pycom11g20890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000949
Physical Location & Seq
Forward (+)
24050122 .. 24050400
279 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g20890.1

Sequence Viewer

Length: 279 bp
ATGTTGGAACGCTGGTTCAGTCTCAGCGGGTTGGGTCCGTCGTGGCTCTATTCTGGCCCGCCCATTCCAAGCTGGGAGTTGGGCTGTGTGGCTTGGGCGAAGGCTCAGGCTTCATGGTTCCTAGAGCGGAGGGCACCGCGTAAGGCTGGCTTCACAGAGCAACGATTACCTCCCGCTCTCGGCAGTGGAAGGTTAACGGGTCGGTGCCATCCGGATCCACTATGGCCCGCTGAACTGTTCCAATTGAACCAACATTTTTTTTTGCTTTCATTCGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.43

Weight (kDa)

9.38

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 133, 204
AccBSI CCGCTC 2 cut(s) 127, 176
AccII CGCG 1 cut(s) 139
AccIII TCCGGA 1 cut(s) 211
AciI CCGC 6 cut(s) 27, 59, 127, 137, 174, 228
AclWI GGATC 2 cut(s) 209, 222
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 1 cut(s) 247
AloI GAACNNNNNNTCC 1 cut(s) 31
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 2 cut(s) 209, 222
Aor13HI TCCGGA 1 cut(s) 211
AoxI GGCC 2 cut(s) 55, 224
AspS9I GGNCC 3 cut(s) 35, 56, 225
AvaII GGWCC 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 136
BamHI GGATCC 1 cut(s) 214
BanI GGYRCC 2 cut(s) 133, 204
BccI CCATC 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 1 cut(s) 122
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 3 cut(s) 35, 56, 225
BmiI GGNNCC 5 cut(s) 36, 119, 135, 206, 216
Bpu10I CCTNAGC 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 179
BseAI TCCGGA 1 cut(s) 211
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMII CTCAG 2 cut(s) 37, 119
BseSI GKGCMC 1 cut(s) 136
BseYI CCCAGC 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 2 cut(s) 57, 226
BshNI GGYRCC 2 cut(s) 133, 204
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 26
BsnI GGCC 2 cut(s) 57, 226
Bsp1286I GDGCHC 1 cut(s) 136
Bsp13I TCCGGA 1 cut(s) 211
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 6 cut(s) 27, 59, 127, 137, 174, 228
BspANI GGCC 2 cut(s) 57, 226
BspCNI CTCAG 2 cut(s) 36, 118
BspEI TCCGGA 1 cut(s) 211
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 5 cut(s) 36, 119, 135, 206, 216
BspPI GGATC 2 cut(s) 209, 222
BspT107I GGYRCC 2 cut(s) 133, 204
BsrBI CCGCTC 2 cut(s) 127, 176
BssMI GATC 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 237
BstC8I GCNNGC 3 cut(s) 59, 148, 228
BstDEI CTNAG 2 cut(s) 23, 105
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 1 cut(s) 139
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 1 cut(s) 214
BstSLI GKGCMC 1 cut(s) 136
BstUI CGCG 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 2 cut(s) 57, 226
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 3 cut(s) 59, 148, 228
Cfr13I GGNCC 3 cut(s) 35, 56, 225
CviAII CATG 1 cut(s) 114
DdeI CTNAG 2 cut(s) 23, 105
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 35
FaeI CATG 1 cut(s) 117
FaiI YATR 2 cut(s) 115, 223
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 1 cut(s) 113
FauI CCCGC 4 cut(s) 20, 66, 181, 235
FokI GGATG 1 cut(s) 195
FspBI CTAG 1 cut(s) 122
GsaI CCCAGC 1 cut(s) 76
HaeIII GGCC 2 cut(s) 57, 226
HapII CCGG 1 cut(s) 212
Hin1II CATG 1 cut(s) 117
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HpaI GTTAAC 1 cut(s) 195
HpaII CCGG 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 195
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 1 cut(s) 195
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 94, 183
HpyCH4III ACNGT 1 cut(s) 237
HpyF3I CTNAG 2 cut(s) 23, 105
Hsp92II CATG 1 cut(s) 117
Kpn2I TCCGGA 1 cut(s) 211
KspAI GTTAAC 1 cut(s) 195
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 5 cut(s) 39, 58, 92, 132, 225
MaeI CTAG 1 cut(s) 122
MalI GATC 1 cut(s) 216
MbiI CCGCTC 2 cut(s) 127, 176
MboI GATC 1 cut(s) 214
MfeI CAATTG 1 cut(s) 242
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 1 cut(s) 242
MnlI CCTC 2 cut(s) 123, 180
MroI TCCGGA 1 cut(s) 211
MseI TTAA 1 cut(s) 194
MspA1I CMGCKG 2 cut(s) 27, 230
MspI CCGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 242
MvnI CGCG 1 cut(s) 139
NdeII GATC 1 cut(s) 214
NlaIII CATG 1 cut(s) 117
NlaIV GGNNCC 5 cut(s) 36, 119, 135, 206, 216
NmeAIII GCCGAG 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 72
PspN4I GGNNCC 5 cut(s) 36, 119, 135, 206, 216
PspPI GGNCC 3 cut(s) 35, 56, 225
PsuI RGATCY 1 cut(s) 214
SaqAI TTAA 1 cut(s) 194
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 3 cut(s) 35, 56, 225
SduI GDGCHC 1 cut(s) 136
SetI ASST 3 cut(s) 74, 172, 194
SinI GGWCC 1 cut(s) 35
Sse9I AATT 1 cut(s) 242
SsiI CCGC 6 cut(s) 27, 59, 127, 137, 174, 228
SspMI CTAG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 237
TasI AATT 1 cut(s) 242
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 102, 258
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 35
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.