Rh2DG420800

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000949
Physical Location & Seq
Reverse (-)
61013378 .. 61021162
7785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG420800.1

Sequence Viewer

Length: 750 bp
ATGCCAGCTCATTTCATGGTTGGCACTATCCCGGTCTATCTACCTAACACTGAGAGTGTGATGGTGACCTTTACTGAGGAGAAGGATGAAGACGAAGCTTCAGTGGCTCAAGAGTCCACCACCTCTTCACAAAGAGTTATCATACGGGAAGGTCAAAATATCGACCCAAAGCAAATAGCTGAAGGGGTAATCAAGGCCCTCGATGCACCATCAAAGCATGCAGGGAGGCCAAAGGGGGCTAGAAACAAAGAGTATCCTGTTTTCAAAGATGACTCTTACTCAGGGCCAGTCACCCGCAACAAGGCTCACAAAATGACGCCTAGAGATGCTTCTTCAGTGGGTACTGCATCAGAAGATGAGGGGCAAACGTGGAAAGATAATCCACTCTATGAGACATCTGTAAAAGAAAGAGTCTCCCAACTGCAAACTGATGGCTCCTCACAGGGTTCAGAAAGCAGTGAAAGTAGAGAGCCCGATGGTGCACAAGTGCTGGTAGCTAACCCGCAAAGCCCGGAAGAGCAGATGCAAGAGTTGCAAAGAAGGTTAGCACAGCTTGAGCTTGAGGCTATCCGAAGGCAAGAGGAAGAGGCCAAGAGGCGTGCTGAAATAGAAGCAGCAGCAACCAAAAAATTGGAAGAGAAGGAGGCTGAAGTAGCTGCATTGGTAGCACAACTAGCCTTAATGGCCAATAACAAGGACAGGGGCAAAGAGATGTTCCAATACACAGAACGGAAGCATGAGGAACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

249

Amino Acids

27.81

Weight (kDa)

5.08

Isoelectric Point (pI)

