Rh7BG452300

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000949
Physical Location & Seq
Forward (+)
53142376 .. 53151089
8714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG452300.1

Sequence Viewer

Length: 834 bp
ATGTCATTTGTGATTGGCCACGCTCATGTCATTAATACTGTGACGAAGACAAAGCTTGTAGGAAAACAAAATAAGGCGGTTGTGAAGGCTGTCAAAACCCAGATTCTCAAAGCCCCTTCCAAAAATGCTTTGAGGAACCAAAGGAAAAGAGCCGCCAAGGCTCAGAGGAAGAGGGATGCCAGTGCAAAGACAATTGAAGCCATCTTGGCGGAGATTGCCCAACTTGCACCTACTATGATGGAGGCTGGCCAAAAACAGAAGGCCCCTAAAGCTCCGAGGGTCCCGATGCCCTCTCATTTCATGGTTGGCACGATCCCTGTTTATCTGCCCACCATAGAGACTGTGATGGTAACTTCCACCAAGGGAAGTGATGAAGATGATTCAAAGGATAAGCGTGAAGCTCGTCCTTCACATGGAAGCTCACAGAGGTCAACCGTGCCTTCACAACAAGCAGCATCAGAGGAGAGCCAAGACCTGGACCCAAAGAAACTAGCTGAGGAGATAGTGAAGGCCCTCGATGCACCACCAAAAGCTCTAGGGAGACCAAAAGGAGCCAAGAACAAGGAGTATCCAGTTTATGGAGGTGATTCTTACCCTGGACCAGTTACCCGCAATATGGCTAAAAGGGTGACACCTGGTACATCGTCAACAAGTACCACGTCAGAAGAGGGATATTTGTCTCTGAAGGACAATCCTTTATATGTGTCCTGGAAGGTGACTGGAAACAGTGCCAATAGTAATAACAAAGTTCTCATCAAGTTACAGCATGGTTATATGAATGTGACACAACTCGAGGGCTTCCCAAGCCCAATCATTCATACAGCTAGCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

277

Amino Acids

29.97

Weight (kDa)

