Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004915.1

Orthogroup ID

OG0000949

Physical Location & Seq

Genomic Coordinates Reverse (-)

80583 .. 81694

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004915.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atggcaccacaagtaactgtgttcttccacaagcgcctagcaaccgacgacaatgccaaaaggaccggtcaccacatgtctttcgtacttagccatgcaccgaggaaaagagccaccaaggctcaaagaaagagggatgctgaggccaagacaattgaggccattctggcagaaattgctcatttgacgccgtccgtgtctgaaactgctaaggtccctaagactcttctagccaccaagagccacatgccagcccatttcgtggttggcactatctcggtgtacctacctagcaccgagaatgtgatggtgacctttactgaggaggagaatgaagatggggttttagtgactcaagagtccaccacttcttcacaacaagttatcattgacccaaagcaaatagctgaaggtgtagtcaaggctctcaatgcaccagcgaagcgtgcagggaggccaaagggggccaaaaacaaagaatacccgattttcagagacgattcttactcagggccaattacctgcaacaaggcccacaaaatgacgcctagagataccttttcagtgggtactgcctcagaagatgaggggcaaatgtggaaagacaatcctctttatgaaacatctgtaatagaaagggtgtcccaaccgcgaaggtcacaaattgatggctttccacagggttcagaaagcagtgaaagcaaagagctcgatggtgcacaagtgttggtagctaacccacaaagccgagaagagcagatgcaagagttgcagagaaggctagctcaacttgagtttgaggcgatccggaggcaggaagagaaggccaagaggctcgctgaaatagaagcagcagcagccaaaaaattagaagaaaaggaggttgaagtagttgcattggtagcacaactagcccttatggctaatgacaaaggcaagaacaaggacacaacatatcagttttcagaacggaaacatgaggaaagagcaagttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

332

Amino Acids

36.99

Weight (kDa)

7.15

Isoelectric Point (pI)