64.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 295, 503
AclI AACGTT 1 cut(s) 745
AcoI YGGCCR 1 cut(s) 684
AcuI CTGAAG 4 cut(s) 84, 201, 318, 669
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 1 cut(s) 343
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 1 cut(s) 265
AluBI AGCT 7 cut(s) 8, 98, 179, 497, 553, 559, 656
AluI AGCT 7 cut(s) 8, 98, 179, 497, 553, 559, 656
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 2 cut(s) 386, 418
Alw44I GTGCAC 1 cut(s) 480
AoxI GGCC 5 cut(s) 195, 227, 284, 588, 684
ApaLI GTGCAC 1 cut(s) 480
ApeKI GCWGC 3 cut(s) 614, 617, 656
AspS9I GGNCC 2 cut(s) 196, 284
AsuC2I CCSGG 2 cut(s) 32, 512
AsuHPI GGTGA 2 cut(s) 76, 283
BaeGI GKGCMC 1 cut(s) 484
BalI TGGCCA 1 cut(s) 686
BanII GRGCYC 1 cut(s) 474
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 484
BbvI GCAGC 3 cut(s) 626, 629, 643
BccI CCATC 4 cut(s) 55, 217, 425, 470
BciVI GTATCC 1 cut(s) 264
BcnI CCSGG 2 cut(s) 32, 512
BcoDI GTCTC 2 cut(s) 386, 418
BfaI CTAG 3 cut(s) 240, 321, 674
BfuI GTATCC 1 cut(s) 264
BglI GCCNNNNNGGC 1 cut(s) 683
BisI GCNGC 3 cut(s) 615, 618, 657
BlsI GCNGC 3 cut(s) 616, 619, 658
Bme1390I CCNGG 2 cut(s) 32, 512
BmgT120I GGNCC 2 cut(s) 196, 284
BmiI GGNNCC 1 cut(s) 436
BmrFI CCNGG 2 cut(s) 32, 512
BmsI GCATC 4 cut(s) 193, 316, 356, 513
BpiI GAAGAC 1 cut(s) 96
BpuEI CTTGAG 3 cut(s) 93, 575, 581
BpuMI CCSGG 2 cut(s) 32, 512
BsaHI GRCGYC 1 cut(s) 317
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 287
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 3 cut(s) 42, 66, 294
BseNI ACTGG 1 cut(s) 287
BseRI GAGGAG 2 cut(s) 92, 427
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 3 cut(s) 626, 629, 643
BshFI GGCC 5 cut(s) 197, 229, 286, 590, 686
BsiHKAI GWGCWC 1 cut(s) 484
BsiSI CCGG 2 cut(s) 32, 512
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 2 cut(s) 386, 418
BsnI GGCC 5 cut(s) 197, 229, 286, 590, 686
Bsp1286I GDGCHC 2 cut(s) 474, 484
BspACI CCGC 2 cut(s) 295, 503
BspANI GGCC 5 cut(s) 197, 229, 286, 590, 686
BspCNI CTCAG 3 cut(s) 43, 67, 293
BspLI GGNNCC 1 cut(s) 436
BspQI GCTCTTC 1 cut(s) 510
BsrI ACTGG 1 cut(s) 287
BssNI GRCGYC 1 cut(s) 317
Bst6I CTCTTC 4 cut(s) 130, 510, 579, 630
BstACI GRCGYC 1 cut(s) 317
BstAPI GCANNNNNTGC 1 cut(s) 532
BstC8I GCNNGC 3 cut(s) 6, 219, 600
BstDEI CTNAG 3 cut(s) 51, 75, 280
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 1 cut(s) 91
BstMAI GTCTC 2 cut(s) 386, 418
BstMWI GCNNNNNNNGC 7 cut(s) 104, 203, 532, 653, 665, 674, 683
BstNSI RCATGY 1 cut(s) 221
BstPI GGTNACC 1 cut(s) 64
BstSCI CCNGG 2 cut(s) 30, 510
BstSLI GKGCMC 1 cut(s) 484
BstV1I GCAGC 3 cut(s) 626, 629, 643
BstV2I GAAGAC 1 cut(s) 96
BstXI CCANNNNNNTGG 1 cut(s) 631
BsuI GTATCC 1 cut(s) 264
BsuRI GGCC 5 cut(s) 197, 229, 286, 590, 686
BtsCI GGATG 1 cut(s) 91
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 4 cut(s) 48, 108, 342, 463
Cac8I GCNNGC 3 cut(s) 6, 219, 600
Cfr13I GGNCC 2 cut(s) 196, 284
CseI GACGC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 342
CviAII CATG 3 cut(s) 16, 218, 737
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 3 cut(s) 51, 75, 280
EaeI YGGCCR 1 cut(s) 684
Eam1104I CTCTTC 4 cut(s) 130, 510, 579, 630
EarI CTCTTC 4 cut(s) 130, 510, 579, 630
Eco24I GRGCYC 1 cut(s) 474
Eco57I CTGAAG 4 cut(s) 84, 201, 318, 669
