FvH4_3g30530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000949
Physical Location & Seq
Forward (+)
23813999 .. 23817124
3126 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30530.t1

Sequence Viewer

Length: 495 bp
ATGTGGCTTGAGCGAAGGCTCTGGGTTACATGGTCCTTAGAGTGGAGGGCAATGCGTGAGGCTGGTTTCACAGAGCCAGCGACTACCTCCCGCTCCTTGCAGTGGAAGGATAACGGCAAAATGGTTTCCACATTGCTGTTTGGTTTCAGATATTTTGGGATTGAAGCAAAAGTGAGCTGCATTTGTGTGCTTGAACAAGAAGGGATCCCTCTTTTGCTTTGTCAGATTCTCATGTACCATTTTGTAGGAAACTACACAGATAGATGCTTGGATATCTTCTGCAGTCTTTCTGCTCAAGCCATGAGTTATGACAAATCCCTAGTTTATTGCTACCCTGATACAAGAAGAAGCATTACTACAGCCATTGGTCACCACGTGGTTCGCCTCCCACTGGCAATCTTGGAAACACTTGTGCTGGTTGTGGTGCTGTTGTTCAAAGTTGGGGAGGCTATTCTAATTGTTGCACTGTCAACCCGGATTCTAATAGTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.77

Weight (kDa)

8.24

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 93
AciI CCGC 1 cut(s) 91
AclWI GGATC 2 cut(s) 199, 212
AcvI CACGTG 1 cut(s) 376
AdeI CACNNNGTG 1 cut(s) 376
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 3 cut(s) 42, 102, 391
AgsI TTSAA 3 cut(s) 164, 194, 436
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
AlwI GGATC 2 cut(s) 199, 212
ApeKI GCWGC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 33
AsuC2I CCSGG 1 cut(s) 475
AsuHPI GGTGA 1 cut(s) 362
AvaII GGWCC 1 cut(s) 33
BamHI GGATCC 1 cut(s) 204
BarI GAAGNNNNNNTAC 4 cut(s) 337, 340, 369, 372
BbrPI CACGTG 1 cut(s) 376
BbvI GCAGC 1 cut(s) 164
BceAI ACGGC 1 cut(s) 130
BcnI CCSGG 1 cut(s) 475
BfaI CTAG 1 cut(s) 320
BfmI CTRYAG 2 cut(s) 280, 357
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 475
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 475
BmsI GCATC 1 cut(s) 254
BpuEI CTTGAG 2 cut(s) 29, 279
BpuMI CCSGG 1 cut(s) 475
BsaAI YACGTR 1 cut(s) 376
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 102, 391
Bse1I ACTGG 1 cut(s) 396
Bse3DI GCAATG 2 cut(s) 57, 131
BseLI CCNNNNNNNGG 3 cut(s) 42, 102, 391
BseMI GCAATG 2 cut(s) 57, 131
BseNI ACTGG 1 cut(s) 396
BseXI GCAGC 1 cut(s) 164
BsiSI CCGG 1 cut(s) 475
BslI CCNNNNNNNGG 3 cut(s) 42, 102, 391
Bsp143I GATC 1 cut(s) 204
BspACI CCGC 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 206
BspMAI CTGCAG 1 cut(s) 284
BspPI GGATC 2 cut(s) 199, 212
BsrBI CCGCTC 1 cut(s) 93
BsrDI GCAATG 2 cut(s) 57, 131
BsrI ACTGG 1 cut(s) 396
BssMI GATC 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 468
BstBAI YACGTR 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 37
BstEII GGTNACC 1 cut(s) 368
BstKTI GATC 1 cut(s) 207
BstMBI GATC 1 cut(s) 204
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 473
BstSFI CTRYAG 2 cut(s) 280, 357
BstV1I GCAGC 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 3 cut(s) 107, 389, 464
Cac8I GCNNGC 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 235
CviAII CATG 3 cut(s) 30, 232, 301
CviJI RGCY 8 cut(s) 7, 19, 62, 76, 177, 299, 362, 449
CviKI_1 RGCY 8 cut(s) 7, 19, 62, 76, 177, 299, 362, 449
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 37
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
DraIII CACNNNGTG 1 cut(s) 376
Eco32I GATATC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 33
Eco72I CACGTG 1 cut(s) 376
Eco91I GGTNACC 1 cut(s) 368
EcoO65I GGTNACC 1 cut(s) 368
EcoRV GATATC 1 cut(s) 274
FaeI CATG 3 cut(s) 33, 235, 304
FaiI YATR 4 cut(s) 31, 233, 302, 309
FatI CATG 3 cut(s) 29, 231, 300
FauI CCCGC 1 cut(s) 98
Fnu4HI GCNGC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 1 cut(s) 320
GluI GCNGC 1 cut(s) 178
HapII CCGG 1 cut(s) 475
Hin1II CATG 3 cut(s) 33, 235, 304
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HinfI GANTC 2 cut(s) 226, 478
HpaII CCGG 1 cut(s) 475
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 2 cut(s) 149, 225
Hpy8I GTNNAC 1 cut(s) 471
HpyAV CCTTC 3 cut(s) 9, 100, 194
HpyCH4III ACNGT 1 cut(s) 468
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 4 cut(s) 100, 180, 282, 464
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 375
Hsp92II CATG 3 cut(s) 33, 235, 304
Kzo9I GATC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 7 cut(s) 7, 48, 90, 348, 377, 401, 488
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 254
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 2 cut(s) 25, 368
MalI GATC 1 cut(s) 206
MbiI CCGCTC 1 cut(s) 93
MboI GATC 1 cut(s) 204
MboII GAAGA 2 cut(s) 268, 357
MflI RGATCY 1 cut(s) 204
MluCI AATT 1 cut(s) 456
MnlI CCTC 6 cut(s) 39, 52, 97, 219, 395, 439
MslI CAYNNNNRTG 1 cut(s) 185
MspI CCGG 1 cut(s) 475
MspR9I CCNGG 1 cut(s) 475
NciI CCSGG 1 cut(s) 475
NdeII GATC 1 cut(s) 204
NlaIII CATG 3 cut(s) 33, 235, 304
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 368
PfeI GAWTC 2 cut(s) 226, 478
PkrI GCNGC 1 cut(s) 179
PmaCI CACGTG 1 cut(s) 376
PmlI CACGTG 1 cut(s) 376
Ppu21I YACGTR 1 cut(s) 376
PspCI CACGTG 1 cut(s) 376
PspEI GGTNACC 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 33
PstI CTGCAG 1 cut(s) 284
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 185
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 475
SetI ASST 3 cut(s) 89, 179, 378
SfaNI GCATC 1 cut(s) 254
SfcI CTRYAG 2 cut(s) 280, 357
SinI GGWCC 1 cut(s) 33
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 2 cut(s) 8, 294
SmoI CTYRAG 2 cut(s) 8, 294
Sse9I AATT 1 cut(s) 456
SsiI CCGC 1 cut(s) 91
SspMI CTAG 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 473
TaaI ACNGT 1 cut(s) 468
TaiI ACGT 1 cut(s) 378
TasI AATT 1 cut(s) 456
TfiI GAWTC 2 cut(s) 226, 478
TscAI CASTG 3 cut(s) 107, 396, 471
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 368
TspRI CASTG 3 cut(s) 107, 396, 471
VpaK11BI GGWCC 1 cut(s) 33
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.