Rmu_sc0000455.1_g000055

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000455.1
OG0000949
Physical Location & Seq
Forward (+)
199946 .. 203997
4052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000455.1_g000055.1.cds

Sequence Viewer

Length: 1605 bp
atgttatgggggcatcttggcaagggcggaaaggtggcttcccggtggcggatttgcgacttccggataccgccgcgtagcctgaacatagggctacacgatgcatgtctcggttgggcctcaccatgtctcgtggatgtcccaaagtcaaaacatcgacccaaagcaatagctgaaggggtaatcaaggccctcgatgcaccatcaaggcgtgcagggagaccaaagggggctagaaacaaagagtatccggttttcaaagatgactcttactcagggccagtcactcgcaacaaggctcacaaaatgacgcctagagatgcttcttcagtgggcactgcatcagaagatgagggacaaacgtggaaagataatccactctatgagacatctgtaaaagaaagagtctcccagctgcaaactgacggctcctcacagggttcagaaagcagtgaaagccagaacccgatggcgcacaagtgctggcaagaggaagaggccaagaggcttgctgaaatagaagcagcagcagccaaaaaattggaagagaaagaggctgaagtagctgcattggtagcacaactagccttaatggccaataacaaggaaaggggcaaagagatgttccaatacacagaacagaagcatgaggaacgtggagattcttcaggcggctcaaacacattctcccccgctgacatcaagacaatgatagccgaggggattaaggaatttcagttatcactgaatccgcctgtaattgggtacaggaagccataccctctccattatgacgccatacctttccccaaagggtatcagaggcccactttcgataagtttgatgggataaatggctctcctcaagaacatttggcccacttccactcagcttgcggagagacttctcaactggatgcctttttggttaggcaatttgttcagtccctcaaagggtccacattcacatgccggattccggtcaccggccgccggattccggtcaccggccgccggattccggccaacttcgccggattccggttgtggtccagcgccgaagctcgccggaacctgatcagaaaattgattgtatgtgctgaaggtgagtcaggttggcgatgctcctctggatctcgccggagagagaggactggaaacaaactcgccagcggtggtgttgggcctgaaaatggagcaggactcggcctcagaaatgaggtggccgttaatggctttgaggcgatgctgagggactggaaacgaactagaaacggcaaaggccagatcgccgtcgtggagggggggagagagagtacggaggagagagagaagggagacggcggcgttgtgaccagtctctctctctatatcgacgctggcgacctgctgcatctcctcccttcgcctgaatctacatcgccaccttcttcggcgagctacttcagaggtccgacgatagagataggctcggattccagatcattgtcggtgcagtctctctcgcaatgccgccttctcctccggcaaggatttccagataactgcgacttcttcgtcgaattcgccctcattctcaagccacactatcggatcgaggtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

534

Amino Acids

58.83

Weight (kDa)

