Rh2DG120700

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000949
Physical Location & Seq
Forward (+)
10021429 .. 10022414
986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG120700.1

Sequence Viewer

Length: 777 bp
ATGACAAAGCCCAAGCTTGGAGCCAAACAGGACAACAAGGCTGTGAAGGTTGTCAAGACTCAGATCGTTAAGACCCTTTCAAAGAATGCCATCAGAAACCAAAGGAAAAGAGCCGCCAGGGCTCAGAGGAAAAGAGACGCTGAGGCTAAAACAATTGAGGCCATCTTGGCGGAAATTGCTCAGTTGACACCAGCTCTGGTCAAAACCACCAACGCTCCCAAGACTCCTCCAGCTACTAAGGTCCACATGCTAGCTCATTTCATGGTTGGCACCATTCCGGTCTATCTACCTAGCACTGAGAGTGTGATGGTGACCTCTACTGAGGAGAAAGAGGAAGACGAAGCTTCAGTGGCTCAGGAGTCCACTACCTCTTCACAAAGAGTTATCATACGGGAAGGTCAAAACATCGACCCAAAACAAATAGCTGAAGGGGTAATCAAGGCCCTCGACGCACCATCAAGGCATGTAGGGAGGCCAAAGGGGGCTAGAAACAAAGAGTATCCGGTTTTCAAAGATGACTCTTACTCAGGGCCAGTCACTCGCAACAAGGCTCACAAAATGACGCCTAGAGATGCTTCTTCAGTGGGCACTGCATCAAAAGATGAGGGACAAACGTGGAAAGATAATCCACTCTATGAGACATCTGTAAAAGAAAGAGTCTCCCGGCTGCAAACTGACGGCTCCTCGCAGGGTTCAGAAAGCAGTGAAAGCAGAGAACCCGATGGTGCACAAGTGCTGGGGCAAAGAGATGTTCCAATACACAGAACGGAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

258

Amino Acids

28.26

Weight (kDa)

