Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003316.1

Orthogroup ID

OG0000949

Physical Location & Seq

Genomic Coordinates Reverse (-)

28636 .. 31790

Gene Structure 3155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003316.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgcacctacccttttgttctcaaggcctatgccggcgtcggggacttgaatttgggaagtcggttcatgggtcggtggtgaaattcgggtttggtgatgatgtccatgttcagaacaccatggttcatatgtactgttgctgcagtggagggattgaaagtgcacgaaaggtgtttgatgaaatgtctaactgggactctgtttcgtggagcgcgatgattggagggtatgtgagggtggggtggtctagtgatgcggtggagttgtttaaggagatgcagatggcgggagtgaggagggatgagattactatagtttcggttttgtctgcctgtaccgatttggacgtatcagtacccagctatctctcttcttttgttctgggcacccagctctctctctgtctctctctctctcttccccatccttcaattggaaattggaagcaggttttgggatccgatgctaccattggcagcggactactgctagaccacaaaggaggagtcttggctccagaagcttccctcactctaactccaccaccaaactccaacagacgctccttccttccctctctcccctccttctcttactttaggactttcccgaccagacccaacccgtcccgccatggccatggcctcctcttccccggacaagatcgaagtcacgccgcagcagcagcagcacctcttcatcgagccttcgccgtccaaattctccaccgactctgtcgccgtctagacctcaccgctcgtctcttgctccgtcgacacacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

261

Amino Acids

28.6

Weight (kDa)

