Rh2BG512600

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000949
Physical Location & Seq
Reverse (-)
72030449 .. 72030940
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG512600.1

Sequence Viewer

Length: 492 bp
ATGGTTGGCACTATCCCGGTCTATCTACCTAGCACTGAGAGTGTGATGGTGACCTCTACTGAGGAGAAGGATGAAGACGAAGCTTCAGTGGCTCAAGAGTCCACTACCTCTTCACAAAGAGTTATCATACGGGAAGGTCAAAACATCGACCCAAAGCAAATAGTTGAAGGGGTAATCAAGGCCCTCGATGCACCATCAAGGCGTGCAGGGAGGCCAAAGGGGGCTAGAAACAAAGAGTATCCGGTTTTCAAAGATGACTCTTACTCAGGGCCAGTCACCCGCAACAAGGCTCACAAAATGATGCCTAGAGATGCTTCTTCAGTGGGTACTACATCAGAAGATAAGGGGCAAACGTGGAAAGATAATCCACTCTATGAGACATCTGTAAAAGAAAGAGTCTCCCAGTTGCAAATTGACGGCTCCTCACAGGGTTCAGAAAGCAGTGAAAGCAGAGAGCTCGATGGTGCACAAGTGCTGGTAGCTAACCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

163

Amino Acids

17.77

Weight (kDa)

