Rh2DG529300

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000949
Physical Location & Seq
Forward (+)
75523842 .. 75524609
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG529300.1

Sequence Viewer

Length: 768 bp
ATGACGAAGCCCAAGCTTGGAGCCAAACAGGACAACAAGGCTGTGAAGGTTGTCAAGACTCAGATCGTTAAGACCCTTTCAAAGAATTCCATCAGAAACCAGAGGAAAAGAGCCGCCAGGGCTCAGAGGAAAAGAGACGCTGAGGCTAAAACAATTGAGGCCATCTTGGCGGAAATTTCTCAGTTGACACCAACTCTGGTCAAAACCACCAACGCTCCCAAGACTCCTCCAGCTACTAAGGTCCACATGCCAGCTCATTTCATGGTTGGCACTATTCCGGTCTATCTACCTAGCACTGAGAGTTTGATGGTGACCTCTACTGAGGAGAAGGATGAAGACGAAGCTTCAGTGGCTCAAGAGTCCACTACCTCTTCACAAAGAGTTATCATACGGGAAGGTCAAAACATCGACCCAAAGCAAATAGCTGAAGGGGTAATCAAGGCCCTCGATGCACCATCAAGGCGTGCAGGGAGACCAAAGGGGGCTAGAAACAAAGAGTATCCGGTTTTCAAAGATGACTCTTACTCAGGGCCAGTCACTCGTAACAAGGCTCACAAAATGACGCCTAGAGATGCTTCTTCAGTGGGCACTGCATCAGAAGATAAGGGACAAACGTGGAAAGATAATCCACTCTATGAGACATCTGTAAAAGAAAGAGTCTCCCAGCTGCAAACTGACTGCTCCTCACAGGGTTCAGAAAGCAGTGAAAGCAGAGAACCCGATGGCGCACAAGTGCTGGTAGCTAACCCGCAAAGCCCTGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

255

Amino Acids

27.91

Weight (kDa)

