Rroxscaffold_6G00423030

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000949
Physical Location & Seq
Reverse (-)
43918179 .. 43925862
7684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423030.1

Sequence Viewer

Length: 798 bp
ATGCCGGCGTATTTCATGATTGGCACCATCCCGGTGTACCGACCTAGCACCGAGAGTGTGATGGTGACCTCTACCGAGGAGAAGGATGAAGATGAAGCTTCGGTGGCTCAAGAGTCCACCACTTCTTCACAAAGAGTTATCATACGGGAAGGTCAAAACATTGACCCAAAGCAAATAGCCGAAGGAGTAATCAAGGCCCTCAATGCACCATCAAAGCGCGCAGGGAGGCCAAAGGGAGCTAGAAACAAAGAGTATCCCGTTTTCAAAGATGACTCTTACTCGGTGCCGGTCACCCGTAACAAGGCTCACAAAATGACGCCTAGAGATGCCTCTTCGGTGGGTGCCGCATCGAAAGATGAAGGGCAAACATGGAAAGATAATCCACATTATGAGACATCCGTAATAGAAAGAGTGTCCCAACCACAAAAATCGCAACCGACGGCTCCTCACGGGGTTCGTAAAGCGGTGAAAGCGAGAAAGCCCGATGGTGCACAAGTGTTGGTAGCTAACCCGCAAATCCCGGAAGAGCAGATGCAAGAGTTACGAGAGAAGAAGAGAGAACCTTTTATAGGTGAGGAAAGAGCCGAGCTTCTCCATATTTTCGATGTGGGACCGATGTGCTTCGGTCCCCGGCTCGGAGCTTCGCCGCTATCTTGGCGCGGCTCGTGGTGGAGAATCGCGGTTATCCGGGGTGAGCGGGGCTCGTGCGTAGCCCTCGCCGACCGTGTTTCCGTAGTTTGCACCCTTGGTGGGAGTTGGTACCGCCGGCGTAGCACGAGTGTAGCTCATTATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

265

Amino Acids

29.44

Weight (kDa)