9.88

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 475, 578
AciI CCGC 4 cut(s) 77, 153, 209, 610
AclWI GGATC 1 cut(s) 307
AcoI YGGCCR 2 cut(s) 16, 247
AcuI CTGAAG 1 cut(s) 704
AfaI GTAC 2 cut(s) 640, 655
AfiI CCNNNNNNNGG 4 cut(s) 413, 475, 578, 616
AgsI TTSAA 2 cut(s) 197, 384
AjiI CACGTC 1 cut(s) 660
AjnI CCWGG 4 cut(s) 474, 595, 634, 707
AluBI AGCT 8 cut(s) 55, 272, 401, 420, 494, 533, 824, 828
AluI AGCT 8 cut(s) 55, 272, 401, 420, 494, 533, 824, 828
Alw26I GTCTC 3 cut(s) 332, 535, 684
AlwI GGATC 1 cut(s) 307
Ama87I CYCGRG 1 cut(s) 791
AoxI GGCC 4 cut(s) 16, 247, 261, 510
ApeKI GCWGC 2 cut(s) 452, 828
AseI ATTAAT 1 cut(s) 33
AspS9I GGNCC 5 cut(s) 262, 280, 478, 511, 599
AsuHPI GGTGA 3 cut(s) 596, 640, 727
AsuNHI GCTAGC 1 cut(s) 824
AvaI CYCGRG 1 cut(s) 791
AvaII GGWCC 3 cut(s) 280, 478, 599
BalI TGGCCA 2 cut(s) 18, 249
BbsI GAAGAC 1 cut(s) 53
BbvCI CCTCAGC 1 cut(s) 495
BbvI GCAGC 2 cut(s) 464, 815
BccI CCATC 3 cut(s) 209, 232, 340
BciT130I CCWGG 4 cut(s) 476, 597, 636, 709
BciVI GTATCC 1 cut(s) 579
BcoDI GTCTC 3 cut(s) 332, 535, 684
BfaI CTAG 3 cut(s) 491, 536, 825
BfuI GTATCC 1 cut(s) 579
BglI GCCNNNNNGGC 2 cut(s) 158, 206
BisI GCNGC 3 cut(s) 153, 453, 829
BlsI GCNGC 3 cut(s) 154, 454, 830
Bme1390I CCNGG 4 cut(s) 476, 597, 636, 709
Bme18I GGWCC 3 cut(s) 280, 478, 599
BmeT110I CYCGRG 1 cut(s) 791
BmgBI CACGTC 1 cut(s) 660
BmgT120I GGNCC 5 cut(s) 262, 280, 478, 511, 599
BmiI GGNNCC 6 cut(s) 137, 264, 281, 282, 480, 553
BmrFI CCNGG 4 cut(s) 476, 597, 636, 709
BmsI GCATC 4 cut(s) 166, 276, 464, 508
BmtI GCTAGC 1 cut(s) 828
BpiI GAAGAC 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 495
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 4 cut(s) 156, 275, 360, 595
Bsc4I CCNNNNNNNGG 4 cut(s) 413, 475, 578, 616
Bse1I ACTGG 4 cut(s) 180, 572, 602, 724
BseBI CCWGG 4 cut(s) 476, 597, 636, 709
BseDI CCNNGG 4 cut(s) 156, 275, 360, 595
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 4 cut(s) 413, 475, 578, 616
BseMII CTCAG 2 cut(s) 176, 486
BseNI ACTGG 4 cut(s) 180, 572, 602, 724
BseRI GAGGAG 2 cut(s) 476, 512
BseXI GCAGC 2 cut(s) 464, 815
BshFI GGCC 4 cut(s) 18, 249, 263, 512
BsiHKCI CYCGRG 1 cut(s) 791
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 4 cut(s) 413, 475, 578, 616
BsmAI GTCTC 3 cut(s) 332, 535, 684
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 4 cut(s) 18, 249, 263, 512
Bso31I GGTCTC 1 cut(s) 535
BsoBI CYCGRG 1 cut(s) 791
Bsp143I GATC 1 cut(s) 312
BspACI CCGC 4 cut(s) 77, 153, 209, 610
BspANI GGCC 4 cut(s) 18, 249, 263, 512
BspCNI CTCAG 2 cut(s) 175, 487
BspLI GGNNCC 6 cut(s) 137, 264, 281, 282, 480, 553
BspOI GCTAGC 1 cut(s) 828
BspPI GGATC 1 cut(s) 307
BspTNI GGTCTC 1 cut(s) 535
BsrI ACTGG 4 cut(s) 180, 572, 602, 724
BssECI CCNNGG 4 cut(s) 156, 275, 360, 595
BssMI GATC 1 cut(s) 312
BssT1I CCWWGG 2 cut(s) 156, 360
Bst2UI CCWGG 4 cut(s) 476, 597, 636, 709
Bst4CI ACNGT 4 cut(s) 40, 343, 436, 728
Bst6I CTCTTC 2 cut(s) 164, 660
BstC8I GCNNGC 2 cut(s) 247, 826
BstDEI CTNAG 2 cut(s) 162, 495
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 1 cut(s) 315
BstMAI GTCTC 3 cut(s) 332, 535, 684
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 7 cut(s) 158, 206, 215, 224, 269, 518, 804
BstNI CCWGG 4 cut(s) 476, 597, 636, 709
BstSCI CCNGG 4 cut(s) 474, 595, 634, 707
BstV1I GCAGC 2 cut(s) 464, 815
BstV2I GAAGAC 1 cut(s) 53
BsuI GTATCC 1 cut(s) 579
BsuRI GGCC 4 cut(s) 18, 249, 263, 512
BtrI CACGTC 1 cut(s) 660
BtsCI GGATG 1 cut(s) 181
BtsIMutI CAGTG 2 cut(s) 187, 733
Cac8I GCNNGC 2 cut(s) 247, 826
Cfr13I GGNCC 5 cut(s) 262, 280, 478, 511, 599
CsiI ACCWGGT 1 cut(s) 634
Csp6I GTAC 2 cut(s) 639, 654
CviAII CATG 4 cut(s) 26, 301, 413, 767
CviQI GTAC 2 cut(s) 639, 654
DdeI CTNAG 2 cut(s) 162, 495
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
EaeI YGGCCR 2 cut(s) 16, 247
Eam1104I CTCTTC 2 cut(s) 164, 660
EarI CTCTTC 2 cut(s) 164, 660
EciI GGCGGA 1 cut(s) 224
Eco130I CCWWGG 2 cut(s) 156, 360
Eco31I GGTCTC 1 cut(s) 535
Eco47I GGWCC 3 cut(s) 280, 478, 599
