Rroxscaffold_7G00203610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000949
Physical Location & Seq
Reverse (-)
52508497 .. 52508911
415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00203610.1

Sequence Viewer

Length: 276 bp
ATGTGGCTTGGGCGAAGGCTCTGGGCTTCATGGTTCCTAGAGAGGAGGGCAATGCGTGAGGCTGGTTTCACAGAGCAGCGAACACTTCCCTCTCTTTGCAGTGGAAGGATAACGGGTCGGTGCCTTCGGGATCCACCATGGCCGGCTAGGCTGTTCCATTCGAACCAACACTTTTTTTATTTTTACATCTCGTGTTGTTCTCAATCACATATATTTTGGTTTACTTTGTTATGGATTCTGTTTCCTGGAAGACTCTTTGATACAAATGAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

11.13

Weight (kDa)

9.57

Isoelectric Point (pI)

65.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 120
AclWI GGATC 2 cut(s) 125, 138
AcoI YGGCCR 1 cut(s) 140
AjnI CCWGG 1 cut(s) 244
AlwI GGATC 2 cut(s) 125, 138
AoxI GGCC 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 161
BamHI GGATCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 120
BauI CACGAG 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 246
BfaI CTAG 2 cut(s) 38, 147
BglI GCCNNNNNGGC 1 cut(s) 148
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 246
BmiI GGNNCC 3 cut(s) 35, 122, 132
BmrFI CCNGG 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 256
Bpu14I TTCGAA 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 142
Bse3DI GCAATG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 88
BshFI GGCC 1 cut(s) 142
BshNI GGYRCC 1 cut(s) 120
BsiSI CCGG 1 cut(s) 143
BsnI GGCC 1 cut(s) 142
Bsp119I TTCGAA 1 cut(s) 161
Bsp143I GATC 1 cut(s) 130
Bsp19I CCATGG 1 cut(s) 137
BspANI GGCC 1 cut(s) 142
BspLI GGNNCC 3 cut(s) 35, 122, 132
BspPI GGATC 2 cut(s) 125, 138
BspT104I TTCGAA 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 57
BsrFI RCCGGY 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 1 cut(s) 130
BssSI CACGAG 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 137
Bst2BI CACGAG 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 246
BstBI TTCGAA 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 144
BstDSI CCRYGG 1 cut(s) 137
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 1 cut(s) 142
BtgI CCRYGG 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 144
Cfr10I RCCGGY 1 cut(s) 142
CviAII CATG 2 cut(s) 30, 138
CviJI RGCY 7 cut(s) 7, 19, 26, 62, 142, 146, 151
CviKI_1 RGCY 7 cut(s) 7, 19, 26, 62, 142, 146, 151
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 2 cut(s) 33, 141
FaiI YATR 5 cut(s) 31, 139, 210, 212, 232
FatI CATG 2 cut(s) 29, 137
Fnu4HI GCNGC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 2 cut(s) 38, 147
GluI GCNGC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 142
HapII CCGG 1 cut(s) 143
Hin1II CATG 2 cut(s) 33, 141
HinfI GANTC 2 cut(s) 235, 252
HpaII CCGG 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 222
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 222
HpyAV CCTTC 3 cut(s) 9, 99, 134
HpyCH4V TGCA 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
Hsp92II CATG 2 cut(s) 33, 141
KroI GCCGGC 1 cut(s) 142
KroNI GCCGGC 1 cut(s) 144
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 5 cut(s) 7, 48, 156, 231, 258
Lsp1109I GCAGC 1 cut(s) 88
MaeI CTAG 2 cut(s) 38, 147
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 261
MflI RGATCY 1 cut(s) 130
MlyI GAGTC 1 cut(s) 246
MnlI CCTC 4 cut(s) 36, 39, 52, 100
MroNI GCCGGC 1 cut(s) 142
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 148
NaeI GCCGGC 1 cut(s) 144
NcoI CCATGG 1 cut(s) 137
NdeII GATC 1 cut(s) 130
NgoMIV GCCGGC 1 cut(s) 142
NlaIII CATG 2 cut(s) 33, 141
NlaIV GGNNCC 3 cut(s) 35, 122, 132
NspV TTCGAA 1 cut(s) 161
PdiI GCCGGC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 1 cut(s) 78
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 3 cut(s) 35, 122, 132
PsuI RGATCY 1 cut(s) 130
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 1 cut(s) 130
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 246
SfuI TTCGAA 1 cut(s) 161
SspMI CTAG 2 cut(s) 38, 147
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 137
TaqI TCGA 1 cut(s) 161
TfiI GAWTC 1 cut(s) 235
TscAI CASTG 1 cut(s) 106
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 18
TspRI CASTG 1 cut(s) 106
XspI CTAG 2 cut(s) 38, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.