Rroxscaffold_4G00318770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000949
Physical Location & Seq
Reverse (-)
46125573 .. 46129363
3791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00318770.1

Sequence Viewer

Length: 426 bp
ATGGGGGCTATTCAAATTTTTTTTCAAAGAGATGTCAAGGATACTAGCTCTAAGCTTTTGACTATGCAAAGGTTGGTTAACATATTGACCAATTCAGATATACATGAAGATAACAACACCGAGATCGTGATTGTGACCTCTACCGAGGAGAAGGACGAAGACGAAGCTTCGGTGGCTCAAGAGTCCACCACCTCTTCACAAAGAGTTATCATACAAGAAGGTCAAAACATCGACCCAAAGCAAATAGCCGAAGGGGTAATCAAGGCCCTTAATGCACCATCAAGGCGCGCAGTAGGCCAAAGGGGGCTAGAAACAAGGAGTATCCGGTATTCAAGGATGACTCTTACTCGGGGCCCAATTACCCCCAACAAGGCTCACAAAATGACACCTGGAGATGCTTCTTCAATGGGACCGCATCGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.66

Weight (kDa)

8.1

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 288
AciI CCGC 1 cut(s) 413
AcsI RAATTY 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 370
AgsI TTSAA 4 cut(s) 14, 26, 333, 405
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 3 cut(s) 48, 55, 167
AluI AGCT 3 cut(s) 48, 55, 167
Ama87I CYCGRG 1 cut(s) 348
AoxI GGCC 3 cut(s) 264, 295, 352
ApaI GGGCCC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 15
AspLEI GCGC 2 cut(s) 288, 290
AspS9I GGNCC 4 cut(s) 265, 352, 353, 410
AvaI CYCGRG 1 cut(s) 348
AvaII GGWCC 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 165
BccI CCATC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 390
BciVI GTATCC 2 cut(s) 34, 332
BfaI CTAG 2 cut(s) 45, 308
BfuI GTATCC 2 cut(s) 34, 332
Bme1390I CCNGG 1 cut(s) 390
Bme18I GGWCC 1 cut(s) 410
BmeT110I CYCGRG 1 cut(s) 348
BmgT120I GGNCC 4 cut(s) 265, 352, 353, 410
BmiI GGNNCC 3 cut(s) 353, 354, 411
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 385
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 324
Bsc4I CCNNNNNNNGG 1 cut(s) 370
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 342
BseLI CCNNNNNNNGG 1 cut(s) 370
BsePI GCGCGC 1 cut(s) 286
BseRI GAGGAG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 356
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 3 cut(s) 266, 297, 354
BsiHKCI CYCGRG 1 cut(s) 348
BsiSI CCGG 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 370
BsnI GGCC 3 cut(s) 266, 297, 354
BsoBI CYCGRG 1 cut(s) 348
Bsp120I GGGCCC 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 356
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 1 cut(s) 413
BspANI GGCC 3 cut(s) 266, 297, 354
BspFNI CGCG 1 cut(s) 288
BspLI GGNNCC 3 cut(s) 353, 354, 411
BssECI CCNNGG 1 cut(s) 144
BssHII GCGCGC 1 cut(s) 286
BssMI GATC 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 390
Bst6I CTCTTC 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 342
BstFNI CGCG 1 cut(s) 288
BstHHI GCGC 2 cut(s) 288, 290
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 3 cut(s) 173, 272, 294
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 388
BstSLI GKGCMC 1 cut(s) 356
BstUI CGCG 1 cut(s) 288
BstV2I GAAGAC 1 cut(s) 165
BsuI GTATCC 2 cut(s) 34, 332
