Rh7BG296900

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000949
Physical Location & Seq
Reverse (-)
28114081 .. 28123227
9147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG296900.1

Sequence Viewer

Length: 1023 bp
ATGTCATTTGTGATTGGCCACGCTCATGTCATTAATACTGTGACGAAGACAAAGCTTGTAGGAAAACAAAATAAGGCAGTTGTGAAGGCTGTCAAAACCCAGATTCTCAAAGCCCCTTCCAAAAATGCTTTGAGGAACCAAAGGAAAAGAGCCGCCAAGGCTCAGAGGAAGAGGGATGCCAGTGCAAAGACAATTGAAGCCATCTTGGCGGAGATTGCCCAACTTGCACCTACTATGATGGAGGCTGGCCAAAAACAGAAGGCCCCTAAAGCTCCGAGGGTCCCGATGCCCTCTCATTTCATGGTTGGCACGATCCCTGTTTATCTGCCCACCATAGAGACTGTGATGGTAACTTCCACCAAGGGAAGTGATGAAGATGATTCAAAGGATAAGCGTGAAGCTCGTCTTTCACATGGGAGCTCACAAAGGTCAACCGTGCCTTCACAACAAGCAGCATCAGAAGAGAGCCAAGACTTGGACCCAAAGAAACTAGCTGAGGAGATAGTAAAGGCCCTCGATGCACCACCAAAAGCTCCAGGAAGACCAAAGGGAGCCAAGAACAAAGAGTATCCGGTTTATGGAGATGATTCTTACCCTGGACCGGTTACCCGCAATATGGCTAAAAAGATAACACCTGGTACATCGTCAACAAGTACCACGTCAGAAGAGGCATATTTGTCTCTGAAGGACAGTCCTTTATATGTGTCCTGGAAGGGCTGTGAGTTTTGGTCAAGAAATCCTGGAGCAAATGCAACAAAACTCTCTCCAATAGTTCCTGGAAACATTACCAAATACAAGGAAGGAAAAATTGGGGCATGTCGATATAAATGCAAGACAAATCAATGGCTTCTCAAGCACAAAACATGCTTAAAAAAAAAACAAGCAAAAGCATCTGTTCAAACAAAACAAAGCAAGCAACAAGTCACCCAGCAAGGGCTTCATGATATCACCTTGCTCACATTGAACAAAAAAAGAAAGAGAAGGGGGCAGGTTATTCCACCAATAGCGAATATGGGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

340

Amino Acids

37.29

Weight (kDa)