Eco57I CTGAAG 1 cut(s) 704
Eco88I CYCGRG 1 cut(s) 791
EcoO109I RGGNCCY 3 cut(s) 262, 280, 511
EcoRII CCWGG 4 cut(s) 474, 595, 634, 707
EcoT14I CCWWGG 2 cut(s) 156, 360
ErhI CCWWGG 2 cut(s) 156, 360
FaeI CATG 4 cut(s) 29, 304, 416, 770
FaqI GGGAC 1 cut(s) 266
FatI CATG 4 cut(s) 25, 300, 412, 766
FauI CCCGC 1 cut(s) 617
Fnu4HI GCNGC 3 cut(s) 153, 453, 829
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 3 cut(s) 153, 453, 829
FspBI CTAG 3 cut(s) 491, 536, 825
GluI GCNGC 3 cut(s) 153, 453, 829
HaeIII GGCC 4 cut(s) 18, 249, 263, 512
Hin1II CATG 4 cut(s) 29, 304, 416, 770
HincII GTYRAC 2 cut(s) 432, 648
HindII GTYRAC 2 cut(s) 432, 648
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 3 cut(s) 103, 380, 587
HphI GGTGA 3 cut(s) 596, 640, 727
Hpy166II GTNNAC 2 cut(s) 432, 648
Hpy188I TCNGA 5 cut(s) 165, 276, 460, 664, 684
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 2 cut(s) 432, 648
HpyAV CCTTC 8 cut(s) 79, 126, 253, 417, 450, 502, 679, 706
HpyCH4III ACNGT 4 cut(s) 40, 343, 436, 728
HpyCH4IV ACGT 1 cut(s) 659
HpyCH4V TGCA 3 cut(s) 185, 227, 521
HpyF10VI GCNNNNNNNGC 7 cut(s) 158, 206, 215, 224, 269, 518, 804
HpyF3I CTNAG 2 cut(s) 162, 495
HpySE526I ACGT 1 cut(s) 659
Hsp92II CATG 4 cut(s) 29, 304, 416, 770
KflI GGGWCCC 1 cut(s) 280
Kzo9I GATC 1 cut(s) 312
LmnI GCTCC 2 cut(s) 277, 551
Lsp1109I GCAGC 2 cut(s) 464, 815
LweI GCATC 4 cut(s) 166, 276, 464, 508
MabI ACCWGGT 1 cut(s) 634
MaeI CTAG 3 cut(s) 491, 536, 825
MaeII ACGT 1 cut(s) 659
MaeIII GTNAC 7 cut(s) 40, 349, 604, 628, 715, 759, 781
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 4 cut(s) 58, 181, 386, 677
MfeI CAATTG 1 cut(s) 192
MlsI TGGCCA 2 cut(s) 18, 249
MluCI AATT 1 cut(s) 192
MluNI TGGCCA 2 cut(s) 18, 249
Mox20I TGGCCA 2 cut(s) 18, 249
MscI TGGCCA 2 cut(s) 18, 249
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 24
Msp20I TGGCCA 2 cut(s) 18, 249
MspR9I CCNGG 4 cut(s) 476, 597, 636, 709
MunI CAATTG 1 cut(s) 192
MvaI CCWGG 4 cut(s) 476, 597, 636, 709
MwoI GCNNNNNNNGC 7 cut(s) 158, 206, 215, 224, 269, 518, 804
NdeII GATC 1 cut(s) 312
NheI GCTAGC 1 cut(s) 824
NlaIII CATG 4 cut(s) 29, 304, 416, 770
NlaIV GGNNCC 6 cut(s) 137, 264, 281, 282, 480, 553
NmuCI GTSAC 4 cut(s) 40, 628, 715, 781
PaeR7I CTCGAG 1 cut(s) 791
PfeI GAWTC 3 cut(s) 103, 380, 587
PflMI CCANNNNNTGG 2 cut(s) 475, 578
PfoI TCCNGGA 1 cut(s) 707
PkrI GCNGC 3 cut(s) 154, 454, 830
PpuMI RGGWCCY 1 cut(s) 280
PshBI ATTAAT 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 4 cut(s) 474, 595, 634, 707
PspGI CCWGG 4 cut(s) 474, 595, 634, 707
PspN4I GGNNCC 6 cut(s) 137, 264, 281, 282, 480, 553
PspPI GGNCC 5 cut(s) 262, 280, 478, 511, 599
PspPPI RGGWCCY 1 cut(s) 280
PspXI VCTCGAGB 1 cut(s) 791
RsaI GTAC 2 cut(s) 640, 655
RsaNI GTAC 2 cut(s) 639, 654
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 3 cut(s) 153, 453, 829
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 5 cut(s) 262, 280, 478, 511, 599
ScrFI CCNGG 4 cut(s) 476, 597, 636, 709
SexAI ACCWGGT 1 cut(s) 634
SfaNI GCATC 4 cut(s) 166, 276, 464, 508
Sfr274I CTCGAG 1 cut(s) 791
SinI GGWCC 3 cut(s) 280, 478, 599
SlaI CTCGAG 1 cut(s) 791
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
Sse9I AATT 1 cut(s) 192
SsiI CCGC 4 cut(s) 77, 153, 209, 610
SspMI CTAG 3 cut(s) 491, 536, 825
StyD4I CCNGG 4 cut(s) 474, 595, 634, 707
StyI CCWWGG 2 cut(s) 156, 360
TaaI ACNGT 4 cut(s) 40, 343, 436, 728
TaiI ACGT 1 cut(s) 662
TaqI TCGA 2 cut(s) 516, 792
TasI AATT 1 cut(s) 192
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 3 cut(s) 103, 380, 587
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 2 cut(s) 187, 733
TseFI GTSAC 4 cut(s) 40, 628, 715, 781
TseI GCWGC 2 cut(s) 452, 828
Tsp45I GTSAC 4 cut(s) 40, 628, 715, 781
TspDTI ATGAA 4 cut(s) 289, 387, 791, 806
TspRI CASTG 2 cut(s) 187, 733
Van91I CCANNNNNTGG 2 cut(s) 475, 578
VpaK11BI GGWCC 3 cut(s) 280, 478, 599
VspI ATTAAT 1 cut(s) 33
XhoI CTCGAG 1 cut(s) 791
XspI CTAG 3 cut(s) 491, 536, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.