Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005465.1

Orthogroup ID

OG0000949

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 390

Gene Structure 389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005465.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 389 bp

atgtctacagatgctttttcagtgggtaccgcatcagaagatgaggggcagacgtggaaagataatccactctatgagacatctgtaaaagaaagtgtctcccagctgcaaactgacggctcctcacagggttcagaaagcaatgaaagtagagagcccgatggtgcacaagtgctggtagctaacccgcaaagcccggaagagcagatgcaagagttgcagagaaggttagcacagcttgagcttgaggctatccgaaggcaagaggaagaggccaagaggcgtgctgaaatagaagcagcagcaactaaaaaattggaagagaaggaggctgaagtagctgcattggtagcacaactagccttaatggccaataacaaggaaagggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

130

Amino Acids

14.33

Weight (kDa)

4.49

Isoelectric Point (pI)

76.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16861 FvH4_3g30530 FvH4_4g10331
prunus_persica	Prupe.2G142600_v2.0.a1 Prupe.5G153300_v2.0.a1
pyrus_communis	pycom11g20890
rosa_chinensis	RchiOBHm_Chr1g0344221 RchiOBHm_Chr2g0147381 RchiOBHm_Chr2g0154091 RchiOBHm_Chr4g0394431 RchiOBHm_Chr4g0421521 RchiOBHm_Chr6g0274071 RchiOBHm_Chr6g0277071
rosa_laevigata	RLG00000014255
rosa_multiflora	Rmu_co8240637.1_g000001 Rmu_co8485309.1_g000002 Rmu_sc0000455.1_g000055 Rmu_sc0001846.1_g000005 Rmu_sc0002281.1_g000023 Rmu_sc0002772.1_g000021 Rmu_sc0003316.1_g000009 Rmu_sc0004915.1_g000013 Rmu_sc0005465.1_g000001 Rmu_sc0007612.1_g000028 Rmu_sc0009481.1_g000011 Rmu_sc0011709.1_g000004 Rmu_sc0012179.1_g000003 Rmu_sc0014556.1_g000001 Rmu_sc0018308.1_g000001 Rmu_sc0033766.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021100 Rroxscaffold_2G00111780 Rroxscaffold_3G00254520 Rroxscaffold_4G00318760 Rroxscaffold_4G00318770 Rroxscaffold_5G00364750 Rroxscaffold_5G00377430 Rroxscaffold_6G00423030 Rroxscaffold_7G00203610 Rroxscaffold_7G00203960
rosa_rugosa	Rorug01G0056200 Rorug07G0209200
rosa_samantha	Rh1AG072800 Rh1BG059400 Rh1BG092000 Rh1CG071900 Rh2BG331300 Rh2BG512600 Rh2BG515900 Rh2BG517600 Rh2DG120700 Rh2DG420800 Rh2DG433100 Rh2DG524200 Rh2DG529300 Rh4AG003200 Rh4BG121400 Rh4CG032100 Rh4CG052300 Rh5BG244400 Rh5CG363100 Rh6AG117400 Rh7BG296900 Rh7BG452300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	30, 188
AcoI	YGGCCR	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	28
AjiI	CACGTC	1 cut(s)	54
AluBI	AGCT	5 cut(s)	106, 182, 238, 244, 341
AluI	AGCT	5 cut(s)	106, 182, 238, 244, 341
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	2 cut(s)	71, 103
Alw44I	GTGCAC	1 cut(s)	165
AoxI	GGCC	2 cut(s)	273, 369
ApaLI	GTGCAC	1 cut(s)	165
ApeKI	GCWGC	4 cut(s)	106, 299, 302, 341
Asp718I	GGTACC	1 cut(s)	26
AsuC2I	CCSGG	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	4 cut(s)	93, 311, 314, 328
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	71, 103
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	6
BglI	GCCNNNNNGGC	1 cut(s)	368
BisI	GCNGC	4 cut(s)	107, 300, 303, 342
BlsI	GCNGC	4 cut(s)	108, 301, 304, 343
Bme1390I	CCNGG	1 cut(s)	197
BmgBI	CACGTC	1 cut(s)	54
BmiI	GGNNCC	2 cut(s)	28, 121
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	2 cut(s)	41, 198
BpuEI	CTTGAG	2 cut(s)	260, 266
BpuMI	CCSGG	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	148
BseMI	GCAATG	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	112