10.1

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 979
AccB7I CCANNNNNTGG 1 cut(s) 475
AciI CCGC 3 cut(s) 153, 209, 610
AclWI GGATC 1 cut(s) 307
AcoI YGGCCR 2 cut(s) 16, 247
AcuI CTGAAG 1 cut(s) 704
AfaI GTAC 2 cut(s) 640, 655
AfiI CCNNNNNNNGG 5 cut(s) 475, 578, 601, 616, 933
AgeI ACCGGT 1 cut(s) 601
AgsI TTSAA 4 cut(s) 197, 384, 899, 964
AjiI CACGTC 1 cut(s) 660
AjnI CCWGG 6 cut(s) 535, 595, 634, 707, 739, 775
AjuI GAANNNNNNNTTGG 2 cut(s) 792, 824
AluBI AGCT 6 cut(s) 55, 272, 401, 420, 494, 533
AluI AGCT 6 cut(s) 55, 272, 401, 420, 494, 533
Alw21I GWGCWC 1 cut(s) 422
Alw26I GTCTC 2 cut(s) 332, 684
AlwI GGATC 1 cut(s) 307
AoxI GGCC 4 cut(s) 16, 247, 261, 510
ApeKI GCWGC 1 cut(s) 452
AseI ATTAAT 1 cut(s) 33
AsiGI ACCGGT 1 cut(s) 601
AspS9I GGNCC 5 cut(s) 262, 280, 478, 511, 599
AsuHPI GGTGA 2 cut(s) 916, 940
AvaII GGWCC 3 cut(s) 280, 478, 599
BalI TGGCCA 2 cut(s) 18, 249
BanII GRGCYC 1 cut(s) 422
BbsI GAAGAC 2 cut(s) 53, 547
Bbv12I GWGCWC 1 cut(s) 422
BbvCI CCTCAGC 1 cut(s) 495
BbvI GCAGC 1 cut(s) 464
BccI CCATC 3 cut(s) 209, 232, 340
BcgI CGANNNNNNTGC 2 cut(s) 810, 844
BciT130I CCWGG 6 cut(s) 537, 597, 636, 709, 741, 777
BciVI GTATCC 1 cut(s) 579
BcoDI GTCTC 2 cut(s) 332, 684
BfaI CTAG 1 cut(s) 491
BfuAI ACCTGC 1 cut(s) 979
BfuI GTATCC 1 cut(s) 579
BglI GCCNNNNNGGC 2 cut(s) 158, 206
BisI GCNGC 2 cut(s) 153, 453
BlsI GCNGC 2 cut(s) 154, 454
Bme1390I CCNGG 6 cut(s) 537, 597, 636, 709, 741, 777
Bme18I GGWCC 3 cut(s) 280, 478, 599
BmgBI CACGTC 1 cut(s) 660
BmgT120I GGNCC 5 cut(s) 262, 280, 478, 511, 599
BmiI GGNNCC 6 cut(s) 137, 264, 281, 282, 480, 553
BmrFI CCNGG 6 cut(s) 537, 597, 636, 709, 741, 777
BmsI GCATC 5 cut(s) 166, 276, 464, 508, 899
BpiI GAAGAC 2 cut(s) 53, 547
BpmI CTGGAG 2 cut(s) 519, 762
Bpu10I CCTNAGC 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 836
BsaJI CCNNGG 4 cut(s) 156, 275, 360, 595
BsaWI WCCGGW 2 cut(s) 571, 601
Bsc4I CCNNNNNNNGG 5 cut(s) 475, 578, 601, 616, 933
Bse118I RCCGGY 1 cut(s) 601
Bse1I ACTGG 1 cut(s) 180
BseBI CCWGG 6 cut(s) 537, 597, 636, 709, 741, 777
BseDI CCNNGG 4 cut(s) 156, 275, 360, 595
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 5 cut(s) 475, 578, 601, 616, 933
BseMII CTCAG 2 cut(s) 176, 486
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 512
BseXI GCAGC 1 cut(s) 464
BseYI CCCAGC 1 cut(s) 927
BshFI GGCC 4 cut(s) 18, 249, 263, 512
BshTI ACCGGT 1 cut(s) 601
BsiHKAI GWGCWC 1 cut(s) 422
BsiSI CCGG 2 cut(s) 572, 602
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 5 cut(s) 475, 578, 601, 616, 933
BsmAI GTCTC 2 cut(s) 332, 684
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 4 cut(s) 18, 249, 263, 512
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 1 cut(s) 312
BspACI CCGC 3 cut(s) 153, 209, 610
BspANI GGCC 4 cut(s) 18, 249, 263, 512
BspCNI CTCAG 2 cut(s) 175, 487
BspHI TCATGA 1 cut(s) 940
BspLI GGNNCC 6 cut(s) 137, 264, 281, 282, 480, 553
BspMI ACCTGC 1 cut(s) 979
BspPI GGATC 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 601
BsrI ACTGG 1 cut(s) 180
BssAI RCCGGY 1 cut(s) 601
BssECI CCNNGG 4 cut(s) 156, 275, 360, 595
BssMI GATC 1 cut(s) 312
