RchiOBHm_Chr6g0274071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000949
Physical Location & Seq
Reverse (-)
35253515 .. 35253757
243 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24588

Sequence Viewer

Length: 183 bp
ATGTTGTGGTGGCATCTTGGCAAGGGCGGAAAGGTGGCTTCCCGACGTCGGATTTGCGACTTCCGGATACCGTGGCGTAGCTTGAACATAGGGCTACACGATGCATGTCTCGGTTGGGCCTCACCATGGCTTGTGTATGTCCCAAAGAGGGTGTTACTTATGCTTGGTGATGGAGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.95

Weight (kDa)

10.04

Isoelectric Point (pI)

77.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 49
AccIII TCCGGA 1 cut(s) 63
AciI CCGC 1 cut(s) 27
AcyI GRCGYC 1 cut(s) 46
AfiI CCNNNNNNNGG 3 cut(s) 48, 126, 148
AgsI TTSAA 1 cut(s) 85
AluBI AGCT 1 cut(s) 81
AluI AGCT 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 113
Aor13HI TCCGGA 1 cut(s) 63
AoxI GGCC 1 cut(s) 117
ArsI GACNNNNNNTTYG 2 cut(s) 36, 68
AspS9I GGNCC 1 cut(s) 117
AsuHPI GGTGA 2 cut(s) 114, 179
BccI CCATC 1 cut(s) 164
BciVI GTATCC 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 1 cut(s) 181
BfuI GTATCC 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 117
BmsI GCATC 2 cut(s) 22, 91
BsaHI GRCGYC 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 71, 125
BsaWI WCCGGW 1 cut(s) 63
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 126, 148
BseAI TCCGGA 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 71, 125
BseLI CCNNNNNNNGG 3 cut(s) 48, 126, 148
BshFI GGCC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 64
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 3 cut(s) 48, 126, 148
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 1 cut(s) 119
Bsp13I TCCGGA 1 cut(s) 63
Bsp19I CCATGG 1 cut(s) 125
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 119
BspEI TCCGGA 1 cut(s) 63
BssECI CCNNGG 2 cut(s) 71, 125
BssNI GRCGYC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 46
BstDSI CCRYGG 2 cut(s) 71, 125
BstMAI GTCTC 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 108
BsuI GTATCC 1 cut(s) 60
BsuRI GGCC 1 cut(s) 119
BtgI CCRYGG 2 cut(s) 71, 125
Cfr13I GGNCC 1 cut(s) 117
CviAII CATG 2 cut(s) 105, 126
CviJI RGCY 5 cut(s) 38, 81, 94, 119, 130
CviKI_1 RGCY 5 cut(s) 38, 81, 94, 119, 130
EciI GGCGGA 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 125
EcoT22I ATGCAT 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 2 cut(s) 108, 129
FaiI YATR 5 cut(s) 89, 106, 127, 138, 161
FaqI GGGAC 1 cut(s) 125
FatI CATG 2 cut(s) 104, 125
FspBI CTAG 1 cut(s) 181
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 46
Hin1II CATG 2 cut(s) 108, 129
HpaII CCGG 1 cut(s) 64
HphI GGTGA 2 cut(s) 114, 179
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 2 cut(s) 42, 64
Hpy99I CGWCG 2 cut(s) 48, 51
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 46
Hsp92I GRCGYC 1 cut(s) 46
Hsp92II CATG 2 cut(s) 108, 129
Kpn2I TCCGGA 1 cut(s) 63
LpnPI CCDG 1 cut(s) 77
LweI GCATC 2 cut(s) 22, 91
MaeI CTAG 1 cut(s) 181
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 29
MnlI CCTC 2 cut(s) 130, 141
Mph1103I ATGCAT 1 cut(s) 106
MroI TCCGGA 1 cut(s) 63
MspI CCGG 1 cut(s) 64
NcoI CCATGG 1 cut(s) 125
NlaIII CATG 2 cut(s) 108, 129
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 1 cut(s) 108
PspPI GGNCC 1 cut(s) 117
Sau96I GGNCC 1 cut(s) 117
SetI ASST 3 cut(s) 36, 49, 83
SfaNI GCATC 2 cut(s) 22, 91
SsiI CCGC 1 cut(s) 27
SspMI CTAG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 1 cut(s) 49
XceI RCATGY 1 cut(s) 108
XspI CTAG 1 cut(s) 181
ZraI GACGTC 1 cut(s) 47
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.