Eco91I GGTNACC 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 196
EcoO65I GGTNACC 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 474
FaeI CATG 3 cut(s) 19, 221, 740
FaiI YATR 5 cut(s) 17, 143, 219, 390, 738
FatI CATG 3 cut(s) 15, 217, 736
FauI CCCGC 2 cut(s) 302, 510
Fnu4HI GCNGC 3 cut(s) 615, 618, 657
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 474
Fsp4HI GCNGC 3 cut(s) 615, 618, 657
FspBI CTAG 3 cut(s) 240, 321, 674
GluI GCNGC 3 cut(s) 615, 618, 657
HaeIII GGCC 5 cut(s) 197, 229, 286, 590, 686
HapII CCGG 2 cut(s) 32, 512
HgaI GACGC 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 3 cut(s) 19, 221, 740
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 3 cut(s) 113, 272, 411
HpaII CCGG 2 cut(s) 32, 512
HphI GGTGA 2 cut(s) 76, 283
Hpy166II GTNNAC 2 cut(s) 117, 482
Hpy188I TCNGA 3 cut(s) 352, 451, 572
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 2 cut(s) 117, 482
HpyAV CCTTC 6 cut(s) 76, 143, 176, 534, 567, 634
HpyCH4IV ACGT 2 cut(s) 368, 745
HpyCH4V TGCA 8 cut(s) 206, 221, 347, 424, 482, 526, 535, 659
HpyF10VI GCNNNNNNNGC 7 cut(s) 104, 203, 532, 653, 665, 674, 683
HpyF3I CTNAG 3 cut(s) 51, 75, 280
HpySE526I ACGT 2 cut(s) 368, 745
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 3 cut(s) 19, 221, 740
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 1 cut(s) 440
Lsp1109I GCAGC 3 cut(s) 626, 629, 643
LweI GCATC 4 cut(s) 193, 316, 356, 513
MaeI CTAG 3 cut(s) 240, 321, 674
MaeII ACGT 2 cut(s) 368, 745
MaeIII GTNAC 2 cut(s) 64, 289
MboII GAAGA 7 cut(s) 101, 117, 324, 365, 527, 596, 647
MhlI GDGCHC 2 cut(s) 474, 484
MlsI TGGCCA 1 cut(s) 686
MluCI AATT 1 cut(s) 629
MluNI TGGCCA 1 cut(s) 686
MlyI GAGTC 3 cut(s) 122, 266, 420
Mox20I TGGCCA 1 cut(s) 686
MscI TGGCCA 1 cut(s) 686
MseI TTAA 1 cut(s) 680
Msp20I TGGCCA 1 cut(s) 686
MspI CCGG 2 cut(s) 32, 512
MspR9I CCNGG 2 cut(s) 32, 512
MwoI GCNNNNNNNGC 7 cut(s) 104, 203, 532, 653, 665, 674, 683
NciI CCSGG 2 cut(s) 32, 512
NlaIII CATG 3 cut(s) 19, 221, 740
NlaIV GGNNCC 1 cut(s) 436
NmuCI GTSAC 2 cut(s) 64, 289
NspI RCATGY 1 cut(s) 221
PaeI GCATGC 1 cut(s) 221
PciSI GCTCTTC 1 cut(s) 510
PkrI GCNGC 3 cut(s) 616, 619, 658
PleI GAGTC 3 cut(s) 121, 266, 419
PpsI GAGTC 3 cut(s) 121, 266, 419
Psp1406I AACGTT 1 cut(s) 745
PspEI GGTNACC 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 436
PspPI GGNCC 2 cut(s) 196, 284
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 1 cut(s) 680
SatI GCNGC 3 cut(s) 615, 618, 657
Sau96I GGNCC 2 cut(s) 196, 284
SchI GAGTC 3 cut(s) 122, 266, 420
ScrFI CCNGG 2 cut(s) 32, 512
SduI GDGCHC 2 cut(s) 474, 484
SfaNI GCATC 4 cut(s) 193, 316, 356, 513
SmlI CTYRAG 3 cut(s) 108, 554, 560
SmoI CTYRAG 3 cut(s) 108, 554, 560
SphI GCATGC 1 cut(s) 221
Sse9I AATT 1 cut(s) 629
SsiI CCGC 2 cut(s) 295, 503
SspMI CTAG 3 cut(s) 240, 321, 674
StyD4I CCNGG 2 cut(s) 30, 510
TaiI ACGT 2 cut(s) 371, 748
TaqI TCGA 2 cut(s) 162, 201
TasI AATT 1 cut(s) 629
Tru1I TTAA 1 cut(s) 680
Tru9I TTAA 1 cut(s) 680
TscAI CASTG 4 cut(s) 55, 108, 342, 463
TseFI GTSAC 2 cut(s) 64, 289
TseI GCWGC 3 cut(s) 614, 617, 656
Tsp45I GTSAC 2 cut(s) 64, 289
TspDTI ATGAA 2 cut(s) 4, 102
TspGWI ACGGA 1 cut(s) 745
TspRI CASTG 4 cut(s) 55, 108, 342, 463
VneI GTGCAC 1 cut(s) 480
XceI RCATGY 1 cut(s) 221
XspI CTAG 3 cut(s) 240, 321, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.