9.4

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 759
AccB1I GGYRCC 4 cut(s) 23, 283, 341, 759
AccBSI CCGCTC 1 cut(s) 697
AccII CGCG 3 cut(s) 219, 660, 680
AciI CCGC 8 cut(s) 345, 464, 512, 647, 660, 680, 697, 763
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 2 cut(s) 38, 761
AfiI CCNNNNNNNGG 4 cut(s) 301, 569, 635, 750
AgsI TTSAA 1 cut(s) 265
AluBI AGCT 7 cut(s) 98, 239, 506, 589, 641, 785, 795
AluI AGCT 7 cut(s) 98, 239, 506, 589, 641, 785, 795
Alw21I GWGCWC 1 cut(s) 493
Alw26I GTCTC 1 cut(s) 386
Alw44I GTGCAC 1 cut(s) 489
AoxI GGCC 2 cut(s) 195, 227
ApaLI GTGCAC 1 cut(s) 489
Asp718I GGTACC 1 cut(s) 759
AspLEI GCGC 3 cut(s) 219, 221, 660
AspS9I GGNCC 3 cut(s) 196, 611, 626
AsuC2I CCSGG 4 cut(s) 32, 521, 631, 689
AsuHPI GGTGA 5 cut(s) 76, 283, 478, 584, 704
AvaII GGWCC 2 cut(s) 611, 626
BaeGI GKGCMC 1 cut(s) 493
BanI GGYRCC 4 cut(s) 23, 283, 341, 759
BanII GRGCYC 1 cut(s) 704
BauI CACGAG 3 cut(s) 664, 703, 775
Bbv12I GWGCWC 1 cut(s) 493
BccI CCATC 4 cut(s) 35, 55, 217, 479
BceAI ACGGC 1 cut(s) 456
BciVI GTATCC 1 cut(s) 264
BcnI CCSGG 4 cut(s) 32, 521, 631, 689
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 3 cut(s) 45, 240, 321
BfuI GTATCC 1 cut(s) 264
BisI GCNGC 3 cut(s) 345, 647, 661
BlsI GCNGC 3 cut(s) 346, 648, 662
Bme1390I CCNGG 4 cut(s) 32, 521, 631, 689
Bme18I GGWCC 2 cut(s) 611, 626
BmgT120I GGNCC 3 cut(s) 196, 611, 626
BmiI GGNNCC 7 cut(s) 25, 285, 343, 444, 612, 628, 761
BmrFI CCNGG 4 cut(s) 32, 521, 631, 689
BmsI GCATC 3 cut(s) 316, 356, 522
BplI GAGNNNNNCTC 3 cut(s) 686, 718, 769
BpuEI CTTGAG 1 cut(s) 93
BpuMI CCSGG 4 cut(s) 32, 521, 631, 689
BsaHI GRCGYC 1 cut(s) 317
BsaJI CCNNGG 4 cut(s) 75, 629, 688, 745
Bsc4I CCNNNNNNNGG 4 cut(s) 301, 569, 635, 750
Bse118I RCCGGY 3 cut(s) 4, 286, 765
BseDI CCNNGG 4 cut(s) 75, 629, 688, 745
BseGI GGATG 3 cut(s) 27, 91, 395
BseLI CCNNNNNNNGG 4 cut(s) 301, 569, 635, 750
BsePI GCGCGC 1 cut(s) 217
BseRI GAGGAG 2 cut(s) 92, 435
BseSI GKGCMC 1 cut(s) 493
Bsh1236I CGCG 3 cut(s) 219, 660, 680
Bsh1285I CGRYCG 1 cut(s) 724
BshFI GGCC 2 cut(s) 197, 229
BshNI GGYRCC 4 cut(s) 23, 283, 341, 759
BsiEI CGRYCG 1 cut(s) 724
BsiHKAI GWGCWC 1 cut(s) 493
BsiSI CCGG 7 cut(s) 5, 32, 287, 521, 631, 688, 766
BslFI GGGAC 3 cut(s) 400, 612, 624
BslI CCNNNNNNNGG 4 cut(s) 301, 569, 635, 750
BsmAI GTCTC 1 cut(s) 386
BsmFI GGGAC 3 cut(s) 400, 612, 624
BsnI GGCC 2 cut(s) 197, 229
Bsp1286I GDGCHC 2 cut(s) 493, 704
BspACI CCGC 8 cut(s) 345, 464, 512, 647, 660, 680, 697, 763
BspANI GGCC 2 cut(s) 197, 229
BspFNI CGCG 3 cut(s) 219, 660, 680
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 7 cut(s) 25, 285, 343, 444, 612, 628, 761
BspQI GCTCTTC 1 cut(s) 519