60.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16861 FvH4_3g30530 FvH4_4g10331
prunus_persica	Prupe.2G142600_v2.0.a1 Prupe.5G153300_v2.0.a1
pyrus_communis	pycom11g20890
rosa_chinensis	RchiOBHm_Chr1g0344221 RchiOBHm_Chr2g0147381 RchiOBHm_Chr2g0154091 RchiOBHm_Chr4g0394431 RchiOBHm_Chr4g0421521 RchiOBHm_Chr6g0274071 RchiOBHm_Chr6g0277071
rosa_laevigata	RLG00000014255
rosa_multiflora	Rmu_co8240637.1_g000001 Rmu_co8485309.1_g000002 Rmu_sc0000455.1_g000055 Rmu_sc0001846.1_g000005 Rmu_sc0002281.1_g000023 Rmu_sc0002772.1_g000021 Rmu_sc0003316.1_g000009 Rmu_sc0004915.1_g000013 Rmu_sc0005465.1_g000001 Rmu_sc0007612.1_g000028 Rmu_sc0009481.1_g000011 Rmu_sc0011709.1_g000004 Rmu_sc0012179.1_g000003 Rmu_sc0014556.1_g000001 Rmu_sc0018308.1_g000001 Rmu_sc0033766.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021100 Rroxscaffold_2G00111780 Rroxscaffold_3G00254520 Rroxscaffold_4G00318760 Rroxscaffold_4G00318770 Rroxscaffold_5G00364750 Rroxscaffold_5G00377430 Rroxscaffold_6G00423030 Rroxscaffold_7G00203610 Rroxscaffold_7G00203960
rosa_rugosa	Rorug01G0056200 Rorug07G0209200
rosa_samantha	Rh1AG072800 Rh1BG059400 Rh1BG092000 Rh1CG071900 Rh2BG331300 Rh2BG512600 Rh2BG515900 Rh2BG517600 Rh2DG120700 Rh2DG420800 Rh2DG433100 Rh2DG524200 Rh2DG529300 Rh4AG003200 Rh4BG121400 Rh4CG032100 Rh4CG052300 Rh5BG244400 Rh5CG363100 Rh6AG117400 Rh7BG296900 Rh7BG452300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	358
Acc36I	ACCTGC	1 cut(s)	530
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccII	CGCG	1 cut(s)	652
AccIII	TCCGGA	1 cut(s)	807
AciI	CCGC	1 cut(s)	650
AclWI	GGATC	1 cut(s)	799
AcuI	CTGAAG	1 cut(s)	429
AcyI	GRCGYC	2 cut(s)	188, 545
AfaI	GTAC	3 cut(s)	87, 284, 571
AfiI	CCNNNNNNNGG	2 cut(s)	262, 814
AflIII	ACRYGT	1 cut(s)	75
AgeI	ACCGGT	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	887
AluBI	AGCT	4 cut(s)	407, 709, 734, 785
AluI	AGCT	4 cut(s)	407, 709, 734, 785
Alw21I	GWGCWC	2 cut(s)	711, 721
Alw26I	GTCTC	1 cut(s)	489
Alw44I	GTGCAC	1 cut(s)	717
AlwI	GGATC	1 cut(s)	799
Aor13HI	TCCGGA	1 cut(s)	807
AoxI	GGCC	7 cut(s)	144, 159, 455, 465, 512, 531, 825
ApaLI	GTGCAC	1 cut(s)	717
ApeKI	GCWGC	3 cut(s)	851, 854, 857
AsiGI	ACCGGT	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	5 cut(s)	63, 214, 465, 512, 532
AsuHPI	GGTGA	2 cut(s)	62, 322
AsuNHI	GCTAGC	1 cut(s)	781
AvaII	GGWCC	2 cut(s)	63, 214
BaeGI	GKGCMC	1 cut(s)	721
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	711
Bbv12I	GWGCWC	2 cut(s)	711, 721
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	863, 866, 869
BccI	CCATC	4 cut(s)	301, 332, 662, 707
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	4 cut(s)	35, 69, 691, 725
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	6 cut(s)	38, 230, 291, 549, 782, 911
BfoI	RGCGCY	1 cut(s)	37
BfuAI	ACCTGC	1 cut(s)	530
BglI	GCCNNNNNGGC	3 cut(s)	119, 167, 920
BisI	GCNGC	3 cut(s)	852, 855, 858
BlsI	GCNGC	3 cut(s)	853, 856, 859
Bme18I	GGWCC	2 cut(s)	63, 214
BmgT120I	GGNCC	5 cut(s)	63, 214, 465, 512, 532
BmiI	GGNNCC	3 cut(s)	6, 216, 466
BmsI	GCATC	2 cut(s)	127, 750
BmtI	GCTAGC	1 cut(s)	785
Bpu10I	CCTNAGC	2 cut(s)	141, 210
BpuEI	CTTGAG	2 cut(s)	339, 812
BsaHI	GRCGYC	2 cut(s)	188, 545
BsaJI	CCNNGG	2 cut(s)	101, 117
BsaWI	WCCGGW	2 cut(s)	65, 807
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 814
Bse118I	RCCGGY	1 cut(s)	65
BseAI	TCCGGA	1 cut(s)	807
BseDI	CCNNGG	2 cut(s)	101, 117
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	262, 814