9.16

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16861 FvH4_3g30530 FvH4_4g10331
prunus_persica	Prupe.2G142600_v2.0.a1 Prupe.5G153300_v2.0.a1
pyrus_communis	pycom11g20890
rosa_chinensis	RchiOBHm_Chr1g0344221 RchiOBHm_Chr2g0147381 RchiOBHm_Chr2g0154091 RchiOBHm_Chr4g0394431 RchiOBHm_Chr4g0421521 RchiOBHm_Chr6g0274071 RchiOBHm_Chr6g0277071
rosa_laevigata	RLG00000014255
rosa_multiflora	Rmu_co8240637.1_g000001 Rmu_co8485309.1_g000002 Rmu_sc0000455.1_g000055 Rmu_sc0001846.1_g000005 Rmu_sc0002281.1_g000023 Rmu_sc0002772.1_g000021 Rmu_sc0003316.1_g000009 Rmu_sc0004915.1_g000013 Rmu_sc0005465.1_g000001 Rmu_sc0007612.1_g000028 Rmu_sc0009481.1_g000011 Rmu_sc0011709.1_g000004 Rmu_sc0012179.1_g000003 Rmu_sc0014556.1_g000001 Rmu_sc0018308.1_g000001 Rmu_sc0033766.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021100 Rroxscaffold_2G00111780 Rroxscaffold_3G00254520 Rroxscaffold_4G00318760 Rroxscaffold_4G00318770 Rroxscaffold_5G00364750 Rroxscaffold_5G00377430 Rroxscaffold_6G00423030 Rroxscaffold_7G00203610 Rroxscaffold_7G00203960
rosa_rugosa	Rorug01G0056200 Rorug07G0209200
rosa_samantha	Rh1AG072800 Rh1BG059400 Rh1BG092000 Rh1CG071900 Rh2BG331300 Rh2BG512600 Rh2BG515900 Rh2BG517600 Rh2DG120700 Rh2DG420800 Rh2DG433100 Rh2DG524200 Rh2DG529300 Rh4AG003200 Rh4BG121400 Rh4CG032100 Rh4CG052300 Rh5BG244400 Rh5CG363100 Rh6AG117400 Rh7BG296900 Rh7BG452300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	439
AccB1I	GGYRCC	1 cut(s)	386
AccBSI	CCGCTC	1 cut(s)	758
AccI	GTMKAC	1 cut(s)	775
AccII	CGCG	1 cut(s)	215
AciI	CCGC	6 cut(s)	257, 287, 480, 631, 678, 756
AclWI	GGATC	2 cut(s)	453, 466
AcoI	YGGCCR	1 cut(s)	637
AcsI	RAATTY	3 cut(s)	50, 83, 720
AcyI	GRCGYC	1 cut(s)	37
AfaI	GTAC	3 cut(s)	134, 337, 357
AfiI	CCNNNNNNNGG	2 cut(s)	40, 434
AgsI	TTSAA	3 cut(s)	50, 158, 432
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	3 cut(s)	363, 394, 524
AluI	AGCT	3 cut(s)	363, 394, 524
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	2 cut(s)	410, 767
Alw44I	GTGCAC	1 cut(s)	162
AlwI	GGATC	2 cut(s)	453, 466
AoxI	GGCC	3 cut(s)	25, 637, 643
ApaLI	GTGCAC	1 cut(s)	162
ApeKI	GCWGC	6 cut(s)	141, 477, 680, 683, 686, 689
ApoI	RAATTY	3 cut(s)	50, 83, 720
ArsI	GACNNNNNNTTYG	2 cut(s)	492, 524
AspLEI	GCGC	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	657
AsuHPI	GGTGA	3 cut(s)	91, 107, 745
BaeGI	GKGCMC	2 cut(s)	166, 389
BalI	TGGCCA	1 cut(s)	639
BamHI	GGATCC	1 cut(s)	458
BanI	GGYRCC	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	6 cut(s)	128, 489, 692, 695, 698, 701
BccI	CCATC	2 cut(s)	277, 432
BceAI	ACGGC	2 cut(s)	698, 726
BcnI	CCSGG	1 cut(s)	657
BcoDI	GTCTC	2 cut(s)	410, 767
BfaI	CTAG	3 cut(s)	249, 491, 746
BfmI	CTRYAG	2 cut(s)	142, 312
BfuAI	ACCTGC	1 cut(s)	439
BisI	GCNGC	7 cut(s)	142, 478, 678, 681, 684, 687, 690
BlsI	GCNGC	7 cut(s)	143, 479, 679, 682, 685, 688, 691
Bme1390I	CCNGG	1 cut(s)	657
BmiI	GGNNCC	3 cut(s)	388, 460, 516
BmrFI	CCNGG	1 cut(s)	657
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	3 cut(s)	244, 267, 454
BmuI	ACTGGG	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	657
BsaHI	GRCGYC	1 cut(s)	37
BsaJI	CCNNGG	4 cut(s)	120, 634, 640, 655
BsaXI	ACNNNNNCTCC	6 cut(s)	216, 246, 523, 548, 553, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 434
Bse118I	RCCGGY	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	197
BseDI	CCNNGG	4 cut(s)	120, 634, 640, 655
BseGI	GGATG	2 cut(s)	307, 424
BseLI	CCNNNNNNNGG	2 cut(s)	40, 434
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	3 cut(s)	310, 519, 638
BseSI	GKGCMC	2 cut(s)	166, 389
BseXI	GCAGC	6 cut(s)	128, 489, 692, 695, 698, 701
BseYI	CCCAGC	2 cut(s)	359, 390