BssT1I CCWWGG 2 cut(s) 156, 360
Bst2UI CCWGG 6 cut(s) 537, 597, 636, 709, 741, 777
Bst4CI ACNGT 4 cut(s) 40, 343, 436, 692
Bst6I CTCTTC 3 cut(s) 164, 456, 660
BstC8I GCNNGC 2 cut(s) 247, 914
BstDEI CTNAG 2 cut(s) 162, 495
BstEII GGTNACC 1 cut(s) 604
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 1 cut(s) 315
BstMAI GTCTC 2 cut(s) 332, 684
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 7 cut(s) 158, 206, 215, 224, 269, 518, 853
BstNI CCWGG 6 cut(s) 537, 597, 636, 709, 741, 777
BstNSI RCATGY 2 cut(s) 819, 867
BstPI GGTNACC 1 cut(s) 604
BstSCI CCNGG 6 cut(s) 535, 595, 634, 707, 739, 775
BstV1I GCAGC 1 cut(s) 464
BstV2I GAAGAC 2 cut(s) 53, 547
BsuI GTATCC 1 cut(s) 579
BsuRI GGCC 4 cut(s) 18, 249, 263, 512
BtrI CACGTC 1 cut(s) 660
BtsCI GGATG 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 187
BveI ACCTGC 1 cut(s) 979
Cac8I GCNNGC 2 cut(s) 247, 914
CciI TCATGA 1 cut(s) 940
Cfr10I RCCGGY 1 cut(s) 601
Cfr13I GGNCC 5 cut(s) 262, 280, 478, 511, 599
CsiI ACCWGGT 1 cut(s) 634
Csp6I GTAC 2 cut(s) 639, 654
CspAI ACCGGT 1 cut(s) 601
CviAII CATG 6 cut(s) 26, 301, 413, 816, 864, 941
CviQI GTAC 2 cut(s) 639, 654
DdeI CTNAG 2 cut(s) 162, 495
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
EaeI YGGCCR 2 cut(s) 16, 247
Eam1104I CTCTTC 3 cut(s) 164, 456, 660
EarI CTCTTC 3 cut(s) 164, 456, 660
EciI GGCGGA 1 cut(s) 224
Ecl136II GAGCTC 1 cut(s) 420
Eco130I CCWWGG 2 cut(s) 156, 360
Eco24I GRGCYC 1 cut(s) 422
Eco32I GATATC 1 cut(s) 946
Eco47I GGWCC 3 cut(s) 280, 478, 599
Eco53kI GAGCTC 1 cut(s) 420
Eco57I CTGAAG 1 cut(s) 704
Eco91I GGTNACC 1 cut(s) 604
EcoICRI GAGCTC 1 cut(s) 420
EcoO109I RGGNCCY 3 cut(s) 262, 280, 511
EcoO65I GGTNACC 1 cut(s) 604
EcoRII CCWGG 6 cut(s) 535, 595, 634, 707, 739, 775
EcoRV GATATC 1 cut(s) 946
EcoT14I CCWWGG 2 cut(s) 156, 360
EcoT38I GRGCYC 1 cut(s) 422
ErhI CCWWGG 2 cut(s) 156, 360
FaeI CATG 6 cut(s) 29, 304, 416, 819, 867, 944
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 1 cut(s) 266
FatI CATG 6 cut(s) 25, 300, 412, 815, 863, 940
FauI CCCGC 1 cut(s) 617
Fnu4HI GCNGC 2 cut(s) 153, 453
FokI GGATG 1 cut(s) 188
FriOI GRGCYC 1 cut(s) 422
Fsp4HI GCNGC 2 cut(s) 153, 453
FspBI CTAG 1 cut(s) 491
GluI GCNGC 2 cut(s) 153, 453
GsaI CCCAGC 1 cut(s) 931
GsuI CTGGAG 2 cut(s) 519, 762
HaeIII GGCC 4 cut(s) 18, 249, 263, 512
HapII CCGG 2 cut(s) 572, 602
Hin1II CATG 6 cut(s) 29, 304, 416, 819, 867, 944
HincII GTYRAC 2 cut(s) 432, 648
HindII GTYRAC 2 cut(s) 432, 648
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 3 cut(s) 103, 380, 587
HpaII CCGG 2 cut(s) 572, 602
HphI GGTGA 2 cut(s) 916, 940
Hpy166II GTNNAC 2 cut(s) 432, 648
Hpy188I TCNGA 5 cut(s) 165, 276, 460, 664, 684
Hpy188III TCNNGA 3 cut(s) 283, 732, 941
Hpy8I GTNNAC 2 cut(s) 432, 648
HpyAV CCTTC 8 cut(s) 79, 126, 253, 450, 679, 706, 794, 975
HpyCH4III ACNGT 4 cut(s) 40, 343, 436, 692
HpyCH4IV ACGT 1 cut(s) 659
HpyCH4V TGCA 5 cut(s) 185, 227, 521, 752, 831
HpyF10VI GCNNNNNNNGC 7 cut(s) 158, 206, 215, 224, 269, 518, 853
HpyF3I CTNAG 2 cut(s) 162, 495
HpySE526I ACGT 1 cut(s) 659
Hsp92II CATG 6 cut(s) 29, 304, 416, 819, 867, 944