9.07

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1556
Acc36I ACCTGC 1 cut(s) 1395
AccII CGCG 1 cut(s) 76
AccIII TCCGGA 1 cut(s) 63
AclWI GGATC 2 cut(s) 1141, 1601
AcoI YGGCCR 5 cut(s) 594, 988, 1009, 1023, 1224
AcsI RAATTY 2 cut(s) 731, 1562
AcuI CTGAAG 6 cut(s) 195, 312, 579, 651, 1122, 1429
AcyI GRCGYC 2 cut(s) 311, 795
AfaI GTAC 2 cut(s) 767, 1318
AgsI TTSAA 1 cut(s) 259
AluBI AGCT 6 cut(s) 173, 415, 566, 893, 1064, 1440
AluI AGCT 6 cut(s) 173, 415, 566, 893, 1064, 1440
Alw26I GTCTC 9 cut(s) 113, 134, 214, 380, 412, 896, 1332, 1364, 1503
AlwI GGATC 2 cut(s) 1141, 1601
Aor13HI TCCGGA 1 cut(s) 63
ApeKI GCWGC 6 cut(s) 415, 524, 527, 530, 566, 1390
ApoI RAATTY 2 cut(s) 731, 1562
AspLEI GCGC 2 cut(s) 475, 1058
AspS9I GGNCC 9 cut(s) 117, 190, 278, 825, 877, 957, 1050, 1184, 1451
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 4 cut(s) 114, 976, 997, 1118
AvaII GGWCC 3 cut(s) 957, 1050, 1451
BaeGI GKGCMC 1 cut(s) 338
BalI TGGCCA 1 cut(s) 596
BauI CACGAG 1 cut(s) 131
BbvCI CCTCAGC 1 cut(s) 1250
BbvI GCAGC 6 cut(s) 402, 536, 539, 542, 553, 1377
BccI CCATC 3 cut(s) 211, 463, 839
BceAI ACGGC 5 cut(s) 442, 1211, 1277, 1291, 1357
BciVI GTATCC 2 cut(s) 60, 258
BclI TGATCA 1 cut(s) 1077
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 9 cut(s) 113, 134, 214, 380, 412, 896, 1332, 1364, 1503
BfaI CTAG 4 cut(s) 234, 315, 584, 1269
BfoI RGCGCY 1 cut(s) 1059
BfuAI ACCTGC 1 cut(s) 1395
BfuI GTATCC 2 cut(s) 60, 258
BglI GCCNNNNNGGC 1 cut(s) 593
Bme1390I CCNGG 1 cut(s) 43
Bme18I GGWCC 3 cut(s) 957, 1050, 1451
BmgT120I GGNCC 9 cut(s) 117, 190, 278, 825, 877, 957, 1050, 1184, 1451
BmiI GGNNCC 3 cut(s) 430, 958, 1073
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 9 cut(s) 22, 91, 187, 310, 350, 907, 1112, 1236, 1402
BplI GAGNNNNNCTC 4 cut(s) 1188, 1220, 1454, 1486
Bpu10I CCTNAGC 1 cut(s) 1250
BpuEI CTTGAG 2 cut(s) 849, 1562
BpuMI CCSGG 1 cut(s) 43
BsaHI GRCGYC 2 cut(s) 311, 795
BsaI GGTCTC 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 717
BsaWI WCCGGW 5 cut(s) 63, 250, 979, 1000, 1041
BsaXI ACNNNNNCTCC 4 cut(s) 671, 701, 1300, 1330
Bse118I RCCGGY 2 cut(s) 986, 1007
Bse1I ACTGG 5 cut(s) 281, 918, 1159, 1262, 1356
Bse3DI GCAATG 1 cut(s) 1514
BseAI TCCGGA 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 717
BseGI GGATG 2 cut(s) 142, 922
BseMI GCAATG 1 cut(s) 1514
BseMII CTCAG 4 cut(s) 288, 903, 1225, 1241
BseNI ACTGG 5 cut(s) 281, 918, 1159, 1262, 1356
BseRI GAGGAG 6 cut(s) 421, 852, 1117, 1337, 1388, 1511
BseSI GKGCMC 1 cut(s) 338
BseX3I CGGCCG 2 cut(s) 988, 1009
