381, 391, 644, 728, 845, 993, 1187
DpnII GATC 9 cut(s) 146, 202, 379, 389, 642, 726, 843, 991, 1185
EaeI YGGCCR 2 cut(s) 818, 1011
EagI CGGCCG 2 cut(s) 818, 1011
Eam1104I CTCTTC 2 cut(s) 238, 370
EarI CTCTTC 2 cut(s) 238, 370
EciI GGCGGA 2 cut(s) 667, 854
EclXI CGGCCG 2 cut(s) 818, 1011
Eco147I AGGCCT 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 843
Eco47I GGWCC 3 cut(s) 760, 808, 885
Eco52I CGGCCG 2 cut(s) 818, 1011
Eco88I CYCGRG 2 cut(s) 870, 881
Eco91I GGTNACC 1 cut(s) 670
EcoO109I RGGNCCY 1 cut(s) 885
EcoO65I GGTNACC 1 cut(s) 670
EcoRI GAATTC 1 cut(s) 623
FaeI CATG 1 cut(s) 265
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 2 cut(s) 898, 1175
FatI CATG 1 cut(s) 261
FauI CCCGC 1 cut(s) 1206
FblI GTMKAC 1 cut(s) 410
Fnu4HI GCNGC 7 cut(s) 267, 837, 909, 930, 998, 1011, 1152
FokI GGATG 2 cut(s) 944, 1181
Fsp4HI GCNGC 7 cut(s) 267, 837, 909, 930, 998, 1011, 1152
FspBI CTAG 2 cut(s) 387, 612
GluI GCNGC 7 cut(s) 267, 837, 909, 930, 998, 1011, 1152
HaeIII GGCC 5 cut(s) 101, 692, 820, 908, 1013
HapII CCGG 9 cut(s) 668, 682, 689, 859, 871, 981, 1007, 1055, 1226
Hin1I GRCGYC 1 cut(s) 1033
Hin1II CATG 1 cut(s) 265
HincII GTYRAC 2 cut(s) 411, 1131
HindII GTYRAC 2 cut(s) 411, 1131
HindIII AAGCTT 1 cut(s) 322
HinfI GANTC 5 cut(s) 55, 195, 286, 587, 1163
HpaII CCGG 9 cut(s) 668, 682, 689, 859, 871, 981, 1007, 1055, 1226
HphI GGTGA 4 cut(s) 460, 664, 688, 1081
Hpy166II GTNNAC 2 cut(s) 411, 1131
Hpy188III TCNNGA 9 cut(s) 144, 283, 387, 646, 709, 736, 763, 883, 974
Hpy8I GTNNAC 2 cut(s) 411, 1131
Hpy99I CGWCG 3 cut(s) 1035, 1038, 1141
HpyAV CCTTC 1 cut(s) 1069
HpyCH4III ACNGT 3 cut(s) 772, 1090, 1137
HpyCH4IV ACGT 2 cut(s) 172, 1033
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 905, 914, 1003, 1207
HpyF3I CTNAG 5 cut(s) 251, 256, 336, 393, 912
HpySE526I ACGT 2 cut(s) 172, 1033
Hsp92I GRCGYC 1 cut(s) 1033
Hsp92II CATG 1 cut(s) 265
KroI GCCGGC 1 cut(s) 1006
KroNI GCCGGC 1 cut(s) 1008
Kzo9I GATC 9 cut(s) 146, 202, 379, 389, 642, 726, 843, 991, 1185
LmnI GCTCC 4 cut(s) 664, 872, 945, 953
Lsp1109I GCAGC 2 cut(s) 253, 1009
MaeI CTAG 2 cut(s) 387, 612
MaeII ACGT 2 cut(s) 172, 1033
MaeIII GTNAC 3 cut(s) 601, 670, 1084
MalI GATC 9 cut(s) 148, 204, 381, 391, 644, 728, 845, 993, 1187
MboI GATC 9 cut(s) 146, 202, 379, 389, 642, 726, 843, 991, 1185
MboII GAAGA 9 cut(s) 24, 103, 225, 284, 357, 414, 802, 1084, 1180
MflI RGATCY 7 cut(s) 379, 389, 642, 726, 843, 991, 1185
MluCI AATT 3 cut(s) 70, 581, 623
MlyI GAGTC 4 cut(s) 64, 204, 581, 1157
MmeI TCCRAC 3 cut(s) 652, 835, 1124
MroNI GCCGGC 1 cut(s) 1006
MroXI GAANNNNTTC 2 cut(s) 31, 227
MseI TTAA 2 cut(s) 159, 1116
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 9 cut(s) 668, 682, 689, 859, 871, 981, 1007, 1055, 1226
