RchiOBHm_Chr4g0421521

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000949
Physical Location & Seq
Reverse (-)
47157483 .. 47161048
3566 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39117

Sequence Viewer

Length: 183 bp
ATGTTGTGGAGGCATCTTGGCAAGGGCGGGAACGTGGCTTCCCGGCGACGGATTTGCCTCTTCCGGATACCGTGGCGTAGCTTGAACATAGGGCTACACGATGGATGTCACGGTTGGGCCTTGCCATGTCTCGTGGATGTCCCAAAGTGGGTGTTACTTATGCTTGGTGATGTAGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.88

Weight (kDa)

9.61

Isoelectric Point (pI)

61.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 63
AciI CCGC 1 cut(s) 27
AfiI CCNNNNNNNGG 2 cut(s) 48, 148
AgsI TTSAA 1 cut(s) 85
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
AluBI AGCT 1 cut(s) 81
AluI AGCT 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 134
Aor13HI TCCGGA 1 cut(s) 63
AoxI GGCC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 117
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 179
BauI CACGAG 1 cut(s) 131
BccI CCATC 1 cut(s) 95
BcgI CGANNNNNNTGC 2 cut(s) 36, 70
BciVI GTATCC 1 cut(s) 60
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 181
BfuI GTATCC 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 22
BpuMI CCSGG 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 63
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 148
BseAI TCCGGA 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 2 cut(s) 110, 142
BseLI CCNNNNNNNGG 2 cut(s) 48, 148
BshFI GGCC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 43, 64
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 48, 148
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 1 cut(s) 119
Bsp13I TCCGGA 1 cut(s) 63
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 119
BspEI TCCGGA 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 71
BssSI CACGAG 1 cut(s) 131
Bst2BI CACGAG 1 cut(s) 131
Bst4CI ACNGT 2 cut(s) 72, 113
Bst6I CTCTTC 1 cut(s) 65
BstDSI CCRYGG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 110, 142
BstMAI GTCTC 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 41
BsuI GTATCC 1 cut(s) 60
BsuRI GGCC 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 71
BtsCI GGATG 2 cut(s) 110, 142
Cfr13I GGNCC 1 cut(s) 117
CviAII CATG 1 cut(s) 126
CviJI RGCY 4 cut(s) 38, 81, 94, 119
CviKI_1 RGCY 4 cut(s) 38, 81, 94, 119
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
FaeI CATG 1 cut(s) 129
FaiI YATR 3 cut(s) 89, 127, 161
FaqI GGGAC 1 cut(s) 125
FatI CATG 1 cut(s) 125
FauI CCCGC 1 cut(s) 20
FokI GGATG 2 cut(s) 117, 149
FspBI CTAG 1 cut(s) 181
HaeIII GGCC 1 cut(s) 119
HapII CCGG 2 cut(s) 43, 64
Hin1II CATG 1 cut(s) 129
HpaII CCGG 2 cut(s) 43, 64
HphI GGTGA 1 cut(s) 179
Hpy188III TCNNGA 1 cut(s) 64
Hpy99I CGWCG 1 cut(s) 51
HpyCH4III ACNGT 2 cut(s) 72, 113
HpyCH4IV ACGT 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 1 cut(s) 129
Kpn2I TCCGGA 1 cut(s) 63
LpnPI CCDG 2 cut(s) 56, 77
LweI GCATC 1 cut(s) 22
MaeI CTAG 1 cut(s) 181
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 2 cut(s) 107, 153
MboII GAAGA 1 cut(s) 52
MnlI CCTC 2 cut(s) 3, 68
MroI TCCGGA 1 cut(s) 63
MspI CCGG 2 cut(s) 43, 64
MspR9I CCNGG 1 cut(s) 43
NciI CCSGG 1 cut(s) 43
NlaIII CATG 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 107
PspPI GGNCC 1 cut(s) 117
Sau96I GGNCC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 43
SetI ASST 2 cut(s) 36, 83
SfaNI GCATC 1 cut(s) 22
SsiI CCGC 1 cut(s) 27
SspMI CTAG 1 cut(s) 181
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 72, 113
TaiI ACGT 1 cut(s) 36
TseFI GTSAC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 107
TspGWI ACGGA 1 cut(s) 64
XspI CTAG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.