Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002772.1

Orthogroup ID

OG0000949

Physical Location & Seq

Genomic Coordinates Reverse (-)

81698 .. 83813

Gene Structure 2116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002772.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ctggaagccaagaagcgtgctgatgtggaggccgaagtagttagacagttagccgctaaagatgctgaaattgctgacctagtggcaaagtgtgctctccttatgaatgaaaaggacaaaaagaaaaagaactacgagaaatcttgtcattctgattcaaatgagttcacgctacaagatgtcaagactatgatagctgaaggggatacgctgcagacgggccatcactcgaggaatccttcttccagcctcctcccctgcagcctacacaaacccgcaagctttctgcttgctaccgccaccataccagtagcccacgatgcacacacgccctcctgcgtcgctgcccttctgcacgacgcccccgcgcccagacgcaagctttctacttgctgccgccaccgtaccagcagcccacgcccctgccccgcgttgcctccctcgcttcagcagtacctgcaagccattgacgcaccccagcgctctcgtcgcttccacctgcaaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.62

Weight (kDa)

9.02

Isoelectric Point (pI)

63.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16861 FvH4_3g30530 FvH4_4g10331
prunus_persica	Prupe.2G142600_v2.0.a1 Prupe.5G153300_v2.0.a1
pyrus_communis	pycom11g20890
rosa_chinensis	RchiOBHm_Chr1g0344221 RchiOBHm_Chr2g0147381 RchiOBHm_Chr2g0154091 RchiOBHm_Chr4g0394431 RchiOBHm_Chr4g0421521 RchiOBHm_Chr6g0274071 RchiOBHm_Chr6g0277071
rosa_laevigata	RLG00000014255
rosa_multiflora	Rmu_co8240637.1_g000001 Rmu_co8485309.1_g000002 Rmu_sc0000455.1_g000055 Rmu_sc0001846.1_g000005 Rmu_sc0002281.1_g000023 Rmu_sc0002772.1_g000021 Rmu_sc0003316.1_g000009 Rmu_sc0004915.1_g000013 Rmu_sc0005465.1_g000001 Rmu_sc0007612.1_g000028 Rmu_sc0009481.1_g000011 Rmu_sc0011709.1_g000004 Rmu_sc0012179.1_g000003 Rmu_sc0014556.1_g000001 Rmu_sc0018308.1_g000001 Rmu_sc0033766.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021100 Rroxscaffold_2G00111780 Rroxscaffold_3G00254520 Rroxscaffold_4G00318760 Rroxscaffold_4G00318770 Rroxscaffold_5G00364750 Rroxscaffold_5G00377430 Rroxscaffold_6G00423030 Rroxscaffold_7G00203610 Rroxscaffold_7G00203960
rosa_rugosa	Rorug01G0056200 Rorug07G0209200
rosa_samantha	Rh1AG072800 Rh1BG059400 Rh1BG092000 Rh1CG071900 Rh2BG331300 Rh2BG512600 Rh2BG515900 Rh2BG517600 Rh2DG120700 Rh2DG420800 Rh2DG433100 Rh2DG524200 Rh2DG529300 Rh4AG003200 Rh4BG121400 Rh4CG032100 Rh4CG052300 Rh5BG244400 Rh5CG363100 Rh6AG117400 Rh7BG296900 Rh7BG452300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	465
AccII	CGCG	2 cut(s)	368, 431
AciI	CCGC	6 cut(s)	54, 276, 297, 366, 397, 429
AcsI	RAATTY	1 cut(s)	504
AcuI	CTGAAG	2 cut(s)	219, 431
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	2 cut(s)	406, 455
AfeI	AGCGCT	1 cut(s)	482
AgsI	TTSAA	1 cut(s)	159
AluBI	AGCT	3 cut(s)	197, 282, 382
AluI	AGCT	3 cut(s)	197, 282, 382
Alw21I	GWGCWC	1 cut(s)	97
AlwNI	CAGNNNCTG	1 cut(s)	457
Ama87I	CYCGRG	1 cut(s)	229
Aor51HI	AGCGCT	1 cut(s)	482
AoxI	GGCC	2 cut(s)	30, 220
ApeKI	GCWGC	5 cut(s)	211, 261, 344, 393, 411
ApoI	RAATTY	1 cut(s)	504
AspLEI	GCGC	2 cut(s)	370, 483
AspS9I	GGNCC	1 cut(s)	220
AvaI	CYCGRG	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	5 cut(s)	198, 273, 331, 380, 423
BccI	CCATC	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	2 cut(s)	212, 259
BfoI	RGCGCY	1 cut(s)	484
BfuAI	ACCTGC	1 cut(s)	465
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	7 cut(s)	54, 212, 262, 345, 394, 397, 412
BlsI	GCNGC	7 cut(s)	55, 213, 263, 346, 395, 398, 413
BmeT110I	CYCGRG	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	220
BmsI	GCATC	2 cut(s)	52, 310
BsaHI	GRCGYC	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bse1I	ACTGG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	308
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	5 cut(s)	198, 273, 331, 380, 423
BseYI	CCCAGC	1 cut(s)	477
BsgI	GTGCAG	1 cut(s)	338
