RLG00000014255

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
50091169 .. 50092724
1556 bp
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UTR
Exon/CDS
Intron
RLM00000014255

Sequence Viewer

Length: 495 bp
ATGTTAAAGAGGATGAGCTGTTTATATAAAGAAAACAAGGCACTCACATTGCCGAGCTTGGTCACGCGAGCTTATGACCCAAGGGGGGGCATCGGAGTGTTGGGACTTTGGTTCAGCATTAGGGGGTCGGGTTCGGAATGGCTATTTTCTGACCCGCCCGTTCCAAGCAAGGAGTTGTGCTATGCGGCTTGGGCGAAGGCTCTGGGCCTCATGTGCATTATTCCAGTAACAAAGTCAGAGAGCGGCCCTTCTGCTGAAGATAAGGGCATCATTGCTGGTGGTCTACCTGATCTCAATGATAATGAAGCTGACTTGATAGATTTCTCATTCTTGGACAACAGTCTGCATCAGAATGGTGCTAAATATGAAGAGAGGGCATTTGATGATACTCATAATTCAGGTGACTTGTACTTTATGGACTTCATCAACTTTGAAAAAAGTTATGATCATTTGGTTAACAATATCCAGCTTGATGGTGGTTTATGTAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.11

Weight (kDa)

4.67

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 243
AccI GTMKAC 1 cut(s) 283
AccII CGCG 1 cut(s) 67
AciI CCGC 3 cut(s) 155, 185, 243
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 2 cut(s) 85, 86
AgsI TTSAA 1 cut(s) 434
AluBI AGCT 5 cut(s) 18, 57, 71, 308, 469
AluI AGCT 5 cut(s) 18, 57, 71, 308, 469
AoxI GGCC 2 cut(s) 205, 244
AspS9I GGNCC 2 cut(s) 205, 245
AsuHPI GGTGA 1 cut(s) 413
BccI CCATC 1 cut(s) 467
BclI TGATCA 1 cut(s) 445
BisI GCNGC 2 cut(s) 186, 244
BlsI GCNGC 2 cut(s) 187, 245
BmgT120I GGNCC 2 cut(s) 205, 245
BmsI GCATC 3 cut(s) 99, 276, 355
BoxI GACNNNNGTC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 80
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 86
Bse1I ACTGG 1 cut(s) 224
Bse3DI GCAATG 2 cut(s) 47, 270
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 2 cut(s) 85, 86
BseMI GCAATG 2 cut(s) 47, 270
BseNI ACTGG 1 cut(s) 224
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 2 cut(s) 207, 246
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 85, 86
BsmFI GGGAC 1 cut(s) 117
BsnI GGCC 2 cut(s) 207, 246
Bsp143I GATC 2 cut(s) 289, 445
BspACI CCGC 3 cut(s) 155, 185, 243
BspANI GGCC 2 cut(s) 207, 246
BspFNI CGCG 1 cut(s) 67
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 2 cut(s) 47, 270
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 2 cut(s) 289, 445
BssT1I CCWWGG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 69
BstF5I GGATG 1 cut(s) 18
BstFNI CGCG 1 cut(s) 67
BstKTI GATC 2 cut(s) 292, 448
BstMBI GATC 2 cut(s) 289, 445
BstMWI GCNNNNNNNGC 2 cut(s) 191, 213
BstPAI GACNNNNGTC 1 cut(s) 339
BstUI CGCG 1 cut(s) 67
BstXI CCANNNNNNTGG 1 cut(s) 473
BsuRI GGCC 2 cut(s) 207, 246
BtsCI GGATG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 205, 245
Csp6I GTAC 1 cut(s) 409
CviAII CATG 1 cut(s) 211
CviQI GTAC 1 cut(s) 409
DpnI GATC 2 cut(s) 291, 447
DpnII GATC 2 cut(s) 289, 445
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 80
Eco57I CTGAAG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 1 cut(s) 214
FaqI GGGAC 1 cut(s) 117
FatI CATG 1 cut(s) 210
FauI CCCGC 1 cut(s) 162
FbaI TGATCA 1 cut(s) 445
FblI GTMKAC 1 cut(s) 283
Fnu4HI GCNGC 2 cut(s) 186, 244
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 186, 244
GluI GCNGC 2 cut(s) 186, 244
HaeIII GGCC 2 cut(s) 207, 246
Hin1II CATG 1 cut(s) 214
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HpaI GTTAAC 1 cut(s) 457
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 2 cut(s) 284, 457
Hpy188I TCNGA 5 cut(s) 95, 136, 151, 238, 351
Hpy8I GTNNAC 2 cut(s) 284, 457
HpyAV CCTTC 2 cut(s) 190, 258
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4V TGCA 2 cut(s) 216, 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 213
Hsp92II CATG 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 445
KspAI GTTAAC 1 cut(s) 457
Kzo9I GATC 2 cut(s) 289, 445
LpnPI CCDG 6 cut(s) 188, 237, 261, 300, 384, 479
LweI GCATC 3 cut(s) 99, 276, 355
MaeIII GTNAC 3 cut(s) 61, 226, 401
MalI GATC 2 cut(s) 291, 447
MbiI CCGCTC 1 cut(s) 243
MboI GATC 2 cut(s) 289, 445
MboII GAAGA 2 cut(s) 269, 380
MluCI AATT 2 cut(s) 394, 487
MnlI CCTC 3 cut(s) 3, 218, 366
MseI TTAA 2 cut(s) 5, 456
MslI CAYNNNNRTG 2 cut(s) 95, 351
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 191, 213
NdeII GATC 2 cut(s) 289, 445
NlaIII CATG 1 cut(s) 214
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 2 cut(s) 61, 401
PkrI GCNGC 2 cut(s) 187, 245
PshAI GACNNNNGTC 1 cut(s) 339
PspPI GGNCC 2 cut(s) 205, 245
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 2 cut(s) 95, 351
SaqAI TTAA 2 cut(s) 5, 456
SatI GCNGC 2 cut(s) 186, 244
Sau3AI GATC 2 cut(s) 289, 445
Sau96I GGNCC 2 cut(s) 205, 245
SetI ASST 7 cut(s) 20, 59, 73, 289, 310, 403, 471
SfaNI GCATC 3 cut(s) 99, 276, 355
SmiMI CAYNNNNRTG 2 cut(s) 95, 351
Sse9I AATT 2 cut(s) 394, 487
SsiI CCGC 3 cut(s) 155, 185, 243
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 341
TasI AATT 2 cut(s) 394, 487
TatI WGTACW 1 cut(s) 408
TauI GCSGC 2 cut(s) 188, 246
Tru1I TTAA 2 cut(s) 5, 456
Tru9I TTAA 2 cut(s) 5, 456
TseFI GTSAC 2 cut(s) 61, 401
Tsp45I GTSAC 2 cut(s) 61, 401
TspDTI ATGAA 3 cut(s) 318, 381, 412
XcmI CCANNNNNNNNNTGG 1 cut(s) 473
XmiI GTMKAC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.