Rh5CG363100

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000949
Physical Location & Seq
Reverse (-)
43613861 .. 43614277
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG363100.1

Sequence Viewer

Length: 417 bp
ATGGCTCAAAGGAAGAGGAATGCTGAGGCCAAGACGATTGAGGCCATTCTGGCAGAGATTGCTCAGTTGACGCCGTCCGTGGCTGAAAATGCCAAGGTCCCCAAGACTCTTTCAGCCACCAAGACCCACATGCTAGCCCATTTCATGTTTGGCACTATCTCGGTGTACCTACCTAGCACCGAGAATGTGATGGTGACCTCTACTAAGGAGGAGAATGAAGATGAAGTTTCAGTGGCTCAAGAGTCCACCACTTCTTCACAACAAGTTATCATTGACCCGAAGATGACTTTTACTCAGAGAAAATTACCCGCAACAAGGCCCACAAAAAGGCGCCTAAAGATACCTCTTCAGTGGGTACTGCATCAGAAGATGAGGGGCAAACGTGGAAAGACAACCCGCTCTATGAGGCATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

138

Amino Acids

15.62

Weight (kDa)

10.36

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 330
AccBSI CCGCTC 1 cut(s) 399
AciI CCGC 2 cut(s) 309, 397
AcuI CTGAAG 1 cut(s) 332
AcyI GRCGYC 2 cut(s) 71, 331
AfaI GTAC 2 cut(s) 167, 357
AfiI CCNNNNNNNGG 2 cut(s) 315, 327
AoxI GGCC 3 cut(s) 27, 42, 317
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 2 cut(s) 97, 318
AsuHPI GGTGA 1 cut(s) 205
AsuNHI GCTAGC 1 cut(s) 133
AvaII GGWCC 1 cut(s) 97
BanI GGYRCC 1 cut(s) 330
BbvCI CCTCAGC 1 cut(s) 24
BccI CCATC 1 cut(s) 184
BceAI ACGGC 1 cut(s) 58
BfaI CTAG 2 cut(s) 134, 174
BfoI RGCGCY 1 cut(s) 334
BglI GCCNNNNNGGC 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 2 cut(s) 97, 318
BmiI GGNNCC 2 cut(s) 99, 332
BmsI GCATC 1 cut(s) 370
BmtI GCTAGC 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 222
BsaHI GRCGYC 2 cut(s) 71, 331
BsaJI CCNNGG 2 cut(s) 78, 93
Bsc4I CCNNNNNNNGG 2 cut(s) 315, 327
BseDI CCNNGG 2 cut(s) 78, 93
BseLI CCNNNNNNNGG 2 cut(s) 315, 327
BseMII CTCAG 3 cut(s) 15, 77, 308
BseRI GAGGAG 1 cut(s) 224
BshFI GGCC 3 cut(s) 29, 44, 319
BshNI GGYRCC 1 cut(s) 330
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 315, 327
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 3 cut(s) 29, 44, 319
BspACI CCGC 2 cut(s) 309, 397
BspANI GGCC 3 cut(s) 29, 44, 319
BspCNI CTCAG 3 cut(s) 16, 76, 307
BspLI GGNNCC 2 cut(s) 99, 332
BspOI GCTAGC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 330
BsrBI CCGCTC 1 cut(s) 399
BssECI CCNNGG 2 cut(s) 78, 93
BssNI GRCGYC 2 cut(s) 71, 331
BssT1I CCWWGG 1 cut(s) 93
Bst6I CTCTTC 2 cut(s) 8, 351
BstACI GRCGYC 2 cut(s) 71, 331
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 4 cut(s) 24, 63, 204, 294
BstDSI CCRYGG 1 cut(s) 78
BstEII GGTNACC 1 cut(s) 193
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 1 cut(s) 333
BstMWI GCNNNNNNNGC 3 cut(s) 50, 59, 89
BstNSI RCATGY 1 cut(s) 133
BstPI GGTNACC 1 cut(s) 193
BsuRI GGCC 3 cut(s) 29, 44, 319
BtgI CCRYGG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 237, 356
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 97, 318
CseI GACGC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 166, 356
CviAII CATG 2 cut(s) 130, 145
CviJI RGCY 8 cut(s) 5, 29, 44, 83, 116, 137, 236, 319
CviKI_1 RGCY 8 cut(s) 5, 29, 44, 83, 116, 137, 236, 319
CviQI GTAC 2 cut(s) 166, 356
DdeI CTNAG 4 cut(s) 24, 63, 204, 294
DinI GGCGCC 1 cut(s) 332
Eam1104I CTCTTC 2 cut(s) 8, 351
