Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000949

Physical Location & Seq

Genomic Coordinates Reverse (-)

57972010 .. 57983841

Gene Structure 11832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00377430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCTTCCCGGCGAGGTATTGGCCGCTTCCGACTACCGTGGTGTAGCTTGGACATTGGGCTACAAAATGCAAGTCACGGTTGGGTCCCATTGTGGCTTGTGGGCCCCCTTAAGAAGGTGTTACTTATACTTGGTGACATAGAAAATAGTCTTGCTAGTAAAGCTGAAGTACCAGATAATGGAGAGGATGATGTACTGCTAGGTGGAGAGTTTATTAGAAACTGTGTACCATCAAAGGGGTGTGAGACAAACTTACGATTTGATCCAGGGAGTGTTCGTCCTGATACAAGCCAAAAGCAGAAGAAAAAAGAGGAGCAGCAAGAGCAAGCATTAGTCATGTCCAAAACACAACTTGGAGTTGCCTTTCGAACAGTCACGATGGTTGGCATTTTATATGATGTGATATCTAGATCCAGGGAGAAGCCTTTTCTATATGAAATTGTGGCAAATGGGCGTAATGGTATGGAAGCAGTTGTTTTTGCCCGCATCTATATGCTTTTGATTCGGGTAAAAGAGTTGTTGGCACCGAGTGTGGTTGGAAGTGTCATTACAGCCACAGATCGCTGGCTAAAACCAAGAGGTCTTGTACTTCCTTCAAATGCAATGGACGAGGTGGACTTTTTGAGTTCATTGAAAAACGACTCAGAAAATGGACATATGGTTATTGTGATTGTTGAGGGAGCAGGACATGATCTTCTTTTAGAGAGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_assoc

Protein Analysis

237

Amino Acids

26.18

Weight (kDa)