BseXI GCAGC 6 cut(s) 402, 536, 539, 542, 553, 1377
BseYI CCCAGC 1 cut(s) 411
BsgI GTGCAG 2 cut(s) 234, 1514
Bsh1236I CGCG 1 cut(s) 76
Bsh1285I CGRYCG 2 cut(s) 991, 1012
BsiEI CGRYCG 2 cut(s) 991, 1012
BslFI GGGAC 4 cut(s) 125, 369, 931, 1268
BsmAI GTCTC 9 cut(s) 113, 134, 214, 380, 412, 896, 1332, 1364, 1503
BsmBI CGTCTC 1 cut(s) 1332
BsmFI GGGAC 4 cut(s) 125, 369, 931, 1268
Bso31I GGTCTC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 338
Bsp13I TCCGGA 1 cut(s) 63
Bsp143I GATC 5 cut(s) 1077, 1133, 1287, 1481, 1593
BspCNI CTCAG 4 cut(s) 287, 902, 1224, 1242
BspEI TCCGGA 1 cut(s) 63
BspFNI CGCG 1 cut(s) 76
BspLI GGNNCC 3 cut(s) 430, 958, 1073
BspMI ACCTGC 1 cut(s) 1395
BspPI GGATC 2 cut(s) 1141, 1601
BspTNI GGTCTC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 1514
BsrFI RCCGGY 2 cut(s) 986, 1007
BsrI ACTGG 5 cut(s) 281, 918, 1159, 1262, 1356
BssAI RCCGGY 2 cut(s) 986, 1007
BssECI CCNNGG 1 cut(s) 717
BssMI GATC 5 cut(s) 1077, 1133, 1287, 1481, 1593
BssNI GRCGYC 2 cut(s) 311, 795
BssSI CACGAG 1 cut(s) 131
Bst2BI CACGAG 1 cut(s) 131
Bst6I CTCTTC 2 cut(s) 489, 540
BstACI GRCGYC 2 cut(s) 311, 795
BstC8I GCNNGC 8 cut(s) 213, 485, 510, 895, 1066, 1171, 1381, 1438
BstDEI CTNAG 4 cut(s) 274, 889, 1211, 1250
BstEII GGTNACC 2 cut(s) 982, 1003
BstF5I GGATG 2 cut(s) 142, 922
BstFNI CGCG 1 cut(s) 76
BstH2I RGCGCY 1 cut(s) 1059
BstHHI GCGC 2 cut(s) 475, 1058
BstKTI GATC 5 cut(s) 1080, 1136, 1290, 1484, 1596
BstMAI GTCTC 9 cut(s) 113, 134, 214, 380, 412, 896, 1332, 1364, 1503
BstMBI GATC 5 cut(s) 1077, 1133, 1287, 1481, 1593
BstMCI CGRYCG 2 cut(s) 991, 1012
BstMWI GCNNNNNNNGC 8 cut(s) 197, 456, 530, 563, 575, 584, 593, 1031
BstNSI RCATGY 2 cut(s) 108, 972
BstPI GGTNACC 2 cut(s) 982, 1003
BstSCI CCNGG 1 cut(s) 41
BstSLI GKGCMC 1 cut(s) 338
BstUI CGCG 1 cut(s) 76
BstV1I GCAGC 6 cut(s) 402, 536, 539, 542, 553, 1377
BstX2I RGATCY 1 cut(s) 1133
BstXI CCANNNNNNTGG 1 cut(s) 541
BstYI RGATCY 1 cut(s) 1133
BstZI CGGCCG 2 cut(s) 988, 1009
BsuI GTATCC 2 cut(s) 60, 258
BtgZI GCGATG 3 cut(s) 1135, 1259, 1404
BtsCI GGATG 2 cut(s) 142, 922
BtsI GCAGTG 2 cut(s) 336, 457
BtsIMutI CAGTG 4 cut(s) 336, 336, 457, 743
BveI ACCTGC 1 cut(s) 1395
Cac8I GCNNGC 8 cut(s) 213, 485, 510, 895, 1066, 1171, 1381, 1438
CfoI GCGC 2 cut(s) 475, 1058
Cfr10I RCCGGY 2 cut(s) 986, 1007
Cfr13I GGNCC 9 cut(s) 117, 190, 278, 825, 877, 957, 1050, 1184, 1451
CseI GACGC 3 cut(s) 319, 803, 1385
Csp6I GTAC 2 cut(s) 766, 1317
CspCI CAANNNNNGTGG 2 cut(s) 875, 910
CviAII CATG 4 cut(s) 105, 126, 647, 969
CviQI GTAC 2 cut(s) 766, 1317
DdeI CTNAG 4 cut(s) 274, 889, 1211, 1250