BspT107I GGYRCC 4 cut(s) 23, 283, 341, 759
BsrBI CCGCTC 1 cut(s) 697
BsrFI RCCGGY 3 cut(s) 4, 286, 765
BssAI RCCGGY 3 cut(s) 4, 286, 765
BssECI CCNNGG 4 cut(s) 75, 629, 688, 745
BssHII GCGCGC 1 cut(s) 217
BssNI GRCGYC 1 cut(s) 317
BssSI CACGAG 3 cut(s) 664, 703, 775
BssT1I CCWWGG 1 cut(s) 745
Bst2BI CACGAG 3 cut(s) 664, 703, 775
Bst4CI ACNGT 1 cut(s) 725
Bst6I CTCTTC 3 cut(s) 337, 519, 548
BstACI GRCGYC 1 cut(s) 317
BstC8I GCNNGC 3 cut(s) 6, 219, 767
BstEII GGTNACC 2 cut(s) 64, 289
BstENI CCTNNNNNAGG 1 cut(s) 567
BstF5I GGATG 3 cut(s) 27, 91, 395
BstFNI CGCG 3 cut(s) 219, 660, 680
BstHHI GCGC 3 cut(s) 219, 221, 660
BstMAI GTCTC 1 cut(s) 386
BstMCI CGRYCG 1 cut(s) 724
BstMWI GCNNNNNNNGC 5 cut(s) 104, 203, 470, 655, 771
BstPI GGTNACC 2 cut(s) 64, 289
BstSCI CCNGG 4 cut(s) 30, 519, 629, 687
BstSLI GKGCMC 1 cut(s) 493
BstUI CGCG 3 cut(s) 219, 660, 680
BsuI GTATCC 1 cut(s) 264
BsuRI GGCC 2 cut(s) 197, 229
BtsCI GGATG 3 cut(s) 27, 91, 395
Cac8I GCNNGC 3 cut(s) 6, 219, 767
CciI TCATGA 1 cut(s) 15
CfoI GCGC 3 cut(s) 219, 221, 660
Cfr10I RCCGGY 3 cut(s) 4, 286, 765
Cfr13I GGNCC 3 cut(s) 196, 611, 626
CseI GACGC 1 cut(s) 325
Csp6I GTAC 2 cut(s) 37, 760
CviAII CATG 2 cut(s) 16, 369
CviQI GTAC 2 cut(s) 37, 760
Eam1104I CTCTTC 3 cut(s) 337, 519, 548
EarI CTCTTC 3 cut(s) 337, 519, 548
Eco130I CCWWGG 1 cut(s) 745
Eco24I GRGCYC 1 cut(s) 704
Eco47I GGWCC 2 cut(s) 611, 626
Eco91I GGTNACC 2 cut(s) 64, 289
EcoNI CCTNNNNNAGG 1 cut(s) 567
EcoO109I RGGNCCY 1 cut(s) 196
EcoO65I GGTNACC 2 cut(s) 64, 289
EcoT14I CCWWGG 1 cut(s) 745
EcoT38I GRGCYC 1 cut(s) 704
ErhI CCWWGG 1 cut(s) 745
FaeI CATG 2 cut(s) 19, 372
FaiI YATR 7 cut(s) 17, 143, 370, 390, 569, 597, 792
FaqI GGGAC 3 cut(s) 400, 612, 624
FatI CATG 2 cut(s) 15, 368
FauI CCCGC 2 cut(s) 519, 690
Fnu4HI GCNGC 3 cut(s) 345, 647, 661
FokI GGATG 3 cut(s) 14, 98, 382
FriOI GRGCYC 1 cut(s) 704
Fsp4HI GCNGC 3 cut(s) 345, 647, 661
FspBI CTAG 3 cut(s) 45, 240, 321
GlaI GCGC 3 cut(s) 218, 220, 659
GluI GCNGC 3 cut(s) 345, 647, 661
HaeIII GGCC 2 cut(s) 197, 229
HapII CCGG 7 cut(s) 5, 32, 287, 521, 631, 688, 766
HgaI GACGC 1 cut(s) 325
HhaI GCGC 3 cut(s) 219, 221, 660
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 2 cut(s) 19, 372
Hin6I GCGC 3 cut(s) 217, 219, 658
HinP1I GCGC 3 cut(s) 217, 219, 658
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 3 cut(s) 113, 272, 675
HpaII CCGG 7 cut(s) 5, 32, 287, 521, 631, 688, 766
HphI GGTGA 5 cut(s) 76, 283, 478, 584, 704
Hpy166II GTNNAC 3 cut(s) 37, 117, 491
Hpy188I TCNGA 1 cut(s) 638
Hpy188III TCNNGA 2 cut(s) 16, 110
Hpy8I GTNNAC 3 cut(s) 37, 117, 491
Hpy99I CGWCG 1 cut(s) 442
HpyAV CCTTC 4 cut(s) 76, 143, 176, 353
HpyCH4III ACNGT 1 cut(s) 725