9.65

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 269
AciI CCGC 2 cut(s) 114, 170
AcuI CTGAAG 3 cut(s) 330, 447, 564
AcyI GRCGYC 1 cut(s) 563
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 2 cut(s) 81, 511
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 6 cut(s) 16, 194, 233, 254, 344, 425
AluI AGCT 6 cut(s) 16, 194, 233, 254, 344, 425
Alw21I GWGCWC 1 cut(s) 730
Alw26I GTCTC 3 cut(s) 129, 632, 664
Alw44I GTGCAC 1 cut(s) 726
AoxI GGCC 4 cut(s) 159, 441, 473, 530
ApaLI GTGCAC 1 cut(s) 726
ApeKI GCWGC 1 cut(s) 667
AspS9I GGNCC 3 cut(s) 241, 442, 530
AsuC2I CCSGG 1 cut(s) 664
AsuHPI GGTGA 1 cut(s) 322
AsuNHI GCTAGC 1 cut(s) 250
AvaII GGWCC 1 cut(s) 241
BaeGI GKGCMC 2 cut(s) 590, 730
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 730
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 654
BccI CCATC 5 cut(s) 98, 170, 301, 463, 716
BceAI ACGGC 1 cut(s) 694
BciT130I CCWGG 1 cut(s) 118
BciVI GTATCC 1 cut(s) 510
BcnI CCSGG 1 cut(s) 664
BcoDI GTCTC 3 cut(s) 129, 632, 664
BfaI CTAG 4 cut(s) 251, 291, 486, 567
BfuI GTATCC 1 cut(s) 510
BglI GCCNNNNNGGC 2 cut(s) 119, 167
BisI GCNGC 2 cut(s) 114, 668
BlsI GCNGC 2 cut(s) 115, 669
Bme1390I CCNGG 2 cut(s) 118, 664
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 3 cut(s) 241, 442, 530
BmiI GGNNCC 3 cut(s) 22, 271, 682
BmrFI CCNGG 2 cut(s) 118, 664
BmsI GCATC 2 cut(s) 562, 602
BmtI GCTAGC 1 cut(s) 254
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 213
Bpu10I CCTNAGC 2 cut(s) 141, 354
BpuMI CCSGG 1 cut(s) 664
BsaHI GRCGYC 1 cut(s) 563
BsaJI CCNNGG 1 cut(s) 117
BsaWI WCCGGW 2 cut(s) 277, 502
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 533
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMII CTCAG 8 cut(s) 74, 132, 137, 194, 288, 312, 368, 540
BseNI ACTGG 1 cut(s) 533
BseRI GAGGAG 3 cut(s) 216, 338, 673
BseSI GKGCMC 2 cut(s) 590, 730
BseXI GCAGC 1 cut(s) 654
BseYI CCCAGC 1 cut(s) 736
BshFI GGCC 4 cut(s) 161, 443, 475, 532
BshNI GGYRCC 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 730
BsiSI CCGG 3 cut(s) 278, 503, 664
BslFI GGGAC 1 cut(s) 621
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 3 cut(s) 129, 632, 664
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 621
BsmI GAATGC 1 cut(s) 91
BsnI GGCC 4 cut(s) 161, 443, 475, 532
Bsp1286I GDGCHC 3 cut(s) 124, 590, 730
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 2 cut(s) 114, 170
BspANI GGCC 4 cut(s) 161, 443, 475, 532
BspCNI CTCAG 8 cut(s) 73, 133, 136, 193, 289, 313, 367, 539
BspLI GGNNCC 3 cut(s) 22, 271, 682
BspOI GCTAGC 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 269
BsrI ACTGG 1 cut(s) 533
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 1 cut(s) 63
BssNI GRCGYC 1 cut(s) 563
Bst2UI CCWGG 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 376
BstACI GRCGYC 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 9 cut(s) 60, 123, 141, 180, 237, 297, 321, 354, 526
BstEII GGTNACC 1 cut(s) 310
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 3 cut(s) 129, 632, 664
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 6 cut(s) 119, 167, 176, 350, 449, 708
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 2 cut(s) 250, 467
BstPI GGTNACC 1 cut(s) 310
BstSCI CCNGG 2 cut(s) 116, 662
BstSLI GKGCMC 2 cut(s) 590, 730
BstV1I GCAGC 1 cut(s) 654
BstV2I GAAGAC 1 cut(s) 342
BsuI GTATCC 1 cut(s) 510
BsuRI GGCC 4 cut(s) 161, 443, 475, 532
BtsI GCAGTG 2 cut(s) 588, 709
BtsIMutI CAGTG 5 cut(s) 294, 354, 588, 588, 709
Cac8I GCNNGC 1 cut(s) 252
Cfr13I GGNCC 3 cut(s) 241, 442, 530
CseI GACGC 3 cut(s) 146, 458, 571
CviAII CATG 4 cut(s) 247, 262, 464, 774
DdeI CTNAG 9 cut(s) 60, 123, 141, 180, 237, 297, 321, 354, 526
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