BsuRI GGCC 3 cut(s) 266, 297, 354
BtsCI GGATG 1 cut(s) 342
Cac8I GCNNGC 1 cut(s) 288
CfoI GCGC 2 cut(s) 288, 290
Cfr13I GGNCC 4 cut(s) 265, 352, 353, 410
CviAII CATG 1 cut(s) 104
DdeI CTNAG 1 cut(s) 51
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 410
Eco88I CYCGRG 1 cut(s) 348
EcoO109I RGGNCCY 2 cut(s) 265, 352
EcoRII CCWGG 1 cut(s) 388
EcoT38I GRGCYC 1 cut(s) 356
FaeI CATG 1 cut(s) 107
FaiI YATR 5 cut(s) 65, 83, 101, 105, 212
FatI CATG 1 cut(s) 103
FokI GGATG 1 cut(s) 349
FriOI GRGCYC 1 cut(s) 356
FspBI CTAG 2 cut(s) 45, 308
GlaI GCGC 2 cut(s) 287, 289
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 3 cut(s) 266, 297, 354
HapII CCGG 1 cut(s) 325
HhaI GCGC 2 cut(s) 288, 290
Hin1II CATG 1 cut(s) 107
Hin6I GCGC 2 cut(s) 286, 288
HinP1I GCGC 2 cut(s) 286, 288
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HindIII AAGCTT 2 cut(s) 53, 165
HinfI GANTC 2 cut(s) 182, 340
HpaI GTTAAC 1 cut(s) 79
HpaII CCGG 1 cut(s) 325
Hpy166II GTNNAC 2 cut(s) 79, 186
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 2 cut(s) 127, 179
Hpy8I GTNNAC 2 cut(s) 79, 186
HpyAV CCTTC 3 cut(s) 145, 212, 245
HpyCH4V TGCA 2 cut(s) 67, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 272, 294
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 1 cut(s) 107
HspAI GCGC 2 cut(s) 286, 288
KspAI GTTAAC 1 cut(s) 79
Kzo9I GATC 1 cut(s) 123
LpnPI CCDG 3 cut(s) 338, 375, 402
LweI GCATC 1 cut(s) 385
MaeI CTAG 2 cut(s) 45, 308
MaeIII GTNAC 1 cut(s) 133
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 4 cut(s) 119, 170, 186, 393
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 3 cut(s) 15, 91, 357
MlyI GAGTC 2 cut(s) 191, 334
MnlI CCTC 3 cut(s) 139, 148, 202
MseI TTAA 2 cut(s) 78, 270
MspI CCGG 1 cut(s) 325
MspR9I CCNGG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 390
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 3 cut(s) 173, 272, 294
NdeII GATC 1 cut(s) 123
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 3 cut(s) 353, 354, 411
NmuCI GTSAC 1 cut(s) 133
PauI GCGCGC 1 cut(s) 286
PleI GAGTC 2 cut(s) 190, 334
PpsI GAGTC 2 cut(s) 190, 334
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 3 cut(s) 353, 354, 411
PspOMI GGGCCC 1 cut(s) 352
PspPI GGNCC 4 cut(s) 265, 352, 353, 410
PteI GCGCGC 1 cut(s) 286
SaqAI TTAA 2 cut(s) 78, 270
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 4 cut(s) 265, 352, 353, 410
SchI GAGTC 2 cut(s) 191, 334
ScrFI CCNGG 1 cut(s) 390
SduI GDGCHC 1 cut(s) 356
SetI ASST 8 cut(s) 50, 57, 74, 140, 169, 194, 223, 391
SfaNI GCATC 1 cut(s) 385
SinI GGWCC 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 3 cut(s) 15, 91, 357
SsiI CCGC 1 cut(s) 413
SspMI CTAG 2 cut(s) 45, 308
StyD4I CCNGG 1 cut(s) 388
TaqI TCGA 2 cut(s) 231, 418
TasI AATT 3 cut(s) 15, 91, 357
Tru1I TTAA 2 cut(s) 78, 270
Tru9I TTAA 2 cut(s) 78, 270
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 410
XapI RAATTY 1 cut(s) 15
XspI CTAG 2 cut(s) 45, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.