EarI CTCTTC 2 cut(s) 8, 351
Eco130I CCWWGG 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 332
Eco91I GGTNACC 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 97
EcoO65I GGTNACC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 93
EgeI GGCGCC 1 cut(s) 332
EheI GGCGCC 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 133, 148
FaiI YATR 3 cut(s) 131, 146, 404
FaqI GGGAC 1 cut(s) 83
FatI CATG 2 cut(s) 129, 144
FauI CCCGC 2 cut(s) 316, 404
FspBI CTAG 2 cut(s) 134, 174
GlaI GCGC 1 cut(s) 332
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 3 cut(s) 29, 44, 319
HgaI GACGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 333
Hin1I GRCGYC 2 cut(s) 71, 331
Hin1II CATG 2 cut(s) 133, 148
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HinfI GANTC 2 cut(s) 106, 242
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 3 cut(s) 69, 166, 246
Hpy188I TCNGA 2 cut(s) 297, 366
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 3 cut(s) 69, 166, 246
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 1 cut(s) 361
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 59, 89
HpyF3I CTNAG 4 cut(s) 24, 63, 204, 294
HpySE526I ACGT 1 cut(s) 382
Hsp92I GRCGYC 2 cut(s) 71, 331
Hsp92II CATG 2 cut(s) 133, 148
HspAI GCGC 1 cut(s) 331
KasI GGCGCC 1 cut(s) 330
LpnPI CCDG 1 cut(s) 35
LweI GCATC 1 cut(s) 370
MaeI CTAG 2 cut(s) 134, 174
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 193
MbiI CCGCTC 1 cut(s) 399
MboII GAAGA 6 cut(s) 25, 230, 246, 292, 338, 379
MluCI AATT 1 cut(s) 302
Mly113I GGCGCC 1 cut(s) 331
MlyI GAGTC 2 cut(s) 100, 251
MnlI CCTC 8 cut(s) 9, 19, 34, 202, 208, 354, 366, 399
Mva1269I GAATGC 1 cut(s) 25
MwoI GCNNNNNNNGC 3 cut(s) 50, 59, 89
NarI GGCGCC 1 cut(s) 331
NheI GCTAGC 1 cut(s) 133
NlaIII CATG 2 cut(s) 133, 148
NlaIV GGNNCC 2 cut(s) 99, 332
NmuCI GTSAC 1 cut(s) 193
NspI RCATGY 1 cut(s) 133
PctI GAATGC 1 cut(s) 25
PflFI GACNNNGTC 1 cut(s) 73
PleI GAGTC 2 cut(s) 100, 250
PluTI GGCGCC 1 cut(s) 334
PpsI GAGTC 2 cut(s) 100, 250
PpuMI RGGWCCY 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 97
PspEI GGTNACC 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 99, 332
PspPI GGNCC 2 cut(s) 97, 318
PspPPI RGGWCCY 1 cut(s) 97
PsyI GACNNNGTC 1 cut(s) 73
RsaI GTAC 2 cut(s) 167, 357
RsaNI GTAC 2 cut(s) 166, 356
Sau96I GGNCC 2 cut(s) 97, 318
SchI GAGTC 2 cut(s) 100, 251
SetI ASST 6 cut(s) 99, 171, 175, 200, 346, 385
SfaNI GCATC 1 cut(s) 370
SfoI GGCGCC 1 cut(s) 332
SinI GGWCC 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
Sse9I AATT 1 cut(s) 302
SsiI CCGC 2 cut(s) 309, 397
SspDI GGCGCC 1 cut(s) 330
SspMI CTAG 2 cut(s) 134, 174
StyI CCWWGG 1 cut(s) 93
TaiI ACGT 1 cut(s) 385
TasI AATT 1 cut(s) 302
TscAI CASTG 2 cut(s) 237, 356
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 3 cut(s) 133, 231, 237
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 2 cut(s) 237, 356
Tth111I GACNNNGTC 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 97
XceI RCATGY 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XspI CTAG 2 cut(s) 134, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.