9.44

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 114, 170, 749
AcsI RAATTY 2 cut(s) 85, 174
AcuI CTGAAG 3 cut(s) 330, 447, 564
AcyI GRCGYC 1 cut(s) 563
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 2 cut(s) 81, 511
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 7 cut(s) 16, 233, 254, 344, 425, 667, 743
AluI AGCT 7 cut(s) 16, 233, 254, 344, 425, 667, 743
Alw26I GTCTC 4 cut(s) 129, 466, 632, 664
AoxI GGCC 3 cut(s) 159, 441, 530
ApeKI GCWGC 1 cut(s) 667
ApoI RAATTY 2 cut(s) 85, 174
AspLEI GCGC 1 cut(s) 728
AspS9I GGNCC 3 cut(s) 241, 442, 530
AsuHPI GGTGA 1 cut(s) 322
AvaII GGWCC 1 cut(s) 241
BaeGI GKGCMC 1 cut(s) 590
BanII GRGCYC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 342
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 654
BccI CCATC 5 cut(s) 98, 170, 301, 463, 716
BciT130I CCWGG 1 cut(s) 118
BciVI GTATCC 1 cut(s) 510
BcoDI GTCTC 4 cut(s) 129, 466, 632, 664
BfaI CTAG 3 cut(s) 291, 486, 567
BfuI GTATCC 1 cut(s) 510
BglI GCCNNNNNGGC 2 cut(s) 119, 167
BisI GCNGC 2 cut(s) 114, 668
BlsI GCNGC 2 cut(s) 115, 669
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 3 cut(s) 241, 442, 530
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 3 cut(s) 439, 562, 602
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 563
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 1 cut(s) 117
BsaWI WCCGGW 2 cut(s) 277, 502
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 533
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMII CTCAG 7 cut(s) 74, 132, 137, 194, 288, 312, 540
BseNI ACTGG 1 cut(s) 533
BseRI GAGGAG 3 cut(s) 216, 338, 673
BseSI GKGCMC 1 cut(s) 590
BseXI GCAGC 1 cut(s) 654
BseYI CCCAGC 1 cut(s) 663
BsgI GTGCAG 1 cut(s) 486
BshFI GGCC 3 cut(s) 161, 443, 532
BsiSI CCGG 2 cut(s) 278, 503
BslFI GGGAC 1 cut(s) 621
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 4 cut(s) 129, 466, 632, 664
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 621
BsnI GGCC 3 cut(s) 161, 443, 532
Bso31I GGTCTC 1 cut(s) 466
Bsp1286I GDGCHC 2 cut(s) 124, 590
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 3 cut(s) 114, 170, 749
BspANI GGCC 3 cut(s) 161, 443, 532
BspCNI CTCAG 7 cut(s) 73, 133, 136, 193, 289, 313, 539
BspLI GGNNCC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 466
BsrI ACTGG 1 cut(s) 533
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 1 cut(s) 63
BssNI GRCGYC 1 cut(s) 563
Bst2UI CCWGG 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 376
BstACI GRCGYC 1 cut(s) 563
BstC8I GCNNGC 2 cut(s) 252, 465
BstDEI CTNAG 8 cut(s) 60, 123, 141, 180, 237, 297, 321, 526
BstEII GGTNACC 1 cut(s) 310
BstF5I GGATG 1 cut(s) 337
BstHHI GCGC 1 cut(s) 728
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 4 cut(s) 129, 466, 632, 664
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 5 cut(s) 119, 167, 350, 449, 708
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 250
BstPI GGTNACC 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 116
BstSLI GKGCMC 1 cut(s) 590
BstV1I GCAGC 1 cut(s) 654
BstV2I GAAGAC 1 cut(s) 342
BsuI GTATCC 1 cut(s) 510
BsuRI GGCC 3 cut(s) 161, 443, 532
BtsCI GGATG 1 cut(s) 337
BtsI GCAGTG 2 cut(s) 588, 709
BtsIMutI CAGTG 5 cut(s) 294, 354, 588, 588, 709
Cac8I GCNNGC 2 cut(s) 252, 465
CfoI GCGC 1 cut(s) 728
Cfr13I GGNCC 3 cut(s) 241, 442, 530
CseI GACGC 2 cut(s) 146, 571
CviAII CATG 2 cut(s) 247, 262
DdeI CTNAG 8 cut(s) 60, 123, 141, 180, 237, 297, 321, 526
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
EciI GGCGGA 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 241
Eco57I CTGAAG 3 cut(s) 330, 447, 564
Eco91I GGTNACC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 442
EcoO65I GGTNACC 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 2 cut(s) 250, 265
FaiI YATR 4 cut(s) 248, 263, 389, 636
FaqI GGGAC 1 cut(s) 621
FatI CATG 2 cut(s) 246, 261
FauI CCCGC 1 cut(s) 756
Fnu4HI GCNGC 2 cut(s) 114, 668
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 2 cut(s) 114, 668
FspBI CTAG 3 cut(s) 291, 486, 567
GlaI GCGC 1 cut(s) 727
GluI GCNGC 2 cut(s) 114, 668
GsaI CCCAGC 1 cut(s) 667
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 3 cut(s) 161, 443, 532
HapII CCGG 2 cut(s) 278, 503
HgaI GACGC 2 cut(s) 146, 571
HhaI GCGC 1 cut(s) 728
Hin1I GRCGYC 1 cut(s) 563
Hin1II CATG 2 cut(s) 250, 265
Hin6I GCGC 1 cut(s) 726
HinP1I GCGC 1 cut(s) 726
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HindIII AAGCTT 2 cut(s) 14, 342
HinfI GANTC 5 cut(s) 58, 223, 359, 518, 657
HpaII CCGG 2 cut(s) 278, 503
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 3 cut(s) 186, 244, 363
Hpy188I TCNGA 5 cut(s) 63, 95, 126, 598, 697
Hpy188III TCNNGA 2 cut(s) 55, 356
Hpy8I GTNNAC 3 cut(s) 186, 244, 363
HpyAV CCTTC 4 cut(s) 40, 322, 389, 422
HpyCH4IV ACGT 1 cut(s) 614
HpyCH4V TGCA 4 cut(s) 452, 467, 593, 670
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 167, 350, 449, 708
HpyF3I CTNAG 8 cut(s) 60, 123, 141, 180, 237, 297, 321, 526
HpySE526I ACGT 1 cut(s) 614
Hsp92I GRCGYC 1 cut(s) 563
Hsp92II CATG 2 cut(s) 250, 265
HspAI GCGC 1 cut(s) 726
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 3 cut(s) 20, 220, 686
Lsp1109I GCAGC 1 cut(s) 654
LweI GCATC 3 cut(s) 439, 562, 602
MaeI CTAG 3 cut(s) 291, 486, 567
MaeII ACGT 1 cut(s) 614
MaeIII GTNAC 3 cut(s) 310, 535, 542
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 4 cut(s) 347, 363, 570, 611
MfeI CAATTG 1 cut(s) 153
MhlI GDGCHC 2 cut(s) 124, 590
MluCI AATT 3 cut(s) 85, 153, 174
MlyI GAGTC 5 cut(s) 52, 217, 368, 512, 666
MseI TTAA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 667
MspI CCGG 2 cut(s) 278, 503
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 5 cut(s) 119, 167, 350, 449, 708
NdeII GATC 1 cut(s) 63
NlaIII CATG 2 cut(s) 250, 265
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 2 cut(s) 310, 535
NspI RCATGY 1 cut(s) 250
PkrI GCNGC 2 cut(s) 115, 669
PleI GAGTC 5 cut(s) 52, 217, 367, 512, 665
PpsI GAGTC 5 cut(s) 52, 217, 367, 512, 665
Psp6I CCWGG 1 cut(s) 116
PspEI GGTNACC 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 663
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 3 cut(s) 241, 442, 530
PvuII CAGCTG 1 cut(s) 667
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 2 cut(s) 114, 668
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 3 cut(s) 241, 442, 530
SchI GAGTC 5 cut(s) 52, 217, 368, 512, 666
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 2 cut(s) 124, 590
SfaNI GCATC 3 cut(s) 439, 562, 602
SinI GGWCC 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
Sse9I AATT 3 cut(s) 85, 153, 174
SsiI CCGC 3 cut(s) 114, 170, 749
SspMI CTAG 3 cut(s) 291, 486, 567
StyD4I CCNGG 1 cut(s) 116
TaiI ACGT 1 cut(s) 617
TaqI TCGA 2 cut(s) 408, 447
TasI AATT 3 cut(s) 85, 153, 174
TauI GCSGC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 5 cut(s) 301, 354, 588, 595, 709
TseFI GTSAC 2 cut(s) 310, 535
TseI GCWGC 1 cut(s) 667
Tsp45I GTSAC 2 cut(s) 310, 535
TspDTI ATGAA 2 cut(s) 250, 348
TspRI CASTG 5 cut(s) 301, 354, 588, 595, 709
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 2 cut(s) 85, 174
XceI RCATGY 1 cut(s) 250
XspI CTAG 3 cut(s) 291, 486, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.