Rmu_sc0007612.1_g000028

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007612.1
OG0000949
Physical Location & Seq
Forward (+)
78603 .. 79972
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007612.1_g000028.1.cds

Sequence Viewer

Length: 399 bp
atggtgcgtccagaggacttggcggaactgtttagcggagatgaagttcggcggggctcggagctcaacggaggaaatttgccgctgatgattgggtcatgcaatggaggtttcctagcggccggaaaggtggcttcccggcgacggatttgcgacttccggataccgtggcatagcttgtcggccagcagagtaactaaatcaatggtgcttgttcagctgagctgccacctggcggtagggcttagcagtgatagctcagcggtagtgaggctggcggagcggagctcagcatttagccagcggtggccttcgccggcggttaagtggagctgctgcgatgcttgtttgagaatggtgttcctggcagagcgttgccttattggttgccgccgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.43

Weight (kDa)

9.33

Isoelectric Point (pI)

75.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 283
AccIII TCCGGA 1 cut(s) 159
AcoI YGGCCR 2 cut(s) 120, 183
AcsI RAATTY 1 cut(s) 76
AfiI CCNNNNNNNGG 2 cut(s) 144, 235
AjnI CCWGG 2 cut(s) 231, 363
AloI GAACNNNNNNTCC 2 cut(s) 30, 62
AluBI AGCT 7 cut(s) 64, 177, 220, 225, 258, 288, 333
AluI AGCT 7 cut(s) 64, 177, 220, 225, 258, 288, 333
Alw21I GWGCWC 2 cut(s) 66, 290
Aor13HI TCCGGA 1 cut(s) 159
AoxI GGCC 3 cut(s) 120, 183, 308
ApeKI GCWGC 3 cut(s) 225, 333, 336
ApoI RAATTY 1 cut(s) 76
AsuC2I CCSGG 1 cut(s) 139
BanII GRGCYC 3 cut(s) 59, 66, 290
Bbv12I GWGCWC 2 cut(s) 66, 290
BbvI GCAGC 3 cut(s) 212, 320, 323
BcgI CGANNNNNNTGC 2 cut(s) 132, 166
BciT130I CCWGG 2 cut(s) 233, 365
BciVI GTATCC 1 cut(s) 156
BcnI CCSGG 1 cut(s) 139
BfaI CTAG 1 cut(s) 116
BfuI GTATCC 1 cut(s) 156
BisI GCNGC 6 cut(s) 83, 120, 226, 334, 337, 391
BlpI GCTNAGC 4 cut(s) 221, 245, 259, 289
BlsI GCNGC 6 cut(s) 84, 121, 227, 335, 338, 392
Bme1390I CCNGG 3 cut(s) 139, 233, 365
BmrFI CCNGG 3 cut(s) 139, 233, 365
BmsI GCATC 1 cut(s) 331
BplI GAGNNNNNCTC 2 cut(s) 272, 304
Bpu1102I GCTNAGC 4 cut(s) 221, 245, 259, 289
BpuMI CCSGG 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 235
Bse118I RCCGGY 1 cut(s) 316
Bse3DI GCAATG 1 cut(s) 109
BseAI TCCGGA 1 cut(s) 159
BseBI CCWGG 2 cut(s) 233, 365
BseDI CCNNGG 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 144, 235
BseMI GCAATG 1 cut(s) 109
BseMII CTCAG 3 cut(s) 212, 273, 303
BseX3I CGGCCG 1 cut(s) 120
BseXI GCAGC 3 cut(s) 212, 320, 323
Bsh1285I CGRYCG 1 cut(s) 123
BshFI GGCC 3 cut(s) 122, 185, 310
BsiEI CGRYCG 1 cut(s) 123
BsiHKAI GWGCWC 2 cut(s) 66, 290
BsiSI CCGG 4 cut(s) 123, 139, 160, 317
BslI CCNNNNNNNGG 2 cut(s) 144, 235
BsnI GGCC 3 cut(s) 122, 185, 310
Bsp1286I GDGCHC 3 cut(s) 59, 66, 290
Bsp13I TCCGGA 1 cut(s) 159
Bsp1720I GCTNAGC 4 cut(s) 221, 245, 259, 289
BspANI GGCC 3 cut(s) 122, 185, 310
BspCNI CTCAG 3 cut(s) 213, 272, 302
BspEI TCCGGA 1 cut(s) 159
BsrBI CCGCTC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 316
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 167
Bst2UI CCWGG 2 cut(s) 233, 365
Bst4CI ACNGT 2 cut(s) 30, 168
BstC8I GCNNGC 4 cut(s) 187, 276, 302, 318
BstDEI CTNAG 4 cut(s) 221, 245, 259, 289
BstDSI CCRYGG 1 cut(s) 167
BstMCI CGRYCG 1 cut(s) 123
BstMWI GCNNNNNNNGC 3 cut(s) 217, 255, 280
BstNI CCWGG 2 cut(s) 233, 365
