Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000949

Physical Location & Seq

Genomic Coordinates Forward (+)

53003490 .. 53012292

Gene Structure 8803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00203960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTGGCTTGAGCGGAGGCTCTGGGCTTCATGGCTCCTAGAGAGGAGGGCAATGCGTGAGGCTGGTTTCACAGAGCAGCGATCACCTCCCTCTCTTTGCAGTGGAAGGATAACGGATTGGAGAAGGCCTGACTCGCCCATTTCGACCAAAAGTTCTAGCATAAGTGGAAAGAAACTAAGTCGGTGTCTTTCCGAGAAAAGGCCTATTATAGAGGCAACTTGGCAAGGCCGGGAAGGTGGCTTCCCGATGAGGTATTTGCCGCTTCGACTACCGTGGCGTAGCCTGAACATCGGGCTATGGGATGCATGTCGCGGTTGGGTCCCACCAAGGCTTATGGGCTGCCCTAAGAGGGTGTTGCTTATGCTTGGTGACATAGAAAATAGCCTTGCTAGTAGAGGTATCTATAAGTCCCCGAAGTTTCTAAGTAAGATGAGCTTCTTGGTTGGGGAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

151

Amino Acids

17.44

Weight (kDa)

10.67

Isoelectric Point (pI)

79.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16861 FvH4_3g30530 FvH4_4g10331
prunus_persica	Prupe.2G142600_v2.0.a1 Prupe.5G153300_v2.0.a1
pyrus_communis	pycom11g20890
rosa_chinensis	RchiOBHm_Chr1g0344221 RchiOBHm_Chr2g0147381 RchiOBHm_Chr2g0154091 RchiOBHm_Chr4g0394431 RchiOBHm_Chr4g0421521 RchiOBHm_Chr6g0274071 RchiOBHm_Chr6g0277071
rosa_laevigata	RLG00000014255
rosa_multiflora	Rmu_co8240637.1_g000001 Rmu_co8485309.1_g000002 Rmu_sc0000455.1_g000055 Rmu_sc0001846.1_g000005 Rmu_sc0002281.1_g000023 Rmu_sc0002772.1_g000021 Rmu_sc0003316.1_g000009 Rmu_sc0004915.1_g000013 Rmu_sc0005465.1_g000001 Rmu_sc0007612.1_g000028 Rmu_sc0009481.1_g000011 Rmu_sc0011709.1_g000004 Rmu_sc0012179.1_g000003 Rmu_sc0014556.1_g000001 Rmu_sc0018308.1_g000001 Rmu_sc0033766.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021100 Rroxscaffold_2G00111780 Rroxscaffold_3G00254520 Rroxscaffold_4G00318760 Rroxscaffold_4G00318770 Rroxscaffold_5G00364750 Rroxscaffold_5G00377430 Rroxscaffold_6G00423030 Rroxscaffold_7G00203610 Rroxscaffold_7G00203960
rosa_rugosa	Rorug01G0056200 Rorug07G0209200
rosa_samantha	Rh1AG072800 Rh1BG059400 Rh1BG092000 Rh1CG071900 Rh2BG331300 Rh2BG512600 Rh2BG515900 Rh2BG517600 Rh2DG120700 Rh2DG420800 Rh2DG433100 Rh2DG524200 Rh2DG529300 Rh4AG003200 Rh4BG121400 Rh4CG032100 Rh4CG052300 Rh5BG244400 Rh5CG363100 Rh6AG117400 Rh7BG296900 Rh7BG452300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	454
AccBSI	CCGCTC	1 cut(s)	13
AccII	CGCG	1 cut(s)	312
AciI	CCGC	3 cut(s)	13, 260, 312
AfiI	CCNNNNNNNGG	2 cut(s)	198, 349
AluBI	AGCT	1 cut(s)	435
AluI	AGCT	1 cut(s)	435
AoxI	GGCC	3 cut(s)	125, 200, 226
ApeKI	GCWGC	2 cut(s)	76, 339
AspS9I	GGNCC	1 cut(s)	319
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	75, 380
AvaII	GGWCC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	88, 326
BcnI	CCSGG	1 cut(s)	230
BfaI	CTAG	3 cut(s)	38, 156, 390
BisI	GCNGC	3 cut(s)	77, 260, 340
BlsI	GCNGC	3 cut(s)	78, 261, 341
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	3 cut(s)	35, 320, 321
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	272, 326
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 349
Bse3DI	GCAATG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	272, 326
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	2 cut(s)	198, 349
BseMI	GCAATG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	88, 326
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	3 cut(s)	127, 202, 228
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	2 cut(s)	305, 394
BslI	CCNNNNNNNGG	2 cut(s)	198, 349
BsmFI	GGGAC	2 cut(s)	305, 394
BsnI	GGCC	3 cut(s)	127, 202, 228