BseMII	CTCAG	4 cut(s)	132, 312, 522, 591
BseRI	GAGGAG	2 cut(s)	338, 341
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	3 cut(s)	863, 866, 869
BsgI	GTGCAG	1 cut(s)	468
Bsh1236I	CGCG	1 cut(s)	652
BshFI	GGCC	7 cut(s)	146, 161, 457, 467, 514, 533, 827
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	65
BsiHKAI	GWGCWC	2 cut(s)	711, 721
BsiSI	CCGG	2 cut(s)	66, 808
BslFI	GGGAC	2 cut(s)	200, 628
BslI	CCNNNNNNNGG	2 cut(s)	262, 814
BsmAI	GTCTC	1 cut(s)	489
BsmBI	CGTCTC	1 cut(s)	489
BsmFI	GGGAC	2 cut(s)	200, 628
BsnI	GGCC	7 cut(s)	146, 161, 457, 467, 514, 533, 827
Bsp1286I	GDGCHC	2 cut(s)	711, 721
Bsp13I	TCCGGA	1 cut(s)	807
Bsp143I	GATC	1 cut(s)	804
BspACI	CCGC	1 cut(s)	650
BspANI	GGCC	7 cut(s)	146, 161, 457, 467, 514, 533, 827
BspCNI	CTCAG	4 cut(s)	133, 313, 521, 590
BspEI	TCCGGA	1 cut(s)	807
BspFNI	CGCG	1 cut(s)	652
BspLI	GGNNCC	3 cut(s)	6, 216, 466
BspMI	ACCTGC	1 cut(s)	530
BspOI	GCTAGC	1 cut(s)	785
BspPI	GGATC	1 cut(s)	799
BspQI	GCTCTTC	1 cut(s)	747
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	101, 117
BssMI	GATC	1 cut(s)	804
BssNI	GRCGYC	2 cut(s)	188, 545
BssT1I	CCWWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	3 cut(s)	231, 747, 813
BstACI	GRCGYC	2 cut(s)	188, 545
BstAPI	GCANNNNNTGC	2 cut(s)	176, 769
BstC8I	GCNNGC	4 cut(s)	252, 447, 783, 837
BstDEI	CTNAG	7 cut(s)	89, 141, 210, 219, 321, 508, 577
BstEII	GGTNACC	2 cut(s)	68, 310
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	652
BstH2I	RGCGCY	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	1 cut(s)	807
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	1 cut(s)	804
BstNSI	RCATGY	2 cut(s)	79, 250
BstPI	GGTNACC	2 cut(s)	68, 310
BstSLI	GKGCMC	1 cut(s)	721
BstUI	CGCG	1 cut(s)	652
BstV1I	GCAGC	3 cut(s)	863, 866, 869
BsuRI	GGCC	7 cut(s)	146, 161, 457, 467, 514, 533, 827
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	700
BtsIMutI	CAGTG	2 cut(s)	570, 700
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	4 cut(s)	252, 447, 783, 837
CfoI	GCGC	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	5 cut(s)	63, 214, 465, 512, 532
CseI	GACGC	2 cut(s)	196, 553
Csp6I	GTAC	3 cut(s)	86, 283, 570
CspAI	ACCGGT	1 cut(s)	65
CviAII	CATG	4 cut(s)	76, 95, 247, 977
CviQI	GTAC	3 cut(s)	86, 283, 570
DdeI	CTNAG	7 cut(s)	89, 141, 210, 219, 321, 508, 577
DpnI	GATC	1 cut(s)	806
DpnII	GATC	1 cut(s)	804
DrdI	GACNNNNNNGTC	1 cut(s)	358
DseDI	GACNNNNNNGTC	1 cut(s)	358
Eam1104I	CTCTTC	3 cut(s)	231, 747, 813
EarI	CTCTTC	3 cut(s)	231, 747, 813
Ecl136II	GAGCTC	1 cut(s)	709
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	711
Eco47I	GGWCC	2 cut(s)	63, 214
Eco53kI	GAGCTC	1 cut(s)	709
Eco57I	CTGAAG	1 cut(s)	429
Eco91I	GGTNACC	2 cut(s)	68, 310
EcoICRI	GAGCTC	1 cut(s)	709
EcoO109I	RGGNCCY	1 cut(s)	214
EcoO65I	GGTNACC	2 cut(s)	68, 310
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	711
ErhI	CCWWGG	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	489
FaeI	CATG	4 cut(s)	79, 98, 250, 980
FaiI	YATR	7 cut(s)	77, 96, 248, 618, 920, 955, 978
FaqI	GGGAC	2 cut(s)	200, 628
FatI	CATG	4 cut(s)	75, 94, 246, 976
Fnu4HI	GCNGC	3 cut(s)	852, 855, 858
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	711
Fsp4HI	GCNGC	3 cut(s)	852, 855, 858
FspBI	CTAG	6 cut(s)	38, 230, 291, 549, 782, 911
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	3 cut(s)	852, 855, 858
HaeII	RGCGCY	1 cut(s)	37
HaeIII	GGCC	7 cut(s)	146, 161, 457, 467, 514, 533, 827
HapII	CCGG	2 cut(s)	66, 808
HgaI	GACGC	2 cut(s)	196, 553