DpnI GATC 5 cut(s) 1079, 1135, 1289, 1483, 1595
DpnII GATC 5 cut(s) 1077, 1133, 1287, 1481, 1593
DrdI GACNNNNNNGTC 1 cut(s) 1556
DseDI GACNNNNNNGTC 1 cut(s) 1556
EaeI YGGCCR 5 cut(s) 594, 988, 1009, 1023, 1224
EagI CGGCCG 2 cut(s) 988, 1009
Eam1104I CTCTTC 2 cut(s) 489, 540
EarI CTCTTC 2 cut(s) 489, 540
EciI GGCGGA 3 cut(s) 42, 64, 741
EclXI CGGCCG 2 cut(s) 988, 1009
Eco31I GGTCTC 1 cut(s) 214
Eco47I GGWCC 3 cut(s) 957, 1050, 1451
Eco52I CGGCCG 2 cut(s) 988, 1009
Eco57I CTGAAG 6 cut(s) 195, 312, 579, 651, 1122, 1429
Eco91I GGTNACC 2 cut(s) 982, 1003
EcoO109I RGGNCCY 1 cut(s) 190
EcoO65I GGTNACC 2 cut(s) 982, 1003
EcoRI GAATTC 1 cut(s) 1562
EcoT22I ATGCAT 1 cut(s) 106
Esp3I CGTCTC 1 cut(s) 1332
FaeI CATG 4 cut(s) 108, 129, 650, 972
FaqI GGGAC 4 cut(s) 125, 369, 931, 1268
FatI CATG 4 cut(s) 104, 125, 646, 968
FauI CCCGC 1 cut(s) 700
FbaI TGATCA 1 cut(s) 1077
FokI GGATG 2 cut(s) 149, 929
FspBI CTAG 4 cut(s) 234, 315, 584, 1269
GlaI GCGC 2 cut(s) 474, 1057
GsaI CCCAGC 1 cut(s) 415
HaeII RGCGCY 1 cut(s) 1059
HgaI GACGC 3 cut(s) 319, 803, 1385
HhaI GCGC 2 cut(s) 475, 1058
Hin1I GRCGYC 2 cut(s) 311, 795
Hin1II CATG 4 cut(s) 108, 129, 650, 972
Hin6I GCGC 2 cut(s) 473, 1056
HinP1I GCGC 2 cut(s) 473, 1056
HphI GGTGA 4 cut(s) 114, 976, 997, 1118
Hpy166II GTNNAC 1 cut(s) 960
Hpy188III TCNNGA 6 cut(s) 64, 703, 866, 1131, 1479, 1538
Hpy8I GTNNAC 1 cut(s) 960
Hpy99I CGWCG 4 cut(s) 1298, 1379, 1459, 1562
HpyAV CCTTC 6 cut(s) 170, 1097, 1327, 1413, 1437, 1526
HpyCH4IV ACGT 2 cut(s) 362, 655
HpyCH4V TGCA 8 cut(s) 104, 200, 215, 341, 418, 569, 1393, 1495
HpyF10VI GCNNNNNNNGC 8 cut(s) 197, 456, 530, 563, 575, 584, 593, 1031
HpyF3I CTNAG 4 cut(s) 274, 889, 1211, 1250
HpySE526I ACGT 2 cut(s) 362, 655
Hsp92I GRCGYC 2 cut(s) 311, 795
Hsp92II CATG 4 cut(s) 108, 129, 650, 972
HspAI GCGC 2 cut(s) 473, 1056
Kpn2I TCCGGA 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 1077
Kzo9I GATC 5 cut(s) 1077, 1133, 1287, 1481, 1593
LmnI GCTCC 3 cut(s) 434, 1130, 1196
Lsp1109I GCAGC 6 cut(s) 402, 536, 539, 542, 553, 1377
LweI GCATC 9 cut(s) 22, 91, 187, 310, 350, 907, 1112, 1236, 1402
MaeI CTAG 4 cut(s) 234, 315, 584, 1269
MaeII ACGT 2 cut(s) 362, 655
MaeIII GTNAC 4 cut(s) 283, 982, 1003, 1351
MalI GATC 5 cut(s) 1079, 1135, 1289, 1483, 1595
MboI GATC 5 cut(s) 1077, 1133, 1287, 1481, 1593
MboII GAAGA 7 cut(s) 318, 359, 506, 557, 657, 1422, 1546
MflI RGATCY 1 cut(s) 1133
MhlI GDGCHC 1 cut(s) 338
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 6 cut(s) 539, 731, 759, 935, 1085, 1562
