Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000949

Physical Location & Seq

Genomic Coordinates Reverse (-)

549798 .. 553175

Gene Structure 3378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG003200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGGCAGCAATCTCTGATCTATAGCTTCGTGGCTCGAGGCACTGTGATTCTTGCCGAGTACACAGAGTTCACCGGAAATTTCACCAGCATCGCCTCTCAATGCCTCCAGAAGCTTCCTGCCTCCAACAACAAGTTCACCTACAATTGCGATGGCCACACCTTCAATTACCTCGTCGAAAACGGCTTCACCTACTGTGTAGTTGCAGCTGAATCTGCAGGTAGGCAAATTCCCATTGCCTATCTAGAGAGAATCAAGGATGATTTCAACAAAAGATATGCTGGTGGAAAAGGTGGGACTGCAACAGCCAATGGACTGAACAGAGAATTTGGGTATTTAGTTTTAAGCACTCACTTTCGTGATGAAGATTATGGTGCAACAATCAGTTTTTCATTAATATGCTTAACTTTGATGTGTATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

141

Amino Acids

15.66

Weight (kDa)

6.07

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 111	3e-22	Regulated-SNARE-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16861 FvH4_3g30530 FvH4_4g10331
prunus_persica	Prupe.2G142600_v2.0.a1 Prupe.5G153300_v2.0.a1
pyrus_communis	pycom11g20890
rosa_chinensis	RchiOBHm_Chr1g0344221 RchiOBHm_Chr2g0147381 RchiOBHm_Chr2g0154091 RchiOBHm_Chr4g0394431 RchiOBHm_Chr4g0421521 RchiOBHm_Chr6g0274071 RchiOBHm_Chr6g0277071
rosa_laevigata	RLG00000014255
rosa_multiflora	Rmu_co8240637.1_g000001 Rmu_co8485309.1_g000002 Rmu_sc0000455.1_g000055 Rmu_sc0001846.1_g000005 Rmu_sc0002281.1_g000023 Rmu_sc0002772.1_g000021 Rmu_sc0003316.1_g000009 Rmu_sc0004915.1_g000013 Rmu_sc0005465.1_g000001 Rmu_sc0007612.1_g000028 Rmu_sc0009481.1_g000011 Rmu_sc0011709.1_g000004 Rmu_sc0012179.1_g000003 Rmu_sc0014556.1_g000001 Rmu_sc0018308.1_g000001 Rmu_sc0033766.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021100 Rroxscaffold_2G00111780 Rroxscaffold_3G00254520 Rroxscaffold_4G00318760 Rroxscaffold_4G00318770 Rroxscaffold_5G00364750 Rroxscaffold_5G00377430 Rroxscaffold_6G00423030 Rroxscaffold_7G00203610 Rroxscaffold_7G00203960
rosa_rugosa	Rorug01G0056200 Rorug07G0209200
rosa_samantha	Rh1AG072800 Rh1BG059400 Rh1BG092000 Rh1CG071900 Rh2BG331300 Rh2BG512600 Rh2BG515900 Rh2BG517600 Rh2DG120700 Rh2DG420800 Rh2DG433100 Rh2DG524200 Rh2DG529300 Rh4AG003200 Rh4BG121400 Rh4CG032100 Rh4CG052300 Rh5BG244400 Rh5CG363100 Rh6AG117400 Rh7BG296900 Rh7BG452300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	3 cut(s)	79, 228, 326
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	2 cut(s)	166, 268
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AleI	CACNNNNGTG	1 cut(s)	357
AluBI	AGCT	3 cut(s)	27, 115, 209
AluI	AGCT	3 cut(s)	27, 115, 209
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	7, 206
ApoI	RAATTY	3 cut(s)	79, 228, 326
AseI	ATTAAT	1 cut(s)	395
AsuHPI	GGTGA	4 cut(s)	64, 76, 130, 181
AvaI	CYCGRG	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	19, 218
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	2 cut(s)	22, 216
BfuAI	ACCTGC	1 cut(s)	209
BisI	GCNGC	2 cut(s)	8, 207
BlsI	GCNGC	2 cut(s)	9, 208
BmeT110I	CYCGRG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	92
BsaWI	WCCGGW	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	234
BseXI	GCAGC	2 cut(s)	19, 218
BshFI	GGCC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	156
BsoBI	CYCGRG	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	156
BspMAI	CTGCAG	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	234