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	4 cut(s)	93, 311, 314, 328
BseYI	CCCAGC	1 cut(s)	102
BshFI	GGCC	2 cut(s)	275, 371
BshNI	GGYRCC	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	197
BsmAI	GTCTC	2 cut(s)	71, 103
BsnI	GGCC	2 cut(s)	275, 371
Bsp1286I	GDGCHC	2 cut(s)	159, 169
BspACI	CCGC	2 cut(s)	30, 188
BspANI	GGCC	2 cut(s)	275, 371
BspLI	GGNNCC	2 cut(s)	28, 121
BspQI	GCTCTTC	1 cut(s)	195
BspT107I	GGYRCC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	148
Bst6I	CTCTTC	3 cut(s)	195, 264, 315
BstAPI	GCANNNNNTGC	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	285
BstMAI	GTCTC	2 cut(s)	71, 103
BstMWI	GCNNNNNNNGC	5 cut(s)	217, 338, 350, 359, 368
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	169
BstV1I	GCAGC	4 cut(s)	93, 311, 314, 328
BsuRI	GGCC	2 cut(s)	275, 371
BtrI	CACGTC	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	27
CviQI	GTAC	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	3 cut(s)	195, 264, 315
EarI	CTCTTC	3 cut(s)	195, 264, 315
Eco24I	GRGCYC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	159
FaiI	YATR	1 cut(s)	75
FauI	CCCGC	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	107, 300, 303, 342
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	4 cut(s)	107, 300, 303, 342
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	4 cut(s)	107, 300, 303, 342
GsaI	CCCAGC	1 cut(s)	106
HaeIII	GGCC	2 cut(s)	275, 371
HapII	CCGG	1 cut(s)	197
HpaII	CCGG	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	6, 167
Hpy188I	TCNGA	3 cut(s)	37, 136, 257
Hpy8I	GTNNAC	2 cut(s)	6, 167
HpyAV	CCTTC	3 cut(s)	219, 252, 319
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	5 cut(s)	109, 167, 211, 220, 344
HpyF10VI	GCNNNNNNNGC	5 cut(s)	217, 338, 350, 359, 368
HpySE526I	ACGT	1 cut(s)	53
KpnI	GGTACC	1 cut(s)	30
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	4 cut(s)	113, 116, 161, 210
Lsp1109I	GCAGC	4 cut(s)	93, 311, 314, 328
LweI	GCATC	2 cut(s)	41, 198
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	53
MboII	GAAGA	4 cut(s)	50, 212, 281, 332
MhlI	GDGCHC	2 cut(s)	159, 169
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	1 cut(s)	314
MluNI	TGGCCA	1 cut(s)	371
MnlI	CCTC	7 cut(s)	37, 133, 241, 259, 265, 273, 322
Mox20I	TGGCCA	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	1 cut(s)	365
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	106
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	5 cut(s)	217, 338, 350, 359, 368
NciI	CCSGG	1 cut(s)	197
NlaIV	GGNNCC	2 cut(s)	28, 121
PciSI	GCTCTTC	1 cut(s)	195
PkrI	GCNGC	4 cut(s)	108, 301, 304, 343
PspFI	CCCAGC	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	28, 121
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	4 cut(s)	107, 300, 303, 342
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	2 cut(s)	159, 169
SetI	ASST	7 cut(s)	56, 108, 184, 230, 240, 246, 343
SfaNI	GCATC	2 cut(s)	41, 198
SfcI	CTRYAG	1 cut(s)	6
SmlI	CTYRAG	2 cut(s)	239, 245
SmoI	CTYRAG	2 cut(s)	239, 245
Sse9I	AATT	1 cut(s)	314
SsiI	CCGC	2 cut(s)	30, 188
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	195
TaiI	ACGT	1 cut(s)	56
TasI	AATT	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	4 cut(s)	106, 299, 302, 341
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	27
VneI	GTGCAC	1 cut(s)	165
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.