EciI GGCGGA 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 241
Eco57I CTGAAG 3 cut(s) 330, 447, 564
Eco91I GGTNACC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 442
EcoO65I GGTNACC 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 4 cut(s) 250, 265, 467, 777
FaiI YATR 6 cut(s) 248, 263, 389, 465, 636, 775
FaqI GGGAC 1 cut(s) 621
FatI CATG 4 cut(s) 246, 261, 463, 773
Fnu4HI GCNGC 2 cut(s) 114, 668
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 2 cut(s) 114, 668
FspBI CTAG 4 cut(s) 251, 291, 486, 567
GluI GCNGC 2 cut(s) 114, 668
GsaI CCCAGC 1 cut(s) 740
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 4 cut(s) 161, 443, 475, 532
HapII CCGG 3 cut(s) 278, 503, 664
HgaI GACGC 3 cut(s) 146, 458, 571
Hin1I GRCGYC 1 cut(s) 563
Hin1II CATG 4 cut(s) 250, 265, 467, 777
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HindIII AAGCTT 2 cut(s) 14, 342
HinfI GANTC 5 cut(s) 58, 223, 359, 518, 657
HpaII CCGG 3 cut(s) 278, 503, 664
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 4 cut(s) 186, 244, 363, 728
Hpy188I TCNGA 4 cut(s) 63, 95, 126, 697
Hpy188III TCNNGA 2 cut(s) 55, 356
Hpy8I GTNNAC 4 cut(s) 186, 244, 363, 728
Hpy99I CGWCG 1 cut(s) 452
HpyAV CCTTC 3 cut(s) 40, 389, 422
HpyCH4IV ACGT 1 cut(s) 614
HpyCH4V TGCA 3 cut(s) 593, 670, 728
HpyF10VI GCNNNNNNNGC 6 cut(s) 119, 167, 176, 350, 449, 708
HpyF3I CTNAG 9 cut(s) 60, 123, 141, 180, 237, 297, 321, 354, 526
HpySE526I ACGT 1 cut(s) 614
Hsp92I GRCGYC 1 cut(s) 563
Hsp92II CATG 4 cut(s) 250, 265, 467, 777
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 3 cut(s) 20, 220, 686
Lsp1109I GCAGC 1 cut(s) 654
LweI GCATC 2 cut(s) 562, 602
MaeI CTAG 4 cut(s) 251, 291, 486, 567
MaeII ACGT 1 cut(s) 614
MaeIII GTNAC 2 cut(s) 310, 535
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 3 cut(s) 347, 363, 570
MfeI CAATTG 1 cut(s) 153
MhlI GDGCHC 3 cut(s) 124, 590, 730
MluCI AATT 2 cut(s) 153, 174
MlyI GAGTC 5 cut(s) 52, 217, 368, 512, 666
MseI TTAA 1 cut(s) 69
MspI CCGG 3 cut(s) 278, 503, 664
MspR9I CCNGG 2 cut(s) 118, 664
MunI CAATTG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 91
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 6 cut(s) 119, 167, 176, 350, 449, 708
NciI CCSGG 1 cut(s) 664
NdeII GATC 1 cut(s) 63
NheI GCTAGC 1 cut(s) 250
NlaIII CATG 4 cut(s) 250, 265, 467, 777
NlaIV GGNNCC 3 cut(s) 22, 271, 682
NmuCI GTSAC 2 cut(s) 310, 535
NspI RCATGY 2 cut(s) 250, 467
PctI GAATGC 1 cut(s) 91
PkrI GCNGC 2 cut(s) 115, 669
PleI GAGTC 5 cut(s) 52, 217, 367, 512, 665
PpsI GAGTC 5 cut(s) 52, 217, 367, 512, 665
Psp6I CCWGG 1 cut(s) 116
PspEI GGTNACC 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 736
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 22, 271, 682
PspPI GGNCC 3 cut(s) 241, 442, 530
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 2 cut(s) 114, 668
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 3 cut(s) 241, 442, 530
SchI GAGTC 5 cut(s) 52, 217, 368, 512, 666
ScrFI CCNGG 2 cut(s) 118, 664
SduI GDGCHC 3 cut(s) 124, 590, 730
SfaNI GCATC 2 cut(s) 562, 602
SinI GGWCC 1 cut(s) 241
Sse9I AATT 2 cut(s) 153, 174
SsiI CCGC 2 cut(s) 114, 170
SspMI CTAG 4 cut(s) 251, 291, 486, 567
StyD4I CCNGG 2 cut(s) 116, 662
TaiI ACGT 1 cut(s) 617
TaqI TCGA 2 cut(s) 408, 447
TasI AATT 2 cut(s) 153, 174
TauI GCSGC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 5 cut(s) 301, 354, 588, 595, 709
TseFI GTSAC 2 cut(s) 310, 535
TseI GCWGC 1 cut(s) 667
Tsp45I GTSAC 2 cut(s) 310, 535
TspDTI ATGAA 1 cut(s) 250
TspRI CASTG 5 cut(s) 301, 354, 588, 595, 709
VneI GTGCAC 1 cut(s) 726
VpaK11BI GGWCC 1 cut(s) 241
XceI RCATGY 2 cut(s) 250, 467
XspI CTAG 4 cut(s) 251, 291, 486, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.