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 4 cut(s) 260, 414, 1118, 1197
MmeI TCCRAC 1 cut(s) 1478
Mox20I TGGCCA 1 cut(s) 596
Mph1103I ATGCAT 1 cut(s) 106
MroI TCCGGA 1 cut(s) 63
MscI TGGCCA 1 cut(s) 596
MseI TTAA 3 cut(s) 590, 726, 1230
MslI CAYNNNNRTG 1 cut(s) 967
Msp20I TGGCCA 1 cut(s) 596
MspA1I CMGCKG 3 cut(s) 415, 695, 1173
MspR9I CCNGG 1 cut(s) 43
MvnI CGCG 1 cut(s) 76
MwoI GCNNNNNNNGC 8 cut(s) 197, 456, 530, 563, 575, 584, 593, 1031
NciI CCSGG 1 cut(s) 43
NdeII GATC 5 cut(s) 1077, 1133, 1287, 1481, 1593
NlaIII CATG 4 cut(s) 108, 129, 650, 972
NlaIV GGNNCC 3 cut(s) 430, 958, 1073
NmeAIII GCCGAG 2 cut(s) 742, 1185
NmuCI GTSAC 4 cut(s) 283, 982, 1003, 1351
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 2 cut(s) 108, 972
PcsI WCGNNNNNNNCGW 1 cut(s) 1380
PfeI GAWTC 8 cut(s) 662, 748, 976, 997, 1018, 1038, 1412, 1475
PleI GAGTC 4 cut(s) 260, 413, 1117, 1197
PpsI GAGTC 4 cut(s) 260, 413, 1117, 1197
PspEI GGTNACC 2 cut(s) 982, 1003
PspFI CCCAGC 1 cut(s) 411
PspN4I GGNNCC 3 cut(s) 430, 958, 1073
PspPI GGNCC 9 cut(s) 117, 190, 278, 825, 877, 957, 1050, 1184, 1451
PsuI RGATCY 1 cut(s) 1133
PvuII CAGCTG 1 cut(s) 415
RsaI GTAC 2 cut(s) 767, 1318
RsaNI GTAC 2 cut(s) 766, 1317
RseI CAYNNNNRTG 1 cut(s) 967
SaqAI TTAA 3 cut(s) 590, 726, 1230
Sau3AI GATC 5 cut(s) 1077, 1133, 1287, 1481, 1593
Sau96I GGNCC 9 cut(s) 117, 190, 278, 825, 877, 957, 1050, 1184, 1451
SchI GAGTC 4 cut(s) 260, 414, 1118, 1197
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 1 cut(s) 338
SfaNI GCATC 9 cut(s) 22, 91, 187, 310, 350, 907, 1112, 1236, 1402
SinI GGWCC 3 cut(s) 957, 1050, 1451
SmiMI CAYNNNNRTG 1 cut(s) 967
SmlI CTYRAG 2 cut(s) 864, 1577
SmoI CTYRAG 2 cut(s) 864, 1577
Sse9I AATT 6 cut(s) 539, 731, 759, 935, 1085, 1562
SspMI CTAG 4 cut(s) 234, 315, 584, 1269
StyD4I CCNGG 1 cut(s) 41
TaiI ACGT 2 cut(s) 365, 658
TaqI TCGA 6 cut(s) 157, 195, 834, 1374, 1560, 1596
TasI AATT 6 cut(s) 539, 731, 759, 935, 1085, 1562
TauI GCSGC 6 cut(s) 76, 675, 993, 1014, 1347, 1515
TfiI GAWTC 8 cut(s) 662, 748, 976, 997, 1018, 1038, 1412, 1475
Tru1I TTAA 3 cut(s) 590, 726, 1230
Tru9I TTAA 3 cut(s) 590, 726, 1230
TscAI CASTG 4 cut(s) 336, 343, 457, 750
TseFI GTSAC 4 cut(s) 283, 982, 1003, 1351
TseI GCWGC 6 cut(s) 415, 524, 527, 530, 566, 1390
Tsp45I GTSAC 4 cut(s) 283, 982, 1003, 1351
TspGWI ACGGA 1 cut(s) 1334
TspRI CASTG 4 cut(s) 336, 343, 457, 750
VpaK11BI GGWCC 3 cut(s) 957, 1050, 1451
XapI RAATTY 2 cut(s) 731, 1562
XceI RCATGY 2 cut(s) 108, 972
XspI CTAG 4 cut(s) 234, 315, 584, 1269
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.