Bsp143I	GATC	1 cut(s)	80
BspACI	CCGC	3 cut(s)	13, 260, 312
BspANI	GGCC	3 cut(s)	127, 202, 228
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	3 cut(s)	35, 320, 321
BsrBI	CCGCTC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	272, 326
BssMI	GATC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	176, 345, 422
BstDSI	CCRYGG	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	312
BstKTI	GATC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	228
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	88, 326
BsuRI	GGCC	3 cut(s)	127, 202, 228
BtgI	CCRYGG	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	319
CviAII	CATG	2 cut(s)	30, 306
DdeI	CTNAG	3 cut(s)	176, 345, 422
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	326
Eco147I	AGGCCT	2 cut(s)	127, 202
Eco47I	GGWCC	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	326
EcoT22I	ATGCAT	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	2 cut(s)	33, 309
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FaqI	GGGAC	2 cut(s)	305, 394
FatI	CATG	2 cut(s)	29, 305
Fnu4HI	GCNGC	3 cut(s)	77, 260, 340
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	3 cut(s)	77, 260, 340
FspBI	CTAG	3 cut(s)	38, 156, 390
GluI	GCNGC	3 cut(s)	77, 260, 340
HaeIII	GGCC	3 cut(s)	127, 202, 228
HapII	CCGG	1 cut(s)	229
Hin1II	CATG	2 cut(s)	33, 309
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	2 cut(s)	75, 380
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	1 cut(s)	244
HpyAV	CCTTC	3 cut(s)	99, 117, 227
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	99, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	3 cut(s)	176, 345, 422
Hsp92II	CATG	2 cut(s)	33, 309
KflI	GGGWCCC	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	5 cut(s)	7, 48, 141, 242, 296
Lsp1109I	GCAGC	2 cut(s)	88, 326
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	3 cut(s)	38, 156, 390
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	1 cut(s)	82
MbiI	CCGCTC	1 cut(s)	13
MboI	GATC	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	125
Mph1103I	ATGCAT	1 cut(s)	307
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	230
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	1 cut(s)	80
NlaIII	CATG	2 cut(s)	33, 309
NlaIV	GGNNCC	3 cut(s)	35, 320, 321
NmuCI	GTSAC	1 cut(s)	368
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	1 cut(s)	309
PceI	AGGCCT	2 cut(s)	127, 202
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	78, 261, 341
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PpuMI	RGGWCCY	1 cut(s)	319
PsiI	TTATAA	1 cut(s)	454
Psp5II	RGGWCCY	1 cut(s)	319
PspN4I	GGNNCC	3 cut(s)	35, 320, 321
PspPI	GGNCC	1 cut(s)	319
PspPPI	RGGWCCY	1 cut(s)	319
SatI	GCNGC	3 cut(s)	77, 260, 340
Sau3AI	GATC	1 cut(s)	80
Sau96I	GGNCC	1 cut(s)	319
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	5 cut(s)	88, 238, 254, 400, 437
SfaNI	GCATC	1 cut(s)	292
SinI	GGWCC	1 cut(s)	319
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SseBI	AGGCCT	2 cut(s)	127, 202
SsiI	CCGC	3 cut(s)	13, 260, 312
SspMI	CTAG	3 cut(s)	38, 156, 390
StuI	AGGCCT	2 cut(s)	127, 202
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	273
TaqI	TCGA	2 cut(s)	143, 265
TauI	GCSGC	1 cut(s)	262
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	2 cut(s)	76, 339
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	18
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	319
XceI	RCATGY	1 cut(s)	309
XspI	CTAG	3 cut(s)	38, 156, 390
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.