6.34

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16861 FvH4_3g30530 FvH4_4g10331
prunus_persica	Prupe.2G142600_v2.0.a1 Prupe.5G153300_v2.0.a1
pyrus_communis	pycom11g20890
rosa_chinensis	RchiOBHm_Chr1g0344221 RchiOBHm_Chr2g0147381 RchiOBHm_Chr2g0154091 RchiOBHm_Chr4g0394431 RchiOBHm_Chr4g0421521 RchiOBHm_Chr6g0274071 RchiOBHm_Chr6g0277071
rosa_laevigata	RLG00000014255
rosa_multiflora	Rmu_co8240637.1_g000001 Rmu_co8485309.1_g000002 Rmu_sc0000455.1_g000055 Rmu_sc0001846.1_g000005 Rmu_sc0002281.1_g000023 Rmu_sc0002772.1_g000021 Rmu_sc0003316.1_g000009 Rmu_sc0004915.1_g000013 Rmu_sc0005465.1_g000001 Rmu_sc0007612.1_g000028 Rmu_sc0009481.1_g000011 Rmu_sc0011709.1_g000004 Rmu_sc0012179.1_g000003 Rmu_sc0014556.1_g000001 Rmu_sc0018308.1_g000001 Rmu_sc0033766.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021100 Rroxscaffold_2G00111780 Rroxscaffold_3G00254520 Rroxscaffold_4G00318760 Rroxscaffold_4G00318770 Rroxscaffold_5G00364750 Rroxscaffold_5G00377430 Rroxscaffold_6G00423030 Rroxscaffold_7G00203610 Rroxscaffold_7G00203960
rosa_rugosa	Rorug01G0056200 Rorug07G0209200
rosa_samantha	Rh1AG072800 Rh1BG059400 Rh1BG092000 Rh1CG071900 Rh2BG331300 Rh2BG512600 Rh2BG515900 Rh2BG517600 Rh2DG120700 Rh2DG420800 Rh2DG433100 Rh2DG524200 Rh2DG529300 Rh4AG003200 Rh4BG121400 Rh4CG032100 Rh4CG052300 Rh5BG244400 Rh5CG363100 Rh6AG117400 Rh7BG296900 Rh7BG452300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	523
AccB7I	CCANNNNNTGG	1 cut(s)	179
AciI	CCGC	2 cut(s)	25, 484
AclWI	GGATC	2 cut(s)	257, 405
AcoI	YGGCCR	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	186
AdeI	CACNNNGTG	1 cut(s)	530
AfaI	GTAC	4 cut(s)	171, 195, 228, 588
AfiI	CCNNNNNNNGG	3 cut(s)	115, 179, 236
AflII	CTTAAG	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	597, 634
AjnI	CCWGG	2 cut(s)	265, 413
AluBI	AGCT	3 cut(s)	48, 164, 708
AluI	AGCT	3 cut(s)	48, 164, 708
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	2 cut(s)	257, 405
AoxI	GGCC	2 cut(s)	22, 103
ApaI	GGGCCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	316
ArsI	GACNNNNNNTTYG	2 cut(s)	58, 90
AspS9I	GGNCC	3 cut(s)	85, 103, 104
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	146
AsuII	TTCGAA	1 cut(s)	367
AvaII	GGWCC	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	107
BarI	GAAGNNNNNNTAC	2 cut(s)	532, 564
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	2 cut(s)	238, 373
BciT130I	CCWGG	2 cut(s)	267, 415
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	3 cut(s)	156, 200, 408
BfrI	CTTAAG	1 cut(s)	110
BisI	GCNGC	2 cut(s)	25, 317
BlsI	GCNGC	2 cut(s)	26, 318
Bme1390I	CCNGG	3 cut(s)	10, 267, 415
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	3 cut(s)	85, 103, 104
BmiI	GGNNCC	5 cut(s)	86, 87, 105, 106, 525
BmrFI	CCNGG	3 cut(s)	10, 267, 415
BmsI	GCATC	1 cut(s)	495
Bpu14I	TTCGAA	1 cut(s)	367
BpuMI	CCSGG	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	38, 266, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 179, 236
Bse3DI	GCAATG	1 cut(s)	609
BseBI	CCWGG	2 cut(s)	267, 415
BseDI	CCNNGG	3 cut(s)	38, 266, 414
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	3 cut(s)	115, 179, 236
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	1 cut(s)	657
BseRI	GAGGAG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	328
BshFI	GGCC	2 cut(s)	24, 105
BshNI	GGYRCC	1 cut(s)	523
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	3 cut(s)	115, 179, 236
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	24, 105
Bsp119I	TTCGAA	1 cut(s)	367
Bsp120I	GGGCCC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	4 cut(s)	262, 410, 559, 691
BspACI	CCGC	2 cut(s)	25, 484
BspANI	GGCC	2 cut(s)	24, 105
BspCNI	CTCAG	1 cut(s)	656
BspLI	GGNNCC	5 cut(s)	86, 87, 105, 106, 525
BspPI	GGATC	2 cut(s)	257, 405
BspT104I	TTCGAA	1 cut(s)	367
BspT107I	GGYRCC	1 cut(s)	523
BspTI	CTTAAG	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	609
BssECI	CCNNGG	3 cut(s)	38, 266, 414
BssMI	GATC	4 cut(s)	262, 410, 559, 691
Bst2UI	CCWGG	2 cut(s)	267, 415
Bst4CI	ACNGT	4 cut(s)	39, 80, 224, 373
BstAFI	CTTAAG	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	367
BstC8I	GCNNGC	3 cut(s)	327, 484, 566
BstDEI	CTNAG	1 cut(s)	643
BstDSI	CCRYGG	1 cut(s)	38
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	4 cut(s)	265, 413, 562, 694
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	4 cut(s)	262, 410, 559, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 322
