Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000949

Physical Location & Seq

Genomic Coordinates Forward (+)

19887510 .. 19887812

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G142600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCTTTATAAACCCTGCACTAGGTGCTTGACCCGCCGAGCTTTGTGCTTTGAGGTGCTGGAACATTGGCTCAGTATTAGCGGGTCGGGTTCAGGTTGGCTATCTACTGGTCCGCCCATTCCAAGCCAGGAATTGAACCCTGTGGCTCGAGCGAAGGCTCTGGGTCACTTGGTTTCTAGAGCGGAGGGAACCGCGCAAGGCTGGCTTAACAGAGCAACGACTACCTCCCGCTCTTGGCAGTGGAAGGATAACGGGTCGGTGGTCGCTTGGATCCATCATGGGTCGCTAGACTGTCCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.01

Weight (kDa)

9.2

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16861 FvH4_3g30530 FvH4_4g10331
prunus_persica	Prupe.2G142600_v2.0.a1 Prupe.5G153300_v2.0.a1
pyrus_communis	pycom11g20890
rosa_chinensis	RchiOBHm_Chr1g0344221 RchiOBHm_Chr2g0147381 RchiOBHm_Chr2g0154091 RchiOBHm_Chr4g0394431 RchiOBHm_Chr4g0421521 RchiOBHm_Chr6g0274071 RchiOBHm_Chr6g0277071
rosa_laevigata	RLG00000014255
rosa_multiflora	Rmu_co8240637.1_g000001 Rmu_co8485309.1_g000002 Rmu_sc0000455.1_g000055 Rmu_sc0001846.1_g000005 Rmu_sc0002281.1_g000023 Rmu_sc0002772.1_g000021 Rmu_sc0003316.1_g000009 Rmu_sc0004915.1_g000013 Rmu_sc0005465.1_g000001 Rmu_sc0007612.1_g000028 Rmu_sc0009481.1_g000011 Rmu_sc0011709.1_g000004 Rmu_sc0012179.1_g000003 Rmu_sc0014556.1_g000001 Rmu_sc0018308.1_g000001 Rmu_sc0033766.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021100 Rroxscaffold_2G00111780 Rroxscaffold_3G00254520 Rroxscaffold_4G00318760 Rroxscaffold_4G00318770 Rroxscaffold_5G00364750 Rroxscaffold_5G00377430 Rroxscaffold_6G00423030 Rroxscaffold_7G00203610 Rroxscaffold_7G00203960
rosa_rugosa	Rorug01G0056200 Rorug07G0209200
rosa_samantha	Rh1AG072800 Rh1BG059400 Rh1BG092000 Rh1CG071900 Rh2BG331300 Rh2BG512600 Rh2BG515900 Rh2BG517600 Rh2DG120700 Rh2DG420800 Rh2DG433100 Rh2DG524200 Rh2DG529300 Rh4AG003200 Rh4BG121400 Rh4CG032100 Rh4CG052300 Rh5BG244400 Rh5CG363100 Rh6AG117400 Rh7BG296900 Rh7BG452300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	9
AccBSI	CCGCTC	2 cut(s)	182, 231
AccII	CGCG	1 cut(s)	194
AciI	CCGC	6 cut(s)	34, 81, 113, 182, 192, 229
AclWI	GGATC	2 cut(s)	265, 278
AdeI	CACNNNGTG	1 cut(s)	24
AfiI	CCNNNNNNNGG	2 cut(s)	21, 234
AgsI	TTSAA	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
AlwI	GGATC	2 cut(s)	265, 278
Ama87I	CYCGRG	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	110
BamHI	GGATCC	1 cut(s)	270
BccI	CCATC	1 cut(s)	282
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BciT130I	CCWGG	1 cut(s)	128
BfaI	CTAG	3 cut(s)	21, 177, 287
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	2 cut(s)	190, 272
BmrFI	CCNGG	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 234
Bse1I	ACTGG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	128
BseLI	CCNNNNNNNGG	2 cut(s)	21, 234
BseMII	CTCAG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	112
Bsh1236I	CGCG	1 cut(s)	194
BsiHKCI	CYCGRG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	21, 234
BsmFI	GGGAC	1 cut(s)	279
BsoBI	CYCGRG	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	270
BspACI	CCGC	6 cut(s)	34, 81, 113, 182, 192, 229
BspCNI	CTCAG	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	2 cut(s)	190, 272
BspPI	GGATC	2 cut(s)	265, 278
BsrBI	CCGCTC	2 cut(s)	182, 231
BsrI	ACTGG	1 cut(s)	112
BssMI	GATC	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	293
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	71
BstENI	CCTNNNNNAGG	1 cut(s)	19
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 33, 202
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	203
CfoI	GCGC	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	110
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	8 cut(s)	41, 70, 100, 126, 146, 158, 201, 205
CviKI_1	RGCY	8 cut(s)	41, 70, 100, 126, 146, 158, 201, 205
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
DraIII	CACNNNGTG	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	147
EcoNI	CCTNNNNNAGG	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	281
FaiI	YATR	2 cut(s)	9, 279
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	1 cut(s)	277
FauI	CCCGC	3 cut(s)	41, 74, 236
FspBI	CTAG	3 cut(s)	21, 177, 287
GlaI	GCGC	1 cut(s)	195
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
Hpy188III	TCNNGA	1 cut(s)	177
HpyAV	CCTTC	2 cut(s)	148, 238
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4V	TGCA	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 33, 202
HpyF3I	CTNAG	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	1 cut(s)	270
LpnPI	CCDG	9 cut(s)	28, 44, 78, 93, 113, 140, 146, 153, 187
MaeI	CTAG	3 cut(s)	21, 177, 287
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	272
MbiI	CCGCTC	2 cut(s)	182, 231
MboI	GATC	1 cut(s)	270
MfeI	CAATTG	1 cut(s)	298
MflI	RGATCY	1 cut(s)	270
MluCI	AATT	2 cut(s)	131, 298
MnlI	CCTC	3 cut(s)	46, 178, 235
MseI	TTAA	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	24, 33, 202
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	2 cut(s)	190, 272
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	147
PsiI	TTATAA	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	190, 272
PspPI	GGNCC	1 cut(s)	110
PspXI	VCTCGAGB	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	5 cut(s)	26, 43, 57, 97, 227
Sfr274I	CTCGAG	1 cut(s)	147
SinI	GGWCC	1 cut(s)	110
SlaI	CTCGAG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
Sse9I	AATT	2 cut(s)	131, 298
SsiI	CCGC	6 cut(s)	34, 81, 113, 182, 192, 229
SspMI	CTAG	3 cut(s)	21, 177, 287
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	293
TaqI	TCGA	1 cut(s)	148
TasI	AATT	2 cut(s)	131, 298
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	245
TseFI	GTSAC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	164
TspRI	CASTG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	110
XagI	CCTNNNNNAGG	1 cut(s)	19
XbaI	TCTAGA	1 cut(s)	176
XhoI	CTCGAG	1 cut(s)	147
XspI	CTAG	3 cut(s)	21, 177, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.