5.04

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 280
AcuI CTGAAG 2 cut(s) 69, 303
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 2 cut(s) 167, 250
AluBI AGCT 3 cut(s) 83, 457, 482
AluI AGCT 3 cut(s) 83, 457, 482
Alw21I GWGCWC 2 cut(s) 459, 469
Alw26I GTCTC 2 cut(s) 371, 403
Alw44I GTGCAC 1 cut(s) 465
AoxI GGCC 3 cut(s) 180, 212, 269
ApaLI GTGCAC 1 cut(s) 465
AspS9I GGNCC 2 cut(s) 181, 269
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 61, 268
BaeGI GKGCMC 1 cut(s) 469
BanII GRGCYC 1 cut(s) 459
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 2 cut(s) 459, 469
BccI CCATC 3 cut(s) 40, 202, 455
BceAI ACGGC 1 cut(s) 433
BcgI CGANNNNNNTGC 2 cut(s) 439, 473
BciVI GTATCC 1 cut(s) 249
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 2 cut(s) 371, 403
BfaI CTAG 3 cut(s) 30, 225, 306
BfuI GTATCC 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 17
BmgT120I GGNCC 2 cut(s) 181, 269
BmiI GGNNCC 1 cut(s) 421
BmrFI CCNGG 1 cut(s) 17
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 3 cut(s) 178, 291, 301
BmuI ACTGGG 1 cut(s) 397
BpiI GAAGAC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 17
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse1I ACTGG 2 cut(s) 272, 403
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 3 cut(s) 27, 51, 279
BseNI ACTGG 2 cut(s) 272, 403
BseRI GAGGAG 2 cut(s) 77, 412
BseSI GKGCMC 1 cut(s) 469
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 3 cut(s) 182, 214, 271
BsiHKAI GWGCWC 2 cut(s) 459, 469
BsiSI CCGG 2 cut(s) 17, 242
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 2 cut(s) 371, 403
BsnI GGCC 3 cut(s) 182, 214, 271
Bsp1286I GDGCHC 2 cut(s) 459, 469
BspACI CCGC 1 cut(s) 280
BspANI GGCC 3 cut(s) 182, 214, 271
BspCNI CTCAG 3 cut(s) 28, 52, 278
BspLI GGNNCC 1 cut(s) 421
BsrI ACTGG 2 cut(s) 272, 403
Bst6I CTCTTC 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 3 cut(s) 36, 60, 265
BstEII GGTNACC 1 cut(s) 49
BstF5I GGATG 1 cut(s) 76
BstMAI GTCTC 2 cut(s) 371, 403
BstMWI GCNNNNNNNGC 3 cut(s) 89, 188, 447
BstPI GGTNACC 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 469
BstV2I GAAGAC 1 cut(s) 81
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 3 cut(s) 182, 214, 271
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 448
BtsIMutI CAGTG 4 cut(s) 33, 93, 327, 448
Cac8I GCNNGC 1 cut(s) 204
Cfr13I GGNCC 2 cut(s) 181, 269
Csp6I GTAC 1 cut(s) 327
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 3 cut(s) 36, 60, 265
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Ecl136II GAGCTC 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 459
Eco53kI GAGCTC 1 cut(s) 457
Eco57I CTGAAG 2 cut(s) 69, 303
Eco91I GGTNACC 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 457
EcoO109I RGGNCCY 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 459
FaiI YATR 2 cut(s) 128, 375
FauI CCCGC 1 cut(s) 287
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 459
FspBI CTAG 3 cut(s) 30, 225, 306
HaeIII GGCC 3 cut(s) 182, 214, 271
HapII CCGG 2 cut(s) 17, 242
HindIII AAGCTT 1 cut(s) 81
HinfI GANTC 3 cut(s) 98, 257, 396
HpaII CCGG 2 cut(s) 17, 242
HphI GGTGA 2 cut(s) 61, 268
Hpy166II GTNNAC 2 cut(s) 102, 467
Hpy188I TCNGA 2 cut(s) 337, 436
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 2 cut(s) 102, 467
HpyAV CCTTC 3 cut(s) 61, 128, 161
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 4 cut(s) 191, 206, 409, 467
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 188, 447
HpyF3I CTNAG 3 cut(s) 36, 60, 265
HpySE526I ACGT 1 cut(s) 353
LmnI GCTCC 1 cut(s) 425
LpnPI CCDG 8 cut(s) 30, 192, 252, 255, 285, 413, 416, 461
LweI GCATC 3 cut(s) 178, 291, 301
MaeI CTAG 3 cut(s) 30, 225, 306
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 2 cut(s) 49, 274
MboII GAAGA 4 cut(s) 86, 102, 309, 350
MhlI GDGCHC 2 cut(s) 459, 469
MluCI AATT 1 cut(s) 411
MlyI GAGTC 3 cut(s) 107, 251, 405
MnlI CCTC 6 cut(s) 55, 64, 118, 194, 204, 433
MspI CCGG 2 cut(s) 17, 242
MspR9I CCNGG 1 cut(s) 17
MwoI GCNNNNNNNGC 3 cut(s) 89, 188, 447
NciI CCSGG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 421
NmuCI GTSAC 2 cut(s) 49, 274
PleI GAGTC 3 cut(s) 106, 251, 404
PpsI GAGTC 3 cut(s) 106, 251, 404
Psp124BI GAGCTC 1 cut(s) 459
PspEI GGTNACC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 421
PspPI GGNCC 2 cut(s) 181, 269
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SacI GAGCTC 1 cut(s) 459
Sau96I GGNCC 2 cut(s) 181, 269
SchI GAGTC 3 cut(s) 107, 251, 405
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 2 cut(s) 459, 469
SetI ASST 8 cut(s) 31, 56, 85, 110, 139, 356, 459, 484
SfaNI GCATC 3 cut(s) 178, 291, 301
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 1 cut(s) 411
SsiI CCGC 1 cut(s) 280
SspMI CTAG 3 cut(s) 30, 225, 306
SstI GAGCTC 1 cut(s) 459
StyD4I CCNGG 1 cut(s) 15
TaiI ACGT 1 cut(s) 356
TaqI TCGA 3 cut(s) 147, 186, 459
TasI AATT 1 cut(s) 411
TscAI CASTG 4 cut(s) 40, 93, 327, 448
TseFI GTSAC 2 cut(s) 49, 274
Tsp45I GTSAC 2 cut(s) 49, 274
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 4 cut(s) 40, 93, 327, 448
VneI GTGCAC 1 cut(s) 465
XspI CTAG 3 cut(s) 30, 225, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.