Rh2BG515900

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000949
Physical Location & Seq
Forward (+)
72452307 .. 72464664
12358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG515900.1

Sequence Viewer

Length: 612 bp
ATGGTTGGCACTGTCCCAGTCTATCTACCTAACACTGAGAGTGTGATGGTGACCTCTATTGAGGAGAAGGATGAGGACGAAGCTTCAGTGGCTCAAGAGCCCACCACCTCTTCACAAAGAGTTATCATACGGGAAGGTCAAAACATCGACCCAAAGCAAATAGCTGAAGGGGTAATCAAGGCCCTCGATGCACCATCAAAGCATGCAGGGAGGCCAAAGGGGGCTAGAAACAAAGAGTATCCGGTTTTCAAAGATGACTCATACTCAGGGCCAGTCACCCGCAACAAGACTCACAAAATAATGTCTAGAGATGCTTCTTCAGTGGGTACCGCATCAGAAGATGAGGGGCAGACGTGGAAAGATAATCCACTCTATGAGATATCTGTAAAAGAAAGTGTCTCCCAGCTGCAAACTGACGGCTCCTCACAGGGTTCAGAAAGCAATGAAAGTAGAGAGCCCGATGGTGCACAAGTGCTGGTAGCTAACCCGCAAAGCCCAGAAGAGCAGATGCAAGAGTTGCAGAGAAGCCCTGAAAATCCAAATGTTCAACGTTGGCGACATCGTCGCCAAGACAATGGTTTCAATGAAGCAGATCCTATGACATTCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

203

Amino Acids

22.51

Weight (kDa)

4.82

Isoelectric Point (pI)