Bsh1236I	CGCG	2 cut(s)	368, 431
BshFI	GGCC	2 cut(s)	32, 222
BsiHKAI	GWGCWC	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	229
BsnI	GGCC	2 cut(s)	32, 222
BsoBI	CYCGRG	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	97
BspACI	CCGC	6 cut(s)	54, 276, 297, 366, 397, 429
BspANI	GGCC	2 cut(s)	32, 222
BspFNI	CGCG	2 cut(s)	368, 431
BspMAI	CTGCAG	2 cut(s)	216, 263
BspMI	ACCTGC	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	308
BssNI	GRCGYC	1 cut(s)	360
Bst4CI	ACNGT	2 cut(s)	48, 404
BstACI	GRCGYC	1 cut(s)	360
BstAPI	GCANNNNNTGC	2 cut(s)	92, 457
BstC8I	GCNNGC	5 cut(s)	18, 280, 291, 380, 462
BstFNI	CGCG	2 cut(s)	368, 431
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	2 cut(s)	370, 483
BstMWI	GCNNNNNNNGC	9 cut(s)	62, 71, 92, 320, 417, 442, 457, 470, 489
BstSFI	CTRYAG	2 cut(s)	212, 259
BstUI	CGCG	2 cut(s)	368, 431
BstV1I	GCAGC	5 cut(s)	198, 273, 331, 380, 423
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	32, 222
BveI	ACCTGC	1 cut(s)	465
Cac8I	GCNNGC	5 cut(s)	18, 280, 291, 380, 462
CaiI	CAGNNNCTG	1 cut(s)	457
CfoI	GCGC	2 cut(s)	370, 483
Cfr13I	GGNCC	1 cut(s)	220
CseI	GACGC	4 cut(s)	328, 368, 384, 479
Csp6I	GTAC	2 cut(s)	405, 454
CviQI	GTAC	2 cut(s)	405, 454
Eco47III	AGCGCT	1 cut(s)	482
Eco57I	CTGAAG	2 cut(s)	219, 431
Eco88I	CYCGRG	1 cut(s)	229
FaiI	YATR	3 cut(s)	104, 191, 305
FauI	CCCGC	3 cut(s)	283, 373, 436
Fnu4HI	GCNGC	7 cut(s)	54, 212, 262, 345, 394, 397, 412
Fsp4HI	GCNGC	7 cut(s)	54, 212, 262, 345, 394, 397, 412
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	2 cut(s)	369, 482
GluI	GCNGC	7 cut(s)	54, 212, 262, 345, 394, 397, 412
GsaI	CCCAGC	1 cut(s)	481
HaeII	RGCGCY	1 cut(s)	484
HaeIII	GGCC	2 cut(s)	32, 222
HgaI	GACGC	4 cut(s)	328, 368, 384, 479
HhaI	GCGC	2 cut(s)	370, 483
Hin1I	GRCGYC	1 cut(s)	360
Hin6I	GCGC	2 cut(s)	368, 481
HinP1I	GCGC	2 cut(s)	368, 481
HindIII	AAGCTT	2 cut(s)	280, 380
HinfI	GANTC	2 cut(s)	155, 235
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	1 cut(s)	168
Hpy99I	CGWCG	3 cut(s)	344, 362, 492
HpyAV	CCTTC	3 cut(s)	194, 249, 359
HpyCH4III	ACNGT	2 cut(s)	48, 404
HpyCH4V	TGCA	6 cut(s)	214, 261, 323, 355, 460, 502
HpyF10VI	GCNNNNNNNGC	9 cut(s)	62, 71, 92, 320, 417, 442, 457, 470, 489
Hsp92I	GRCGYC	1 cut(s)	360
HspAI	GCGC	2 cut(s)	368, 481
LpnPI	CCDG	9 cut(s)	259, 271, 321, 349, 385, 421, 436, 470, 491
Lsp1109I	GCAGC	5 cut(s)	198, 273, 331, 380, 423
LweI	GCATC	2 cut(s)	52, 310
MaeI	CTAG	1 cut(s)	80
MboII	GAAGA	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	2 cut(s)	69, 504
MnlI	CCTC	7 cut(s)	22, 225, 260, 263, 343, 447, 451
MvnI	CGCG	2 cut(s)	368, 431
MwoI	GCNNNNNNNGC	9 cut(s)	62, 71, 92, 320, 417, 442, 457, 470, 489
PaeR7I	CTCGAG	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	155, 235
PkrI	GCNGC	7 cut(s)	55, 213, 263, 346, 395, 398, 413
PspFI	CCCAGC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	220
PspXI	VCTCGAGB	1 cut(s)	229
PstI	CTGCAG	2 cut(s)	216, 263
PstNI	CAGNNNCTG	1 cut(s)	457
RsaI	GTAC	2 cut(s)	406, 455
RsaNI	GTAC	2 cut(s)	405, 454
SatI	GCNGC	7 cut(s)	54, 212, 262, 345, 394, 397, 412
Sau96I	GGNCC	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	6 cut(s)	81, 199, 284, 384, 459, 501
SfaNI	GCATC	2 cut(s)	52, 310
SfcI	CTRYAG	2 cut(s)	212, 259
Sfr274I	CTCGAG	1 cut(s)	229
SlaI	CTCGAG	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	2 cut(s)	69, 504
SsiI	CCGC	6 cut(s)	54, 276, 297, 366, 397, 429
SspMI	CTAG	1 cut(s)	80
TaaI	ACNGT	2 cut(s)	48, 404
TaqI	TCGA	1 cut(s)	230
TasI	AATT	2 cut(s)	69, 504
TauI	GCSGC	2 cut(s)	56, 399
TfiI	GAWTC	2 cut(s)	155, 235
TseI	GCWGC	5 cut(s)	211, 261, 344, 393, 411
TspDTI	ATGAA	2 cut(s)	119, 123
XapI	RAATTY	1 cut(s)	504
XhoI	CTCGAG	1 cut(s)	229
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.