BstNI	CCWGG	2 cut(s)	267, 415
BstSCI	CCNGG	3 cut(s)	8, 265, 413
BstSLI	GKGCMC	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	24, 105
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	193
Cac8I	GCNNGC	3 cut(s)	327, 484, 566
Cfr13I	GGNCC	3 cut(s)	85, 103, 104
Csp6I	GTAC	4 cut(s)	170, 194, 227, 587
CviAII	CATG	2 cut(s)	337, 689
CviQI	GTAC	4 cut(s)	170, 194, 227, 587
DdeI	CTNAG	1 cut(s)	643
DpnI	GATC	4 cut(s)	264, 412, 561, 693
DpnII	GATC	4 cut(s)	262, 410, 559, 691
DraIII	CACNNNGTG	1 cut(s)	530
EaeI	YGGCCR	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	186
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoO109I	RGGNCCY	2 cut(s)	85, 104
EcoRII	CCWGG	2 cut(s)	265, 413
EcoRV	GATATC	1 cut(s)	405
EcoT38I	GRGCYC	1 cut(s)	107
FaeI	CATG	2 cut(s)	340, 692
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	336, 688
FauI	CCCGC	1 cut(s)	491
FauNDI	CATATG	1 cut(s)	657
Fnu4HI	GCNGC	2 cut(s)	25, 317
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	25, 317
FspBI	CTAG	3 cut(s)	156, 200, 408
GluI	GCNGC	2 cut(s)	25, 317
HaeIII	GGCC	2 cut(s)	24, 105
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	2 cut(s)	340, 692
HinfI	GANTC	2 cut(s)	502, 641
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	227, 616
Hpy188I	TCNGA	2 cut(s)	32, 646
Hpy188III	TCNNGA	3 cut(s)	281, 376, 408
Hpy8I	GTNNAC	2 cut(s)	227, 616
HpyAV	CCTTC	2 cut(s)	109, 603
HpyCH4III	ACNGT	4 cut(s)	39, 80, 224, 373
HpyCH4V	TGCA	2 cut(s)	71, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 322
HpyF3I	CTNAG	1 cut(s)	643
Hsp92II	CATG	2 cut(s)	340, 692
KflI	GGGWCCC	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	262, 410, 559, 691
LmnI	GCTCC	2 cut(s)	313, 680
LpnPI	CCDG	9 cut(s)	23, 186, 252, 279, 294, 400, 427, 550, 669
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	1 cut(s)	495
MaeI	CTAG	3 cut(s)	156, 200, 408
MaeIII	GTNAC	4 cut(s)	74, 120, 134, 373
MalI	GATC	4 cut(s)	264, 412, 561, 693
MboI	GATC	4 cut(s)	262, 410, 559, 691
MboII	GAAGA	2 cut(s)	313, 686
MflI	RGATCY	1 cut(s)	410
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	1 cut(s)	438
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	2 cut(s)	55, 517
MnlI	CCTC	6 cut(s)	8, 178, 304, 572, 604, 670
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	491
MspCI	CTTAAG	1 cut(s)	110
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	3 cut(s)	10, 267, 415
MvaI	CCWGG	2 cut(s)	267, 415
MwoI	GCNNNNNNNGC	2 cut(s)	161, 322
NciI	CCSGG	1 cut(s)	10
NdeI	CATATG	1 cut(s)	657
NdeII	GATC	4 cut(s)	262, 410, 559, 691
NlaIII	CATG	2 cut(s)	340, 692
NlaIV	GGNNCC	5 cut(s)	86, 87, 105, 106, 525
NmuCI	GTSAC	3 cut(s)	74, 134, 373
NspV	TTCGAA	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	502
PflMI	CCANNNNNTGG	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	26, 318
PleI	GAGTC	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	635
PpuMI	RGGWCCY	1 cut(s)	85
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	2 cut(s)	265, 413
PspGI	CCWGG	2 cut(s)	265, 413
PspN4I	GGNNCC	5 cut(s)	86, 87, 105, 106, 525
PspOMI	GGGCCC	1 cut(s)	103
PspPI	GGNCC	3 cut(s)	85, 103, 104
PspPPI	RGGWCCY	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	410
RsaI	GTAC	4 cut(s)	171, 195, 228, 588
RsaNI	GTAC	4 cut(s)	170, 194, 227, 587
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	2 cut(s)	25, 317
Sau3AI	GATC	4 cut(s)	262, 410, 559, 691
Sau96I	GGNCC	3 cut(s)	85, 103, 104
SchI	GAGTC	1 cut(s)	635
ScrFI	CCNGG	3 cut(s)	10, 267, 415
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	8 cut(s)	19, 50, 120, 166, 205, 583, 615, 710
SfaNI	GCATC	1 cut(s)	495
SfuI	TTCGAA	1 cut(s)	367
SinI	GGWCC	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	438
SsiI	CCGC	2 cut(s)	25, 484
SspMI	CTAG	3 cut(s)	156, 200, 408
StyD4I	CCNGG	3 cut(s)	8, 265, 413
TaaI	ACNGT	4 cut(s)	39, 80, 224, 373
TaqI	TCGA	1 cut(s)	367
TasI	AATT	1 cut(s)	438
TatI	WGTACW	2 cut(s)	193, 586
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseFI	GTSAC	3 cut(s)	74, 134, 373
TseI	GCWGC	1 cut(s)	316
Tsp45I	GTSAC	3 cut(s)	74, 134, 373
TspDTI	ATGAA	2 cut(s)	450, 618
Van91I	CCANNNNNTGG	1 cut(s)	179
Vha464I	CTTAAG	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	85
XagI	CCTNNNNNAGG	1 cut(s)	113
XbaI	TCTAGA	1 cut(s)	407
XspI	CTAG	3 cut(s)	156, 200, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.