Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8240637.1

Orthogroup ID

OG0000949

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 679

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8240637.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 256 bp

atgttacggctaacatttttagttctgcaggatgttgatattgatgaggaggttgatgttattatttcagagtggatgggatacatgcttctgtatgagagtatgcttggaagtgtcattacagccagagatcgctggctaaaacctggaggtcttatacttccttcaaatgcaacgttgtacatagcacctatcacacatgctgatagatacagtgaaagcattgatttctggcgcaatgtttatggaattgata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_25 Methyltransf_31 PrmA

Protein Analysis

85

Amino Acids

9.83

Weight (kDa)

4.36

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16861 FvH4_3g30530 FvH4_4g10331
prunus_persica	Prupe.2G142600_v2.0.a1 Prupe.5G153300_v2.0.a1
pyrus_communis	pycom11g20890
rosa_chinensis	RchiOBHm_Chr1g0344221 RchiOBHm_Chr2g0147381 RchiOBHm_Chr2g0154091 RchiOBHm_Chr4g0394431 RchiOBHm_Chr4g0421521 RchiOBHm_Chr6g0274071 RchiOBHm_Chr6g0277071
rosa_laevigata	RLG00000014255
rosa_multiflora	Rmu_co8240637.1_g000001 Rmu_co8485309.1_g000002 Rmu_sc0000455.1_g000055 Rmu_sc0001846.1_g000005 Rmu_sc0002281.1_g000023 Rmu_sc0002772.1_g000021 Rmu_sc0003316.1_g000009 Rmu_sc0004915.1_g000013 Rmu_sc0005465.1_g000001 Rmu_sc0007612.1_g000028 Rmu_sc0009481.1_g000011 Rmu_sc0011709.1_g000004 Rmu_sc0012179.1_g000003 Rmu_sc0014556.1_g000001 Rmu_sc0018308.1_g000001 Rmu_sc0033766.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021100 Rroxscaffold_2G00111780 Rroxscaffold_3G00254520 Rroxscaffold_4G00318760 Rroxscaffold_4G00318770 Rroxscaffold_5G00364750 Rroxscaffold_5G00377430 Rroxscaffold_6G00423030 Rroxscaffold_7G00203610 Rroxscaffold_7G00203960
rosa_rugosa	Rorug01G0056200 Rorug07G0209200
rosa_samantha	Rh1AG072800 Rh1BG059400 Rh1BG092000 Rh1CG071900 Rh2BG331300 Rh2BG512600 Rh2BG515900 Rh2BG517600 Rh2DG120700 Rh2DG420800 Rh2DG433100 Rh2DG524200 Rh2DG529300 Rh4AG003200 Rh4BG121400 Rh4CG032100 Rh4CG052300 Rh5BG244400 Rh5CG363100 Rh6AG117400 Rh7BG296900 Rh7BG452300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	176
AfaI	GTAC	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	237
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	147
BciVI	GTATCC	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	26
BfuI	GTATCC	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	37, 81
BseMI	GCAATG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	62
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	130
BspMAI	CTGCAG	1 cut(s)	30
BsrDI	GCAATG	1 cut(s)	244
BsrGI	TGTACA	1 cut(s)	180
BssMI	GATC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	215
BstAUI	TGTACA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	37, 81
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	2 cut(s)	88, 203
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	37, 81
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	137
CfoI	GCGC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	2 cut(s)	85, 200
CviJI	RGCY	3 cut(s)	10, 125, 139
CviKI_1	RGCY	3 cut(s)	10, 125, 139
CviQI	GTAC	1 cut(s)	181
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	145
FaeI	CATG	2 cut(s)	88, 203
FaiI	YATR	7 cut(s)	86, 96, 104, 158, 185, 201, 246
FatI	CATG	2 cut(s)	84, 199
FokI	GGATG	2 cut(s)	44, 88
GlaI	GCGC	1 cut(s)	236
GsuI	CTGGAG	1 cut(s)	168
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	88, 203
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	28, 173
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	2 cut(s)	88, 203
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	6 cut(s)	14, 121, 132, 139, 159, 217
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MluCI	AATT	1 cut(s)	249
MnlI	CCTC	3 cut(s)	40, 43, 143
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	88, 203
NspI	RCATGY	2 cut(s)	88, 203
Psp1406I	AACGTT	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	30
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
Sau3AI	GATC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	5 cut(s)	54, 148, 154, 179, 193
SfcI	CTRYAG	1 cut(s)	26
SgeI	CNNG	9 cut(s)	41, 97, 119, 138, 148, 158, 159, 212, 244
Sse9I	AATT	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	1 cut(s)	179
TasI	AATT	1 cut(s)	249
TatI	WGTACW	1 cut(s)	180
TscAI	CASTG	1 cut(s)	220
TspRI	CASTG	1 cut(s)	220
XceI	RCATGY	2 cut(s)	88, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.