HpyCH4V TGCA 4 cut(s) 206, 491, 535, 741
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 203, 470, 655, 771
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 2 cut(s) 19, 372
HspAI GCGC 3 cut(s) 217, 219, 658
KpnI GGTACC 1 cut(s) 763
KroI GCCGGC 2 cut(s) 4, 765
KroNI GCCGGC 2 cut(s) 6, 767
LguI GCTCTTC 1 cut(s) 519
LmnI GCTCC 3 cut(s) 236, 448, 638
LpnPI CCDG 8 cut(s) 18, 45, 207, 300, 534, 644, 701, 779
LweI GCATC 3 cut(s) 316, 356, 522
MaeI CTAG 3 cut(s) 45, 240, 321
MaeIII GTNAC 4 cut(s) 64, 289, 296, 540
MbiI CCGCTC 1 cut(s) 697
MboII GAAGA 6 cut(s) 101, 117, 324, 536, 562, 565
MhlI GDGCHC 2 cut(s) 493, 704
MlyI GAGTC 2 cut(s) 122, 266
MnlI CCTC 8 cut(s) 70, 79, 209, 219, 340, 456, 568, 725
MreI CGCCGGCG 1 cut(s) 765
MroNI GCCGGC 2 cut(s) 4, 765
MslI CAYNNNNRTG 1 cut(s) 32
MspI CCGG 7 cut(s) 5, 32, 287, 521, 631, 688, 766
MspR9I CCNGG 4 cut(s) 32, 521, 631, 689
MvnI CGCG 3 cut(s) 219, 660, 680
MwoI GCNNNNNNNGC 5 cut(s) 104, 203, 470, 655, 771
NaeI GCCGGC 2 cut(s) 6, 767
NciI CCSGG 4 cut(s) 32, 521, 631, 689
NgoMIV GCCGGC 2 cut(s) 4, 765
NlaIII CATG 2 cut(s) 19, 372
NlaIV GGNNCC 7 cut(s) 25, 285, 343, 444, 612, 628, 761
NmeAIII GCCGAG 1 cut(s) 610
NmuCI GTSAC 2 cut(s) 64, 289
PagI TCATGA 1 cut(s) 15
PauI GCGCGC 1 cut(s) 217
PciSI GCTCTTC 1 cut(s) 519
PdiI GCCGGC 2 cut(s) 6, 767
PfeI GAWTC 1 cut(s) 675
PfoI TCCNGGA 1 cut(s) 519
PkrI GCNGC 3 cut(s) 346, 648, 662
PleI GAGTC 2 cut(s) 121, 266
PpsI GAGTC 2 cut(s) 121, 266
PspEI GGTNACC 2 cut(s) 64, 289
PspN4I GGNNCC 7 cut(s) 25, 285, 343, 444, 612, 628, 761
PspPI GGNCC 3 cut(s) 196, 611, 626
PteI GCGCGC 1 cut(s) 217
RsaI GTAC 2 cut(s) 38, 761
RsaNI GTAC 2 cut(s) 37, 760
RseI CAYNNNNRTG 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 519
SatI GCNGC 3 cut(s) 345, 647, 661
Sau96I GGNCC 3 cut(s) 196, 611, 626
SchI GAGTC 2 cut(s) 122, 266
ScrFI CCNGG 4 cut(s) 32, 521, 631, 689
SduI GDGCHC 2 cut(s) 493, 704
SfaNI GCATC 3 cut(s) 316, 356, 522
SgrAI CRCCGGYG 1 cut(s) 765
SinI GGWCC 2 cut(s) 611, 626
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
SsiI CCGC 8 cut(s) 345, 464, 512, 647, 660, 680, 697, 763
SspMI CTAG 3 cut(s) 45, 240, 321
StyD4I CCNGG 4 cut(s) 30, 519, 629, 687
StyI CCWWGG 1 cut(s) 745
TaaI ACNGT 1 cut(s) 725
TaqI TCGA 2 cut(s) 350, 603
TaqII GACCGA 2 cut(s) 614, 628
TauI GCSGC 3 cut(s) 347, 649, 663
TfiI GAWTC 1 cut(s) 675
TseFI GTSAC 2 cut(s) 64, 289
Tsp45I GTSAC 2 cut(s) 64, 289
TspDTI ATGAA 4 cut(s) 4, 102, 108, 372
TspGWI ACGGA 2 cut(s) 388, 721
VneI GTGCAC 1 cut(s) 489
VpaK11BI GGWCC 2 cut(s) 611, 626
XagI CCTNNNNNAGG 1 cut(s) 567
XspI CTAG 3 cut(s) 45, 240, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.