HhaI	GCGC	1 cut(s)	36
Hin1I	GRCGYC	2 cut(s)	188, 545
Hin1II	CATG	4 cut(s)	79, 98, 250, 980
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	4 cut(s)	223, 352, 359, 500
HpaII	CCGG	2 cut(s)	66, 808
HphI	GGTGA	2 cut(s)	62, 322
Hpy166II	GTNNAC	3 cut(s)	283, 363, 719
Hpy188I	TCNGA	5 cut(s)	202, 494, 580, 688, 967
Hpy188III	TCNNGA	2 cut(s)	356, 808
Hpy8I	GTNNAC	3 cut(s)	283, 363, 719
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	4 cut(s)	404, 648, 771, 817
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	8 cut(s)	98, 434, 449, 525, 719, 763, 772, 896
HpyF3I	CTNAG	7 cut(s)	89, 141, 210, 219, 321, 508, 577
Hsp92I	GRCGYC	2 cut(s)	188, 545
Hsp92II	CATG	4 cut(s)	79, 98, 250, 980
HspAI	GCGC	1 cut(s)	34
Kpn2I	TCCGGA	1 cut(s)	807
Kzo9I	GATC	1 cut(s)	804
LguI	GCTCTTC	1 cut(s)	747
Lsp1109I	GCAGC	3 cut(s)	863, 866, 869
LweI	GCATC	2 cut(s)	127, 750
MaeI	CTAG	6 cut(s)	38, 230, 291, 549, 782, 911
MaeIII	GTNAC	5 cut(s)	13, 68, 310, 349, 657
MalI	GATC	1 cut(s)	806
MboI	GATC	1 cut(s)	804
MboII	GAAGA	8 cut(s)	16, 218, 347, 363, 593, 764, 830, 884
MfeI	CAATTG	1 cut(s)	153
MhlI	GDGCHC	2 cut(s)	711, 721
MluCI	AATT	5 cut(s)	153, 174, 516, 663, 866
MlyI	GAGTC	3 cut(s)	217, 346, 368
MroI	TCCGGA	1 cut(s)	807
MseI	TTAA	1 cut(s)	997
MspI	CCGG	2 cut(s)	66, 808
MunI	CAATTG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	652
NdeII	GATC	1 cut(s)	804
NheI	GCTAGC	1 cut(s)	781
NlaIII	CATG	4 cut(s)	79, 98, 250, 980
NlaIV	GGNNCC	3 cut(s)	6, 216, 466
NmeAIII	GCCGAG	1 cut(s)	773
NmuCI	GTSAC	4 cut(s)	68, 310, 349, 657
NspI	RCATGY	2 cut(s)	79, 250
PciI	ACATGT	1 cut(s)	75
PciSI	GCTCTTC	1 cut(s)	747
PfeI	GAWTC	1 cut(s)	500
PflFI	GACNNNGTC	1 cut(s)	190
PflMI	CCANNNNNTGG	1 cut(s)	262
PinAI	ACCGGT	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	853, 856, 859
PleI	GAGTC	3 cut(s)	217, 346, 367
PpsI	GAGTC	3 cut(s)	217, 346, 367
PpuMI	RGGWCCY	1 cut(s)	214
PscI	ACATGT	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	711
Psp5II	RGGWCCY	1 cut(s)	214
PspEI	GGTNACC	2 cut(s)	68, 310
PspN4I	GGNNCC	3 cut(s)	6, 216, 466
PspPI	GGNCC	5 cut(s)	63, 214, 465, 512, 532
PspPPI	RGGWCCY	1 cut(s)	214
PsyI	GACNNNGTC	1 cut(s)	190
RsaI	GTAC	3 cut(s)	87, 284, 571
RsaNI	GTAC	3 cut(s)	86, 283, 570
SacI	GAGCTC	1 cut(s)	711
SapI	GCTCTTC	1 cut(s)	747
SaqAI	TTAA	1 cut(s)	997
SatI	GCNGC	3 cut(s)	852, 855, 858
Sau3AI	GATC	1 cut(s)	804
Sau96I	GGNCC	5 cut(s)	63, 214, 465, 512, 532
SchI	GAGTC	3 cut(s)	217, 346, 368
SduI	GDGCHC	2 cut(s)	711, 721
SfaNI	GCATC	2 cut(s)	127, 750
SinI	GGWCC	2 cut(s)	63, 214
SmlI	CTYRAG	2 cut(s)	354, 791
SmoI	CTYRAG	2 cut(s)	354, 791
Sse9I	AATT	5 cut(s)	153, 174, 516, 663, 866
SsiI	CCGC	1 cut(s)	650
SspMI	CTAG	6 cut(s)	38, 230, 291, 549, 782, 911
SstI	GAGCTC	1 cut(s)	711
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	711
TasI	AATT	5 cut(s)	153, 174, 516, 663, 866
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	1 cut(s)	997
Tru9I	TTAA	1 cut(s)	997
TscAI	CASTG	2 cut(s)	570, 700
TseFI	GTSAC	4 cut(s)	68, 310, 349, 657
TseI	GCWGC	3 cut(s)	851, 854, 857
Tsp45I	GTSAC	4 cut(s)	68, 310, 349, 657
TspDTI	ATGAA	2 cut(s)	348, 633
TspGWI	ACGGA	2 cut(s)	184, 985
TspRI	CASTG	2 cut(s)	570, 700
Tth111I	GACNNNGTC	1 cut(s)	190
Van91I	CCANNNNNTGG	1 cut(s)	262
VneI	GTGCAC	1 cut(s)	717
VpaK11BI	GGWCC	2 cut(s)	63, 214
XceI	RCATGY	2 cut(s)	79, 250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263
XspI	CTAG	6 cut(s)	38, 230, 291, 549, 782, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.