Rh2BG517600

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000949
Physical Location & Seq
Forward (+)
72600374 .. 72600880
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG517600.1

Sequence Viewer

Length: 507 bp
ATGGTTGGCACTATTCCGGTCTATCTACCTAGCACTGAGAGTTTGATGGTGACCTCTACTGAGGAGAAGGATGAAGACGAAGCTTCAGTGGCTCAAGAGTCCACTACCTCTTCACAAAGAGTTATCATACGGGAAGGTCAAAACATCGACCCAAAGCAAATAGCTGAAGGGGTAATCAAGGCCCTCGATGCACCATCAAGGCGTGCAGGGAGACCAAAGGGGGCTAGAAACAAAGAGTATCCGGTTTTCAAAGATGACTCTTACTCAGGGCCAGTCACTCGTAACAAGGCTCACAAAATGACGCCTAGAGATGCTTCTTCAGTGGGCACTGCATCAGAAGATAAGGGACAAACGTGGAAAGATAATCCACTCTATGAGACATCTGTAAAAGAAAGAGTCTCCCAGCTGCAAACTGACTGCTCCTCACAGGGTTCAGAAAGCAGTGAAAGCAGAGAACCCGATGGCGCACAAGTGCTGGTAGCTAACCCGCAAAGCCCTGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

168

Amino Acids

18.29

Weight (kDa)

4.91

Isoelectric Point (pI)

