RchiOBHm_Chr6g0285221
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000115
Physical Location & Seq
Reverse (-)
48567195 .. 48568019
825 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25583

Sequence Viewer

Length: 825 bp
ATGACATATTTGCCCTCACACCCAAGAGTCCTTTTAGCTGATCCTGAGAAAACCCTTTCACCTGAGATTGAGTTTCTCAGCTCTGTTGGGCTCTCAAGGGTGGACCTTGCTAGAGTTCTTAGTTTTAATCCATATCTGTTGTCAAGAAGCTTGGAGAATCAGATTGTGCCATCTTATAATTTTCTCAGGAATATGATTTCCCAGAAGAATGTTGTGGCGGTTTTGAAGCGCAAGTCTTGGATGTTCTTGGAGAATCATTCCAGGAATGTGATGCCCAATATTGAGGCTTTGAGAGAGTTAGGTATGCCCAGAGCATGCATTTCTCTGTTGCTTGCTCATGACACCCAAGTGTTGATGCATAATTATGATGAGCTTGTTCAGCTTGTGAATGAGGTCAAGGGGATGAGATTTGATTTGAAGAAGTCAACTTTTGTTGTTGCACTGAGAGCATTGTGTGGGAAGAGCAGTAGGGCCATATGGAATCGAAATCGCGAGATTTACAAGAGGAGTTGGGGTTGGTCTGATGATGATGTTATCTCTGCTTTTAGGAAGAGCCCTCAGTGTATGATTTTGTCTGAGAAGAAGATTATGCAAACAATGGATTTTCTAGTGAATAAGATGGGATGGTCTGCATCAATGATTCCCACACATCCTATAATTTTGTGTTTCAGTTTGGAGAATAGGATCATCCCGAAATGTTCGGTTGTCAAAGTTTTGATGAAGAAAGGATTGGTAGATGAAAAATTAAGTCTGACTGATGTTGATTTGATGGGGATTGGGGAGGAAGAAAAAAGAAAAAAAGATGAAGCAGAATTGCAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

274

Amino Acids

31.51

Weight (kDa)