70.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 326
AccB1I GGYRCC 1 cut(s) 326
AciI CCGC 3 cut(s) 280, 330, 488
AclI AACGTT 1 cut(s) 550
AclWI GGATC 1 cut(s) 587
AcuI CTGAAG 3 cut(s) 69, 186, 303
AfaI GTAC 1 cut(s) 328
AgsI TTSAA 3 cut(s) 250, 548, 583
AjiI CACGTC 1 cut(s) 354
AluBI AGCT 4 cut(s) 83, 164, 406, 482
AluI AGCT 4 cut(s) 83, 164, 406, 482
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 1 cut(s) 403
Alw44I GTGCAC 1 cut(s) 465
AlwI GGATC 1 cut(s) 587
AoxI GGCC 3 cut(s) 180, 212, 269
ApaLI GTGCAC 1 cut(s) 465
ApeKI GCWGC 1 cut(s) 406
Asp718I GGTACC 1 cut(s) 326
AspS9I GGNCC 2 cut(s) 181, 269
AsuHPI GGTGA 2 cut(s) 61, 268
BaeGI GKGCMC 1 cut(s) 469
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 2 cut(s) 102, 459
Bbv12I GWGCWC 1 cut(s) 469
BbvI GCAGC 1 cut(s) 393
BccI CCATC 3 cut(s) 40, 202, 455
BceAI ACGGC 1 cut(s) 433
BciVI GTATCC 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 403
BfaI CTAG 2 cut(s) 225, 306
BfuI GTATCC 1 cut(s) 249
BisI GCNGC 1 cut(s) 407
BlsI GCNGC 1 cut(s) 408
BmgBI CACGTC 1 cut(s) 354
BmgT120I GGNCC 2 cut(s) 181, 269
BmiI GGNNCC 2 cut(s) 328, 421
BmrI ACTGGG 1 cut(s) 11
BmsI GCATC 4 cut(s) 178, 301, 341, 498
BmuI ACTGGG 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 241
Bse1I ACTGG 2 cut(s) 17, 272
Bse3DI GCAATG 1 cut(s) 448
BseGI GGATG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 448
BseMII CTCAG 2 cut(s) 27, 279
BseNI ACTGG 2 cut(s) 17, 272
BseRI GAGGAG 2 cut(s) 77, 412
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 1 cut(s) 393
BseYI CCCAGC 1 cut(s) 402
BshFI GGCC 3 cut(s) 182, 214, 271
BshNI GGYRCC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 469
BsiSI CCGG 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 403
BsnI GGCC 3 cut(s) 182, 214, 271
Bsp1286I GDGCHC 3 cut(s) 102, 459, 469
Bsp143I GATC 1 cut(s) 592
BspACI CCGC 3 cut(s) 280, 330, 488
BspANI GGCC 3 cut(s) 182, 214, 271
BspCNI CTCAG 2 cut(s) 28, 278
BspLI GGNNCC 2 cut(s) 328, 421
BspPI GGATC 1 cut(s) 587
BspQI GCTCTTC 1 cut(s) 495
BspT107I GGYRCC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 448
BsrI ACTGG 2 cut(s) 17, 272
BssMI GATC 1 cut(s) 592
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 2 cut(s) 115, 495
BstAPI GCANNNNNTGC 1 cut(s) 517
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 3 cut(s) 36, 265, 609
BstEII GGTNACC 1 cut(s) 49
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 1 cut(s) 595
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 1 cut(s) 592
BstMWI GCNNNNNNNGC 3 cut(s) 89, 188, 517
BstNSI RCATGY 1 cut(s) 206
BstPI GGTNACC 1 cut(s) 49
BstSLI GKGCMC 1 cut(s) 469
BstV1I GCAGC 1 cut(s) 393
BstX2I RGATCY 1 cut(s) 592
BstXI CCANNNNNNTGG 1 cut(s) 575
BstYI RGATCY 1 cut(s) 592
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 3 cut(s) 182, 214, 271
BtrI CACGTC 1 cut(s) 354
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 4 cut(s) 9, 33, 93, 327
Cac8I GCNNGC 1 cut(s) 204
Cfr13I GGNCC 2 cut(s) 181, 269
Csp6I GTAC 1 cut(s) 327
CviAII CATG 1 cut(s) 203
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 3 cut(s) 36, 265, 609
DpnI GATC 1 cut(s) 594
DpnII GATC 1 cut(s) 592
Eam1104I CTCTTC 2 cut(s) 115, 495
EarI CTCTTC 2 cut(s) 115, 495
Eco24I GRGCYC 2 cut(s) 102, 459
Eco32I GATATC 1 cut(s) 381
Eco57I CTGAAG 3 cut(s) 69, 186, 303
Eco91I GGTNACC 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 49
EcoRV GATATC 1 cut(s) 381
EcoT38I GRGCYC 2 cut(s) 102, 459
FaeI CATG 1 cut(s) 206
FaiI YATR 5 cut(s) 128, 204, 262, 375, 599
FatI CATG 1 cut(s) 202
FauI CCCGC 2 cut(s) 287, 495
Fnu4HI GCNGC 1 cut(s) 407
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 2 cut(s) 102, 459
Fsp4HI GCNGC 1 cut(s) 407
FspBI CTAG 2 cut(s) 225, 306
GluI GCNGC 1 cut(s) 407
GsaI CCCAGC 1 cut(s) 406
HaeIII GGCC 3 cut(s) 182, 214, 271
HapII CCGG 1 cut(s) 242
Hin1II CATG 1 cut(s) 206
HindIII AAGCTT 1 cut(s) 81
HinfI GANTC 2 cut(s) 257, 289
HpaII CCGG 1 cut(s) 242
HphI GGTGA 2 cut(s) 61, 268
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 2 cut(s) 337, 436
Hpy188III TCNNGA 2 cut(s) 95, 306
Hpy8I GTNNAC 1 cut(s) 467
Hpy99I CGWCG 1 cut(s) 567
HpyAV CCTTC 3 cut(s) 61, 128, 161
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 2 cut(s) 353, 550
HpyCH4V TGCA 6 cut(s) 191, 206, 409, 467, 511, 520
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 188, 517
HpyF3I CTNAG 3 cut(s) 36, 265, 609
HpySE526I ACGT 2 cut(s) 353, 550
Hsp92II CATG 1 cut(s) 206
KpnI GGTACC 1 cut(s) 330
Kzo9I GATC 1 cut(s) 592
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 1 cut(s) 393
LweI GCATC 4 cut(s) 178, 301, 341, 498
MaeI CTAG 2 cut(s) 225, 306
MaeII ACGT 2 cut(s) 353, 550
MaeIII GTNAC 2 cut(s) 49, 274
MalI GATC 1 cut(s) 594
MboI GATC 1 cut(s) 592
MboII GAAGA 4 cut(s) 102, 309, 350, 512
MflI RGATCY 1 cut(s) 592
MhlI GDGCHC 3 cut(s) 102, 459, 469
MlyI GAGTC 2 cut(s) 251, 283
MnlI CCTC 8 cut(s) 55, 64, 67, 118, 194, 204, 337, 433
MspA1I CMGCKG 1 cut(s) 406
MspI CCGG 1 cut(s) 242
MwoI GCNNNNNNNGC 3 cut(s) 89, 188, 517
NdeII GATC 1 cut(s) 592
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 2 cut(s) 328, 421
NmuCI GTSAC 2 cut(s) 49, 274
NspI RCATGY 1 cut(s) 206
PaeI GCATGC 1 cut(s) 206
PciSI GCTCTTC 1 cut(s) 495
PflFI GACNNNGTC 1 cut(s) 561
PkrI GCNGC 1 cut(s) 408
PleI GAGTC 2 cut(s) 251, 283
PpsI GAGTC 2 cut(s) 251, 283
Psp1406I AACGTT 1 cut(s) 550
PspEI GGTNACC 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 402
PspN4I GGNNCC 2 cut(s) 328, 421
PspPI GGNCC 2 cut(s) 181, 269
PsuI RGATCY 1 cut(s) 592
PsyI GACNNNGTC 1 cut(s) 561
PvuII CAGCTG 1 cut(s) 406
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SapI GCTCTTC 1 cut(s) 495
SatI GCNGC 1 cut(s) 407
Sau3AI GATC 1 cut(s) 592
Sau96I GGNCC 2 cut(s) 181, 269
SchI GAGTC 2 cut(s) 251, 283
SduI GDGCHC 3 cut(s) 102, 459, 469
SfaNI GCATC 4 cut(s) 178, 301, 341, 498
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
SphI GCATGC 1 cut(s) 206
SsiI CCGC 3 cut(s) 280, 330, 488
SspMI CTAG 2 cut(s) 225, 306
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 2 cut(s) 356, 553
TaqI TCGA 2 cut(s) 147, 186
TscAI CASTG 4 cut(s) 16, 40, 93, 327
TseFI GTSAC 2 cut(s) 49, 274
TseI GCWGC 1 cut(s) 406
Tsp45I GTSAC 2 cut(s) 49, 274
TspDTI ATGAA 2 cut(s) 459, 600
TspRI CASTG 4 cut(s) 16, 40, 93, 327
Tth111I GACNNNGTC 1 cut(s) 561
VneI GTGCAC 1 cut(s) 465
XbaI TCTAGA 1 cut(s) 305
XceI RCATGY 1 cut(s) 206
XspI CTAG 2 cut(s) 225, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.