63.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 488
AcuI CTGAAG 3 cut(s) 69, 186, 303
AcyI GRCGYC 1 cut(s) 302
AgsI TTSAA 1 cut(s) 250
AluBI AGCT 4 cut(s) 83, 164, 406, 482
AluI AGCT 4 cut(s) 83, 164, 406, 482
Alw26I GTCTC 3 cut(s) 205, 371, 403
AoxI GGCC 2 cut(s) 180, 269
ApeKI GCWGC 1 cut(s) 406
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 2 cut(s) 181, 269
AsuHPI GGTGA 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 393
BccI CCATC 3 cut(s) 40, 202, 455
BciVI GTATCC 1 cut(s) 249
BcoDI GTCTC 3 cut(s) 205, 371, 403
BfaI CTAG 3 cut(s) 30, 225, 306
BfuI GTATCC 1 cut(s) 249
BisI GCNGC 1 cut(s) 407
BlsI GCNGC 1 cut(s) 408
BmgT120I GGNCC 2 cut(s) 181, 269
BmsI GCATC 3 cut(s) 178, 301, 341
BpiI GAAGAC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 302
BsaI GGTCTC 1 cut(s) 205
BsaWI WCCGGW 2 cut(s) 16, 241
Bse1I ACTGG 1 cut(s) 272
BseGI GGATG 1 cut(s) 76
BseMII CTCAG 3 cut(s) 27, 51, 279
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 2 cut(s) 77, 412
BseSI GKGCMC 1 cut(s) 329
BseXI GCAGC 1 cut(s) 393
BseYI CCCAGC 1 cut(s) 402
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 2 cut(s) 182, 271
BsiSI CCGG 2 cut(s) 17, 242
BslFI GGGAC 1 cut(s) 360
BsmAI GTCTC 3 cut(s) 205, 371, 403
BsmFI GGGAC 1 cut(s) 360
BsnI GGCC 2 cut(s) 182, 271
Bso31I GGTCTC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 329
BspACI CCGC 1 cut(s) 488
BspANI GGCC 2 cut(s) 182, 271
BspCNI CTCAG 3 cut(s) 28, 52, 278
BspTNI GGTCTC 1 cut(s) 205
BsrI ACTGG 1 cut(s) 272
BssNI GRCGYC 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 115
BstACI GRCGYC 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 3 cut(s) 36, 60, 265
BstEII GGTNACC 1 cut(s) 49
BstF5I GGATG 1 cut(s) 76
BstHHI GCGC 1 cut(s) 467
BstMAI GTCTC 3 cut(s) 205, 371, 403
BstMWI GCNNNNNNNGC 3 cut(s) 89, 188, 447
BstPI GGTNACC 1 cut(s) 49
BstSLI GKGCMC 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 393
BstV2I GAAGAC 1 cut(s) 81
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 2 cut(s) 182, 271
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 2 cut(s) 327, 448
BtsIMutI CAGTG 5 cut(s) 33, 93, 327, 327, 448
Cac8I GCNNGC 1 cut(s) 204
CfoI GCGC 1 cut(s) 467
Cfr13I GGNCC 2 cut(s) 181, 269
CseI GACGC 1 cut(s) 310
DdeI CTNAG 3 cut(s) 36, 60, 265
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco31I GGTCTC 1 cut(s) 205
Eco57I CTGAAG 3 cut(s) 69, 186, 303
Eco91I GGTNACC 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 49
FaiI YATR 2 cut(s) 128, 375
FaqI GGGAC 1 cut(s) 360
FauI CCCGC 1 cut(s) 495
Fnu4HI GCNGC 1 cut(s) 407
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 407
FspBI CTAG 3 cut(s) 30, 225, 306
GlaI GCGC 1 cut(s) 466
GluI GCNGC 1 cut(s) 407
GsaI CCCAGC 1 cut(s) 406
HaeIII GGCC 2 cut(s) 182, 271
HapII CCGG 2 cut(s) 17, 242
HgaI GACGC 1 cut(s) 310
HhaI GCGC 1 cut(s) 467
Hin1I GRCGYC 1 cut(s) 302
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HindIII AAGCTT 1 cut(s) 81
HinfI GANTC 3 cut(s) 98, 257, 396
HpaII CCGG 2 cut(s) 17, 242
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 2 cut(s) 337, 436
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 3 cut(s) 61, 128, 161
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 4 cut(s) 191, 206, 332, 409
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 188, 447
HpyF3I CTNAG 3 cut(s) 36, 60, 265
HpySE526I ACGT 1 cut(s) 353
Hsp92I GRCGYC 1 cut(s) 302
HspAI GCGC 1 cut(s) 465
LmnI GCTCC 1 cut(s) 425
LpnPI CCDG 8 cut(s) 30, 192, 252, 255, 285, 413, 416, 461
Lsp1109I GCAGC 1 cut(s) 393
LweI GCATC 3 cut(s) 178, 301, 341
MaeI CTAG 3 cut(s) 30, 225, 306
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 3 cut(s) 49, 274, 281
MboII GAAGA 4 cut(s) 86, 102, 309, 350
MhlI GDGCHC 1 cut(s) 329
MlyI GAGTC 3 cut(s) 107, 251, 405
MnlI CCTC 5 cut(s) 55, 64, 118, 194, 433
MspA1I CMGCKG 1 cut(s) 406
MspI CCGG 2 cut(s) 17, 242
MwoI GCNNNNNNNGC 3 cut(s) 89, 188, 447
NmuCI GTSAC 2 cut(s) 49, 274
PkrI GCNGC 1 cut(s) 408
PleI GAGTC 3 cut(s) 106, 251, 404
PpsI GAGTC 3 cut(s) 106, 251, 404
PspEI GGTNACC 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 402
PspPI GGNCC 2 cut(s) 181, 269
PvuII CAGCTG 1 cut(s) 406
SatI GCNGC 1 cut(s) 407
Sau96I GGNCC 2 cut(s) 181, 269
SchI GAGTC 3 cut(s) 107, 251, 405
SduI GDGCHC 1 cut(s) 329
SetI ASST 9 cut(s) 31, 56, 85, 110, 139, 166, 356, 408, 484
SfaNI GCATC 3 cut(s) 178, 301, 341
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
SsiI CCGC 1 cut(s) 488
SspMI CTAG 3 cut(s) 30, 225, 306
TaiI ACGT 1 cut(s) 356
TaqI TCGA 2 cut(s) 147, 186
TscAI CASTG 5 cut(s) 40, 93, 327, 334, 448
TseFI GTSAC 2 cut(s) 49, 274
TseI GCWGC 1 cut(s) 406
Tsp45I GTSAC 2 cut(s) 49, 274
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 5 cut(s) 40, 93, 327, 334, 448
XspI CTAG 3 cut(s) 30, 225, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.