KflI GGGWCCC 1 cut(s) 280
Kzo9I GATC 1 cut(s) 312
LmnI GCTCC 5 cut(s) 277, 417, 538, 551, 743
Lsp1109I GCAGC 1 cut(s) 464
LweI GCATC 5 cut(s) 166, 276, 464, 508, 899
MabI ACCWGGT 1 cut(s) 634
MaeI CTAG 1 cut(s) 491
MaeII ACGT 1 cut(s) 659
MaeIII GTNAC 4 cut(s) 40, 349, 604, 922
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 6 cut(s) 58, 181, 386, 473, 552, 677
MfeI CAATTG 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 422
MlsI TGGCCA 2 cut(s) 18, 249
MluCI AATT 3 cut(s) 192, 807, 1018
MluNI TGGCCA 2 cut(s) 18, 249
MnlI CCTC 9 cut(s) 126, 159, 165, 235, 270, 301, 490, 524, 661
Mox20I TGGCCA 2 cut(s) 18, 249
MscI TGGCCA 2 cut(s) 18, 249
MseI TTAA 2 cut(s) 33, 869
MslI CAYNNNNRTG 1 cut(s) 24
Msp20I TGGCCA 2 cut(s) 18, 249
MspI CCGG 2 cut(s) 572, 602
MspR9I CCNGG 6 cut(s) 537, 597, 636, 709, 741, 777
MunI CAATTG 1 cut(s) 192
MvaI CCWGG 6 cut(s) 537, 597, 636, 709, 741, 777
MwoI GCNNNNNNNGC 7 cut(s) 158, 206, 215, 224, 269, 518, 853
NdeII GATC 1 cut(s) 312
NlaIII CATG 6 cut(s) 29, 304, 416, 819, 867, 944
NlaIV GGNNCC 6 cut(s) 137, 264, 281, 282, 480, 553
NmuCI GTSAC 2 cut(s) 40, 922
NspI RCATGY 2 cut(s) 819, 867
PagI TCATGA 1 cut(s) 940
PfeI GAWTC 3 cut(s) 103, 380, 587
PflMI CCANNNNNTGG 1 cut(s) 475
PfoI TCCNGGA 4 cut(s) 535, 707, 739, 775
PinAI ACCGGT 1 cut(s) 601
PkrI GCNGC 2 cut(s) 154, 454
PpuMI RGGWCCY 1 cut(s) 280
PshBI ATTAAT 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 422
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 6 cut(s) 535, 595, 634, 707, 739, 775
PspEI GGTNACC 1 cut(s) 604
PspFI CCCAGC 1 cut(s) 927
PspGI CCWGG 6 cut(s) 535, 595, 634, 707, 739, 775
PspN4I GGNNCC 6 cut(s) 137, 264, 281, 282, 480, 553
PspPI GGNCC 5 cut(s) 262, 280, 478, 511, 599
PspPPI RGGWCCY 1 cut(s) 280
RsaI GTAC 2 cut(s) 640, 655
RsaNI GTAC 2 cut(s) 639, 654
RseI CAYNNNNRTG 1 cut(s) 24
SacI GAGCTC 1 cut(s) 422
SaqAI TTAA 2 cut(s) 33, 869
SatI GCNGC 2 cut(s) 153, 453
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 5 cut(s) 262, 280, 478, 511, 599
ScrFI CCNGG 6 cut(s) 537, 597, 636, 709, 741, 777
SduI GDGCHC 1 cut(s) 422
SexAI ACCWGGT 1 cut(s) 634
SfaNI GCATC 5 cut(s) 166, 276, 464, 508, 899
SinI GGWCC 3 cut(s) 280, 478, 599
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
Sse9I AATT 3 cut(s) 192, 807, 1018
SsiI CCGC 3 cut(s) 153, 209, 610
SspMI CTAG 1 cut(s) 491
SstI GAGCTC 1 cut(s) 422
StyD4I CCNGG 6 cut(s) 535, 595, 634, 707, 739, 775
StyI CCWWGG 2 cut(s) 156, 360
TaaI ACNGT 4 cut(s) 40, 343, 436, 692
TaiI ACGT 1 cut(s) 662
TaqI TCGA 2 cut(s) 516, 820
TasI AATT 3 cut(s) 192, 807, 1018
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 3 cut(s) 103, 380, 587
Tru1I TTAA 2 cut(s) 33, 869
Tru9I TTAA 2 cut(s) 33, 869
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 2 cut(s) 40, 922
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 2 cut(s) 40, 922
TspDTI ATGAA 3 cut(s) 289, 387, 929
TspRI CASTG 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 475
VpaK11BI GGWCC 3 cut(s) 280, 478, 599
VspI ATTAAT 1 cut(s) 33
XceI RCATGY 2 cut(s) 819, 867
XspI CTAG 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.