MspR9I CCNGG 5 cut(s) 682, 871, 872, 982, 1226
MvnI CGCG 1 cut(s) 836
MwoI GCNNNNNNNGC 5 cut(s) 98, 905, 914, 1003, 1207
NaeI GCCGGC 1 cut(s) 1008
NciI CCSGG 5 cut(s) 682, 871, 872, 982, 1226
NdeII GATC 9 cut(s) 146, 202, 379, 389, 642, 726, 843, 991, 1185
NgoMIV GCCGGC 1 cut(s) 1006
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 6 cut(s) 728, 809, 868, 886, 949, 1059
NmuCI GTSAC 1 cut(s) 670
NspV TTCGAA 1 cut(s) 510
PceI AGGCCT 1 cut(s) 101
PdiI GCCGGC 1 cut(s) 1008
PdmI GAANNNNTTC 2 cut(s) 31, 227
PfeI GAWTC 1 cut(s) 286
Pfl23II CGTACG 1 cut(s) 173
PflFI GACNNNGTC 1 cut(s) 1135
PinAI ACCGGT 1 cut(s) 667
PkrI GCNGC 7 cut(s) 268, 838, 910, 931, 999, 1012, 1153
PleI GAGTC 4 cut(s) 63, 203, 581, 1157
PpsI GAGTC 4 cut(s) 63, 203, 581, 1157
Ppu21I YACGTR 1 cut(s) 173
PpuMI RGGWCCY 1 cut(s) 885
Psp5II RGGWCCY 1 cut(s) 885
PspEI GGTNACC 1 cut(s) 670
PspLI CGTACG 1 cut(s) 173
PspN4I GGNNCC 6 cut(s) 728, 809, 868, 886, 949, 1059
PspPI GGNCC 4 cut(s) 691, 760, 808, 885
PspPPI RGGWCCY 1 cut(s) 885
PsuI RGATCY 7 cut(s) 379, 389, 642, 726, 843, 991, 1185
PsyI GACNNNGTC 1 cut(s) 1135
RsaI GTAC 2 cut(s) 175, 833
RsaNI GTAC 2 cut(s) 174, 832
SalI GTCGAC 1 cut(s) 409
SaqAI TTAA 2 cut(s) 159, 1116
SatI GCNGC 7 cut(s) 267, 837, 909, 930, 998, 1011, 1152
Sau3AI GATC 9 cut(s) 146, 202, 379, 389, 642, 726, 843, 991, 1185
Sau96I GGNCC 4 cut(s) 691, 760, 808, 885
SchI GAGTC 4 cut(s) 64, 204, 581, 1157
ScrFI CCNGG 5 cut(s) 682, 871, 872, 982, 1226
SfcI CTRYAG 1 cut(s) 799
SfuI TTCGAA 1 cut(s) 510
SinI GGWCC 3 cut(s) 760, 808, 885
SmaI CCCGGG 1 cut(s) 872
SmlI CTYRAG 3 cut(s) 158, 597, 753
SmoI CTYRAG 3 cut(s) 158, 597, 753
SpeI ACTAGT 1 cut(s) 611
Sse9I AATT 3 cut(s) 70, 581, 623
SseBI AGGCCT 1 cut(s) 101
SspMI CTAG 2 cut(s) 387, 612
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 5 cut(s) 680, 869, 870, 980, 1224
TaaI ACNGT 3 cut(s) 772, 1090, 1137
TaiI ACGT 2 cut(s) 175, 1036
TaqII GACCGA 1 cut(s) 734
TasI AATT 3 cut(s) 70, 581, 623
TauI GCSGC 5 cut(s) 839, 911, 932, 1013, 1154
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 2 cut(s) 159, 1116
Tru9I TTAA 2 cut(s) 159, 1116
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 2 cut(s) 266, 997
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 3 cut(s) 103, 468, 1193
TspGWI ACGGA 1 cut(s) 1187
TspMI CCCGGG 1 cut(s) 870
Tth111I GACNNNGTC 1 cut(s) 1135
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 3 cut(s) 760, 808, 885
XapI RAATTY 2 cut(s) 581, 623
XbaI TCTAGA 1 cut(s) 386
XmaI CCCGGG 1 cut(s) 870
XmiI GTMKAC 1 cut(s) 410
XmnI GAANNNNTTC 2 cut(s) 31, 227
XspI CTAG 2 cut(s) 387, 612
ZraI GACGTC 1 cut(s) 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.