9.24

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 6 - 126 1.1e-18 mTERF
mTERF PF02536 169 - 254 1.1e-14 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AccII CGCG 1 cut(s) 492
AciI CCGC 1 cut(s) 218
AclWI GGATC 2 cut(s) 35, 692
AgsI TTSAA 2 cut(s) 226, 418
AjnI CCWGG 1 cut(s) 260
AjuI GAANNNNNNNTTGG 2 cut(s) 713, 745
AleI CACNNNNGTG 1 cut(s) 347
AluBI AGCT 5 cut(s) 38, 81, 150, 373, 382
AluI AGCT 5 cut(s) 38, 81, 150, 373, 382
AlwI GGATC 2 cut(s) 35, 692
AoxI GGCC 1 cut(s) 471
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 103, 471
AsuHPI GGTGA 1 cut(s) 51
AvaII GGWCC 1 cut(s) 103
BanII GRGCYC 2 cut(s) 93, 557
BccI CCATC 4 cut(s) 178, 613, 618, 763
BciT130I CCWGG 1 cut(s) 262
BfaI CTAG 2 cut(s) 111, 608
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 103, 471
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 3 cut(s) 261, 345, 641
BpuEI CTTGAG 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
BseBI CCWGG 1 cut(s) 262
BseGI GGATG 5 cut(s) 246, 408, 629, 649, 687
BseMII CTCAG 7 cut(s) 36, 54, 91, 199, 434, 567, 572
BseRI GAGGAG 1 cut(s) 520
Bsh1236I CGCG 1 cut(s) 492
BshFI GGCC 1 cut(s) 473
BsnI GGCC 1 cut(s) 473
Bsp1286I GDGCHC 2 cut(s) 93, 557
Bsp143I GATC 2 cut(s) 40, 684
Bsp68I TCGCGA 1 cut(s) 492
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 473
BspCNI CTCAG 7 cut(s) 37, 55, 90, 198, 435, 568, 571
BspFNI CGCG 1 cut(s) 492
BspHI TCATGA 1 cut(s) 337
BspPI GGATC 2 cut(s) 35, 692
BspQI GCTCTTC 2 cut(s) 455, 545
BssMI GATC 2 cut(s) 40, 684
Bst2UI CCWGG 1 cut(s) 262
Bst6I CTCTTC 2 cut(s) 455, 545
BstC8I GCNNGC 2 cut(s) 316, 333
BstDEI CTNAG 8 cut(s) 45, 63, 77, 119, 185, 443, 558, 576
BstF5I GGATG 5 cut(s) 246, 408, 629, 649, 687
BstFNI CGCG 1 cut(s) 492
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 2 cut(s) 43, 687
BstMBI GATC 2 cut(s) 40, 684
BstMWI GCNNNNNNNGC 2 cut(s) 379, 446
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 260
BstUI CGCG 1 cut(s) 492
BsuRI GGCC 1 cut(s) 473
BtsCI GGATG 5 cut(s) 246, 408, 629, 649, 687
BtsIMutI CAGTG 2 cut(s) 440, 566
BtuMI TCGCGA 1 cut(s) 492
Cac8I GCNNGC 2 cut(s) 316, 333
CciI TCATGA 1 cut(s) 337
CfoI GCGC 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 103, 471
CviAII CATG 2 cut(s) 315, 338
CviJI RGCY 9 cut(s) 38, 81, 91, 150, 287, 373, 382, 473, 555
CviKI_1 RGCY 9 cut(s) 38, 81, 91, 150, 287, 373, 382, 473, 555
DdeI CTNAG 8 cut(s) 45, 63, 77, 119, 185, 443, 558, 576
DpnI GATC 2 cut(s) 42, 686
DpnII GATC 2 cut(s) 40, 684
Eam1104I CTCTTC 2 cut(s) 455, 545
EarI CTCTTC 2 cut(s) 455, 545
Eco24I GRGCYC 2 cut(s) 93, 557
Eco47I GGWCC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 260
EcoT22I ATGCAT 2 cut(s) 320, 360
EcoT38I GRGCYC 2 cut(s) 93, 557
FaeI CATG 2 cut(s) 318, 341
FatI CATG 2 cut(s) 314, 337
FauNDI CATATG 1 cut(s) 476
FokI GGATG 5 cut(s) 253, 415, 636, 636, 674
FriOI GRGCYC 2 cut(s) 93, 557
FspBI CTAG 2 cut(s) 111, 608
GlaI GCGC 1 cut(s) 230
HaeIII GGCC 1 cut(s) 473
HhaI GCGC 1 cut(s) 231
Hin1II CATG 2 cut(s) 318, 341
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HindIII AAGCTT 1 cut(s) 148
HinfI GANTC 5 cut(s) 27, 157, 253, 481, 640
HphI GGTGA 1 cut(s) 51
Hpy166II GTNNAC 2 cut(s) 103, 426
Hpy188I TCNGA 4 cut(s) 162, 523, 577, 753
Hpy188III TCNNGA 6 cut(s) 44, 144, 187, 338, 491, 691
Hpy8I GTNNAC 2 cut(s) 103, 426
HpyCH4V TGCA 6 cut(s) 318, 358, 440, 592, 632, 817
HpyF10VI GCNNNNNNNGC 2 cut(s) 379, 446
HpyF3I CTNAG 8 cut(s) 45, 63, 77, 119, 185, 443, 558, 576
Hsp92II CATG 2 cut(s) 318, 341
HspAI GCGC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 40, 684
LguI GCTCTTC 2 cut(s) 455, 545
LpnPI CCDG 7 cut(s) 57, 75, 172, 215, 247, 274, 322
LweI GCATC 3 cut(s) 261, 345, 641
MaeI CTAG 2 cut(s) 111, 608
MalI GATC 2 cut(s) 42, 686
MboI GATC 2 cut(s) 40, 684
MboII GAAGA 8 cut(s) 217, 430, 472, 562, 592, 595, 733, 797
MhlI GDGCHC 2 cut(s) 93, 557
MluCI AATT 5 cut(s) 178, 361, 657, 743, 812
MlyI GAGTC 1 cut(s) 36
MnlI CCTC 6 cut(s) 25, 277, 385, 498, 567, 775
Mph1103I ATGCAT 2 cut(s) 320, 360
MseI TTAA 2 cut(s) 126, 746
MslI CAYNNNNRTG 2 cut(s) 347, 363
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 2 cut(s) 379, 446
NdeI CATATG 1 cut(s) 476
NdeII GATC 2 cut(s) 40, 684
NlaIII CATG 2 cut(s) 318, 341
NruI TCGCGA 1 cut(s) 492
NsiI ATGCAT 2 cut(s) 320, 360
NspI RCATGY 1 cut(s) 318
OliI CACNNNNGTG 1 cut(s) 347
PaeI GCATGC 1 cut(s) 318
PagI TCATGA 1 cut(s) 337
PciSI GCTCTTC 2 cut(s) 455, 545
PfeI GAWTC 4 cut(s) 157, 253, 481, 640
PfoI TCCNGGA 1 cut(s) 260
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PsiI TTATAA 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PspPI GGNCC 2 cut(s) 103, 471
RruI TCGCGA 1 cut(s) 492
RseI CAYNNNNRTG 2 cut(s) 347, 363
SapI GCTCTTC 2 cut(s) 455, 545
SaqAI TTAA 2 cut(s) 126, 746
Sau3AI GATC 2 cut(s) 40, 684
Sau96I GGNCC 2 cut(s) 103, 471
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 2 cut(s) 93, 557
SetI ASST 9 cut(s) 40, 64, 83, 108, 152, 304, 375, 384, 396
SfaNI GCATC 3 cut(s) 261, 345, 641
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 2 cut(s) 347, 363
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
SphI GCATGC 1 cut(s) 318
Sse9I AATT 5 cut(s) 178, 361, 657, 743, 812
SsiI CCGC 1 cut(s) 218
SspI AATATT 1 cut(s) 280
SspMI CTAG 2 cut(s) 111, 608
StyD4I CCNGG 1 cut(s) 260
TaqI TCGA 1 cut(s) 484
TasI AATT 5 cut(s) 178, 361, 657, 743, 812
TfiI GAWTC 4 cut(s) 157, 253, 481, 640
Tru1I TTAA 2 cut(s) 126, 746
Tru9I TTAA 2 cut(s) 126, 746
TscAI CASTG 2 cut(s) 447, 566
TspDTI ATGAA 3 cut(s) 734, 753, 819
TspRI CASTG 2 cut(s) 447, 566
VpaK11BI GGWCC 1 cut(s) 103
XceI RCATGY 1 cut(s) 318
XspI CTAG 2 cut(s) 111, 608
Zsp2I ATGCAT 2 cut(s) 320, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.