Bsh1236I	CGCG	1 cut(s)	215
BshFI	GGCC	3 cut(s)	27, 639, 645
BshNI	GGYRCC	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	34, 657
BslFI	GGGAC	3 cut(s)	57, 209, 613
BslI	CCNNNNNNNGG	2 cut(s)	40, 434
BsmAI	GTCTC	2 cut(s)	410, 767
BsmBI	CGTCTC	1 cut(s)	767
BsmFI	GGGAC	3 cut(s)	57, 209, 613
BsnI	GGCC	3 cut(s)	27, 639, 645
Bsp1286I	GDGCHC	2 cut(s)	166, 389
Bsp143I	GATC	2 cut(s)	458, 664
Bsp19I	CCATGG	3 cut(s)	120, 634, 640
BspACI	CCGC	6 cut(s)	257, 287, 480, 631, 678, 756
BspANI	GGCC	3 cut(s)	27, 639, 645
BspFNI	CGCG	1 cut(s)	215
BspLI	GGNNCC	3 cut(s)	388, 460, 516
BspMAI	CTGCAG	1 cut(s)	146
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	2 cut(s)	453, 466
BspT107I	GGYRCC	1 cut(s)	386
BsrBI	CCGCTC	1 cut(s)	758
BsrFI	RCCGGY	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	33
BssECI	CCNNGG	4 cut(s)	120, 634, 640, 655
BssMI	GATC	2 cut(s)	458, 664
BssNI	GRCGYC	1 cut(s)	37
BssT1I	CCWWGG	3 cut(s)	120, 634, 640
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	4 cut(s)	376, 423, 656, 702
BstACI	GRCGYC	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	35
BstDSI	CCRYGG	3 cut(s)	120, 634, 640
BstF5I	GGATG	2 cut(s)	307, 424
BstFNI	CGCG	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	2 cut(s)	461, 667
BstMAI	GTCTC	2 cut(s)	410, 767
BstMBI	GATC	2 cut(s)	458, 664
BstMWI	GCNNNNNNNGC	4 cut(s)	521, 683, 686, 689
BstSCI	CCNGG	1 cut(s)	655
BstSFI	CTRYAG	2 cut(s)	142, 312
BstSLI	GKGCMC	2 cut(s)	166, 389
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	6 cut(s)	128, 489, 692, 695, 698, 701
BstX2I	RGATCY	1 cut(s)	458
BstXI	CCANNNNNNTGG	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	458
BsuRI	GGCC	3 cut(s)	27, 639, 645
BtgI	CCRYGG	3 cut(s)	120, 634, 640
BtgZI	GCGATG	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	307, 424
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	151
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	35
CfoI	GCGC	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	33
CseI	GACGC	2 cut(s)	26, 570
Csp6I	GTAC	3 cut(s)	133, 336, 356
CviAII	CATG	6 cut(s)	68, 107, 121, 635, 641, 783
CviJI	RGCY	8 cut(s)	27, 363, 394, 515, 524, 639, 645, 707
CviKI_1	RGCY	8 cut(s)	27, 363, 394, 515, 524, 639, 645, 707
CviQI	GTAC	3 cut(s)	133, 336, 356
DpnI	GATC	2 cut(s)	460, 666
DpnII	GATC	2 cut(s)	458, 664
EaeI	YGGCCR	1 cut(s)	637
Eam1104I	CTCTTC	4 cut(s)	376, 423, 656, 702
EarI	CTCTTC	4 cut(s)	376, 423, 656, 702
Eco130I	CCWWGG	3 cut(s)	120, 634, 640
Eco147I	AGGCCT	1 cut(s)	27
EcoT14I	CCWWGG	3 cut(s)	120, 634, 640
ErhI	CCWWGG	3 cut(s)	120, 634, 640
Esp3I	CGTCTC	1 cut(s)	767
FaeI	CATG	6 cut(s)	71, 110, 124, 638, 644, 786
FaqI	GGGAC	3 cut(s)	57, 209, 613
FatI	CATG	6 cut(s)	67, 106, 120, 634, 640, 782
FauI	CCCGC	2 cut(s)	280, 638
FauNDI	CATATG	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	775
Fnu4HI	GCNGC	7 cut(s)	142, 478, 678, 681, 684, 687, 690
FokI	GGATG	2 cut(s)	314, 411
Fsp4HI	GCNGC	7 cut(s)	142, 478, 678, 681, 684, 687, 690
FspBI	CTAG	3 cut(s)	249, 491, 746
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	7 cut(s)	142, 478, 678, 681, 684, 687, 690
GsaI	CCCAGC	2 cut(s)	363, 394
GsuI	CTGGAG	1 cut(s)	501
HaeIII	GGCC	3 cut(s)	27, 639, 645
HapII	CCGG	2 cut(s)	34, 657
HgaI	GACGC	2 cut(s)	26, 570
HhaI	GCGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	6 cut(s)	71, 110, 124, 638, 644, 786
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	776
HindII	GTYRAC	1 cut(s)	776
HindIII	AAGCTT	1 cut(s)	522
HinfI	GANTC	3 cut(s)	197, 507, 732
HpaII	CCGG	2 cut(s)	34, 657
HphI	GGTGA	3 cut(s)	91, 107, 745
Hpy166II	GTNNAC	2 cut(s)	164, 776
Hpy188I	TCNGA	2 cut(s)	114, 463
Hpy188III	TCNNGA	3 cut(s)	518, 610, 746
