FvH4_2g25080
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000115
Physical Location & Seq
Reverse (-)
20367355 .. 20371157
3803 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25080.t1

Sequence Viewer

Length: 438 bp
ATGTTGCTAACAACTCGTGCTGAGCTTTTGATGAGGAAGCCTGAGTTGTCCAGTGAACTTGCGAGTCAAGTCCAGCAATTCGGATTTGACCCTCAGAAGTCTGACTTTGTGCAAGCCATGGAGGCATTAAGTAGGAAAGAGACGACATGGAAACGATGTCAAGAGGCTTACAGGAGTTGGGGTTGGTCGGATGATGATATTCTTTCTGCCTTCAAGGTGTGTCCGCTGTGTATGACCAAGTCTGAAAAGAAAATAATGGAGACAATGGATTTCTTGGTGAGCAAGATGGGATGGGAATCAGGAAAAATTGTCAAGATCCCCGAGTATGACGTCAGGGGAGGACTGTATCAGTGTGATGCAGCGAATCTGTTCTCTGAGACTTGGCTGATAGTGCCAATTCCAGAGGCACCACCATTTGATGCTTGGACTTTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

146

Amino Acids

16.7

Weight (kDa)

4.89

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 43 - 109 1.9e-07 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 406
AciI CCGC 1 cut(s) 224
AclWI GGATC 1 cut(s) 310
AcyI GRCGYC 1 cut(s) 330
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw26I GTCTC 3 cut(s) 134, 254, 371
AlwI GGATC 1 cut(s) 310
Ama87I CYCGRG 1 cut(s) 320
ApeKI GCWGC 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 289
AvaI CYCGRG 1 cut(s) 320
BanI GGYRCC 1 cut(s) 406
BauI CACGAG 1 cut(s) 15
BbvI GCAGC 1 cut(s) 371
BccI CCATC 2 cut(s) 280, 285
BcoDI GTCTC 3 cut(s) 134, 254, 371
BglI GCCNNNNNGGC 1 cut(s) 122
BisI GCNGC 1 cut(s) 360
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 361
BmeT110I CYCGRG 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 408
BmsI GCATC 2 cut(s) 346, 409
Bpu1102I GCTNAGC 1 cut(s) 21
BsaBI GATNNNNATC 1 cut(s) 295
BsaHI GRCGYC 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bse1I ACTGG 1 cut(s) 51
Bse8I GATNNNNATC 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 2 cut(s) 196, 296
BseJI GATNNNNATC 1 cut(s) 295
BseMII CTCAG 4 cut(s) 12, 33, 107, 366
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 371
BshNI GGYRCC 1 cut(s) 406
BsiHKCI CYCGRG 1 cut(s) 320
BsmAI GTCTC 3 cut(s) 134, 254, 371
BsmBI CGTCTC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 320
Bsp143I GATC 1 cut(s) 315
Bsp1720I GCTNAGC 1 cut(s) 21
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 1 cut(s) 224
BspCNI CTCAG 4 cut(s) 13, 34, 106, 367
BspLI GGNNCC 1 cut(s) 408
BspPI GGATC 1 cut(s) 310
BspT107I GGYRCC 1 cut(s) 406
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 1 cut(s) 315
BssNI GRCGYC 1 cut(s) 330
BssSI CACGAG 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 345
BstACI GRCGYC 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 4 cut(s) 21, 42, 93, 375
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 196, 296
BstKTI GATC 1 cut(s) 318
BstMAI GTCTC 3 cut(s) 134, 254, 371
BstMBI GATC 1 cut(s) 315
BstMWI GCNNNNNNNGC 2 cut(s) 122, 391
BstV1I GCAGC 1 cut(s) 371
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 2 cut(s) 196, 296
BtsIMutI CAGTG 2 cut(s) 58, 356
Cac8I GCNNGC 1 cut(s) 114
CviAII CATG 2 cut(s) 118, 147
CviJI RGCY 5 cut(s) 25, 40, 116, 167, 385
CviKI_1 RGCY 5 cut(s) 25, 40, 116, 167, 385
DdeI CTNAG 4 cut(s) 21, 42, 93, 375
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 117
Eco88I CYCGRG 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 2 cut(s) 121, 150
FaiI YATR 4 cut(s) 119, 148, 233, 327
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 2 cut(s) 117, 146
Fnu4HI GCNGC 1 cut(s) 360
FokI GGATG 2 cut(s) 203, 303
Fsp4HI GCNGC 1 cut(s) 360
GluI GCNGC 1 cut(s) 360
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 2 cut(s) 121, 150
HinfI GANTC 3 cut(s) 64, 296, 364
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 6 cut(s) 83, 96, 103, 190, 244, 376
Hpy188III TCNNGA 4 cut(s) 161, 300, 313, 401
Hpy8I GTNNAC 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 2 cut(s) 112, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 391
HpyF3I CTNAG 4 cut(s) 21, 42, 93, 375
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 2 cut(s) 121, 150
Kzo9I GATC 1 cut(s) 315
LpnPI CCDG 7 cut(s) 54, 64, 86, 157, 285, 319, 414
Lsp1109I GCAGC 1 cut(s) 371
LweI GCATC 2 cut(s) 346, 409
MaeII ACGT 1 cut(s) 330
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MflI RGATCY 1 cut(s) 315
MluCI AATT 3 cut(s) 77, 306, 396
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 6 cut(s) 27, 102, 115, 157, 332, 397
MroXI GAANNNNTTC 1 cut(s) 368
MseI TTAA 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 226
MwoI GCNNNNNNNGC 2 cut(s) 122, 391
NcoI CCATGG 1 cut(s) 117
NdeII GATC 1 cut(s) 315
NlaIII CATG 2 cut(s) 121, 150
NlaIV GGNNCC 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 368
PfeI GAWTC 2 cut(s) 296, 364
PflFI GACNNNGTC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 361
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 408
PsuI RGATCY 1 cut(s) 315
PsyI GACNNNGTC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 1 cut(s) 315
SchI GAGTC 1 cut(s) 73
SetI ASST 3 cut(s) 27, 219, 333
SfaNI GCATC 2 cut(s) 346, 409
Sse9I AATT 3 cut(s) 77, 306, 396
SsiI CCGC 1 cut(s) 224
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 345
TaiI ACGT 1 cut(s) 333
TasI AATT 3 cut(s) 77, 306, 396
TfiI GAWTC 2 cut(s) 296, 364
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 2 cut(s) 58, 356
TseI GCWGC 1 cut(s) 359
TspRI CASTG 2 cut(s) 58, 356
Tth111I GACNNNGTC 1 cut(s) 238
XcmI CCANNNNNNNNNTGG 1 cut(s) 420
XmnI GAANNNNTTC 1 cut(s) 368
ZraI GACGTC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.