BstSCI CCNGG 3 cut(s) 137, 231, 363
BstV1I GCAGC 3 cut(s) 212, 320, 323
BstZI CGGCCG 1 cut(s) 120
BsuI GTATCC 1 cut(s) 156
BsuRI GGCC 3 cut(s) 122, 185, 310
BtgI CCRYGG 1 cut(s) 167
BtgZI GCGATG 1 cut(s) 354
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 4 cut(s) 187, 276, 302, 318
Cfr10I RCCGGY 1 cut(s) 316
CviAII CATG 1 cut(s) 99
DdeI CTNAG 4 cut(s) 221, 245, 259, 289
EaeI YGGCCR 2 cut(s) 120, 183
EagI CGGCCG 1 cut(s) 120
EciI GGCGGA 2 cut(s) 38, 293
Ecl136II GAGCTC 2 cut(s) 64, 288
EclXI CGGCCG 1 cut(s) 120
Eco24I GRGCYC 3 cut(s) 59, 66, 290
Eco52I CGGCCG 1 cut(s) 120
Eco53kI GAGCTC 2 cut(s) 64, 288
EcoICRI GAGCTC 2 cut(s) 64, 288
EcoRII CCWGG 2 cut(s) 231, 363
EcoT38I GRGCYC 3 cut(s) 59, 66, 290
FaeI CATG 1 cut(s) 102
FaiI YATR 2 cut(s) 100, 174
FatI CATG 1 cut(s) 98
FauI CCCGC 1 cut(s) 45
Fnu4HI GCNGC 6 cut(s) 83, 120, 226, 334, 337, 391
FriOI GRGCYC 3 cut(s) 59, 66, 290
Fsp4HI GCNGC 6 cut(s) 83, 120, 226, 334, 337, 391
FspBI CTAG 1 cut(s) 116
GluI GCNGC 6 cut(s) 83, 120, 226, 334, 337, 391
HaeIII GGCC 3 cut(s) 122, 185, 310
HapII CCGG 4 cut(s) 123, 139, 160, 317
Hin1II CATG 1 cut(s) 102
HpaII CCGG 4 cut(s) 123, 139, 160, 317
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 11, 160
Hpy99I CGWCG 1 cut(s) 147
HpyAV CCTTC 1 cut(s) 321
HpyCH4III ACNGT 2 cut(s) 30, 168
HpyCH4V TGCA 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 3 cut(s) 217, 255, 280
HpyF3I CTNAG 4 cut(s) 221, 245, 259, 289
Hsp92II CATG 1 cut(s) 102
Kpn2I TCCGGA 1 cut(s) 159
KroI GCCGGC 1 cut(s) 316
KroNI GCCGGC 1 cut(s) 318
LmnI GCTCC 4 cut(s) 61, 280, 285, 330
Lsp1109I GCAGC 3 cut(s) 212, 320, 323
LweI GCATC 1 cut(s) 331
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 193
MbiI CCGCTC 1 cut(s) 283
MhlI GDGCHC 3 cut(s) 59, 66, 290
MluCI AATT 1 cut(s) 76
MnlI CCTC 4 cut(s) 7, 65, 101, 264
MreI CGCCGGCG 1 cut(s) 316
MroI TCCGGA 1 cut(s) 159
MroNI GCCGGC 1 cut(s) 316
MseI TTAA 1 cut(s) 324
MspA1I CMGCKG 4 cut(s) 85, 220, 263, 304
MspI CCGG 4 cut(s) 123, 139, 160, 317
MspR9I CCNGG 3 cut(s) 139, 233, 365
MvaI CCWGG 2 cut(s) 233, 365
MwoI GCNNNNNNNGC 3 cut(s) 217, 255, 280
NaeI GCCGGC 1 cut(s) 318
NciI CCSGG 1 cut(s) 139
NgoMIV GCCGGC 1 cut(s) 316
NlaIII CATG 1 cut(s) 102
PdiI GCCGGC 1 cut(s) 318
PkrI GCNGC 6 cut(s) 84, 121, 227, 335, 338, 392
Psp124BI GAGCTC 2 cut(s) 66, 290
Psp6I CCWGG 2 cut(s) 231, 363
PspGI CCWGG 2 cut(s) 231, 363
PvuII CAGCTG 1 cut(s) 220
SacI GAGCTC 2 cut(s) 66, 290
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 6 cut(s) 83, 120, 226, 334, 337, 391
ScrFI CCNGG 3 cut(s) 139, 233, 365
SduI GDGCHC 3 cut(s) 59, 66, 290
SfaNI GCATC 1 cut(s) 331
SgrAI CRCCGGYG 1 cut(s) 316
Sse9I AATT 1 cut(s) 76
SspMI CTAG 1 cut(s) 116
SstI GAGCTC 2 cut(s) 66, 290
StyD4I CCNGG 3 cut(s) 137, 231, 363
TaaI ACNGT 2 cut(s) 30, 168
TasI AATT 1 cut(s) 76
TauI GCSGC 3 cut(s) 85, 122, 393
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 256
TseI GCWGC 3 cut(s) 225, 333, 336
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 2 cut(s) 84, 160
TspRI CASTG 1 cut(s) 256
XapI RAATTY 1 cut(s) 76
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.