BssMI	GATC	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	46, 197
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstSFI	CTRYAG	2 cut(s)	22, 216
BstV1I	GCAGC	2 cut(s)	19, 218
BsuRI	GGCC	1 cut(s)	156
BtgZI	GCGATG	2 cut(s)	76, 165
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	61
CviJI	RGCY	7 cut(s)	27, 35, 115, 156, 186, 209, 308
CviKI_1	RGCY	7 cut(s)	27, 35, 115, 156, 186, 209, 308
CviQI	GTAC	1 cut(s)	61
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	154
Eco88I	CYCGRG	1 cut(s)	36
FaiI	YATR	5 cut(s)	24, 279, 372, 400, 419
FaqI	GGGAC	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	8, 207
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	8, 207
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	2 cut(s)	8, 207
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	1 cut(s)	75
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	3 cut(s)	49, 212, 252
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	4 cut(s)	64, 76, 130, 181
Hpy166II	GTNNAC	3 cut(s)	63, 72, 138
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	3 cut(s)	109, 245, 359
Hpy8I	GTNNAC	3 cut(s)	63, 72, 138
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	2 cut(s)	46, 197
HpyCH4V	TGCA	4 cut(s)	206, 218, 302, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	18
LpnPI	CCDG	6 cut(s)	88, 100, 122, 132, 204, 267
Lsp1109I	GCAGC	2 cut(s)	19, 218
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	245
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	1 cut(s)	377
MfeI	CAATTG	1 cut(s)	145
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	5 cut(s)	79, 145, 166, 228, 326
MluNI	TGGCCA	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	32, 106, 116, 133, 182
Mox20I	TGGCCA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	3 cut(s)	344, 395, 404
MslI	CAYNNNNRTG	2 cut(s)	357, 397
Msp20I	TGGCCA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	75
MunI	CAATTG	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	1 cut(s)	18
NmeAIII	GCCGAG	1 cut(s)	82
OliI	CACNNNNGTG	1 cut(s)	357
PaeR7I	CTCGAG	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	49, 212, 252
PkrI	GCNGC	2 cut(s)	9, 208
PshBI	ATTAAT	1 cut(s)	395
PspXI	VCTCGAGB	1 cut(s)	36
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PstI	CTGCAG	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	2 cut(s)	357, 397
SaqAI	TTAA	3 cut(s)	344, 395, 404
SatI	GCNGC	2 cut(s)	8, 207
Sau3AI	GATC	1 cut(s)	18
SetI	ASST	9 cut(s)	29, 117, 143, 164, 174, 194, 211, 223, 295
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	2 cut(s)	22, 216
Sfr274I	CTCGAG	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	36
SmiMI	CAYNNNNRTG	2 cut(s)	357, 397
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	5 cut(s)	79, 145, 166, 228, 326
SspMI	CTAG	1 cut(s)	245
TaaI	ACNGT	2 cut(s)	46, 197
TaqI	TCGA	2 cut(s)	37, 177
TasI	AATT	5 cut(s)	79, 145, 166, 228, 326
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	3 cut(s)	49, 212, 252
Tru1I	TTAA	3 cut(s)	344, 395, 404
Tru9I	TTAA	3 cut(s)	344, 395, 404
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	2 cut(s)	7, 206
TspDTI	ATGAA	2 cut(s)	378, 381
TspRI	CASTG	1 cut(s)	49
VspI	ATTAAT	1 cut(s)	395
XapI	RAATTY	3 cut(s)	79, 228, 326
XbaI	TCTAGA	1 cut(s)	244
XhoI	CTCGAG	1 cut(s)	36
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.