Hpy8I	GTNNAC	2 cut(s)	164, 776
Hpy99I	CGWCG	2 cut(s)	42, 777
HpyAV	CCTTC	5 cut(s)	438, 577, 581, 598, 718
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	4 cut(s)	4, 144, 164, 280
HpyF10VI	GCNNNNNNNGC	4 cut(s)	521, 683, 686, 689
HpySE526I	ACGT	1 cut(s)	348
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	6 cut(s)	71, 110, 124, 638, 644, 786
HspAI	GCGC	1 cut(s)	213
KroI	GCCGGC	1 cut(s)	33
KroNI	GCCGGC	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	458, 664
LmnI	GCTCC	4 cut(s)	210, 520, 569, 774
Lsp1109I	GCAGC	6 cut(s)	128, 489, 692, 695, 698, 701
LweI	GCATC	3 cut(s)	244, 267, 454
MaeI	CTAG	3 cut(s)	249, 491, 746
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	671
MalI	GATC	2 cut(s)	460, 666
MbiI	CCGCTC	1 cut(s)	758
MboI	GATC	2 cut(s)	458, 664
MboII	GAAGA	4 cut(s)	363, 410, 643, 689
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	1 cut(s)	458
MhlI	GDGCHC	2 cut(s)	166, 389
MlsI	TGGCCA	1 cut(s)	639
MluCI	AATT	5 cut(s)	50, 83, 432, 439, 720
MluNI	TGGCCA	1 cut(s)	639
MlyI	GAGTC	3 cut(s)	191, 516, 726
MmeI	TCCRAC	1 cut(s)	579
Mox20I	TGGCCA	1 cut(s)	639
MroNI	GCCGGC	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	639
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	639
Msp20I	TGGCCA	1 cut(s)	639
MspA1I	CMGCKG	1 cut(s)	480
MspI	CCGG	2 cut(s)	34, 657
MspR9I	CCNGG	1 cut(s)	657
MunI	CAATTG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	4 cut(s)	521, 683, 686, 689
NaeI	GCCGGC	1 cut(s)	35
NciI	CCSGG	1 cut(s)	657
NcoI	CCATGG	3 cut(s)	120, 634, 640
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	2 cut(s)	458, 664
NgoMIV	GCCGGC	1 cut(s)	33
NlaIII	CATG	6 cut(s)	71, 110, 124, 638, 644, 786
NlaIV	GGNNCC	3 cut(s)	388, 460, 516
NmuCI	GTSAC	1 cut(s)	671
PceI	AGGCCT	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PdiI	GCCGGC	1 cut(s)	35
PflFI	GACNNNGTC	1 cut(s)	735
PkrI	GCNGC	7 cut(s)	143, 479, 679, 682, 685, 688, 691
PleI	GAGTC	3 cut(s)	191, 515, 726
PpsI	GAGTC	3 cut(s)	191, 515, 726
PspFI	CCCAGC	2 cut(s)	359, 390
PspN4I	GGNNCC	3 cut(s)	388, 460, 516
PstI	CTGCAG	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	458
PsyI	GACNNNGTC	1 cut(s)	735
RsaI	GTAC	3 cut(s)	134, 337, 357
RsaNI	GTAC	3 cut(s)	133, 336, 356
RseI	CAYNNNNRTG	1 cut(s)	639
SalI	GTCGAC	1 cut(s)	774
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	7 cut(s)	142, 478, 678, 681, 684, 687, 690
Sau3AI	GATC	2 cut(s)	458, 664
SchI	GAGTC	3 cut(s)	191, 516, 726
ScrFI	CCNGG	1 cut(s)	657
SduI	GDGCHC	2 cut(s)	166, 389
SetI	ASST	9 cut(s)	9, 174, 351, 365, 396, 453, 526, 697, 753
SfaNI	GCATC	3 cut(s)	244, 267, 454
SfcI	CTRYAG	2 cut(s)	142, 312
SmiMI	CAYNNNNRTG	1 cut(s)	639
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	5 cut(s)	50, 83, 432, 439, 720
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	6 cut(s)	257, 287, 480, 631, 678, 756
SspMI	CTAG	3 cut(s)	249, 491, 746
StuI	AGGCCT	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	655
StyI	CCWWGG	3 cut(s)	120, 634, 640
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	3 cut(s)	667, 703, 775
TasI	AATT	5 cut(s)	50, 83, 432, 439, 720
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	680
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	671
TseI	GCWGC	6 cut(s)	141, 477, 680, 683, 686, 689
Tsp45I	GTSAC	1 cut(s)	671
TspDTI	ATGAA	4 cut(s)	56, 116, 195, 689
TspGWI	ACGGA	1 cut(s)	761
TspRI	CASTG	1 cut(s)	151
Tth111I	GACNNNGTC	1 cut(s)	735
VneI	GTGCAC	1 cut(s)	162
XapI	RAATTY	3 cut(s)	50, 83, 720
XbaI	TCTAGA	1 cut(s)	745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	775
XspI	CTAG	3 cut(s)	249, 491, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.