Rorug01G0478600

Calmodulin-like protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
56761052 .. 56761630
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0478600.1

Sequence Viewer

Length: 477 bp
ATGGCATTCGCAACAGACAGCAGGGTTTCCATTATTTTGCTACTAGTACTAGTGCTAGCAGCAGCAGCTCTTGCTCATAATGAAGGTGACGATCATGCAACGCCTCCGATTCGCTCTCCAAATCCGCCATCGCCATCATCAGATGGTTCGGGTTCTGCTGAACCGGAGGGTTTAGTCGATGTAGGTCTATGTGCCATTCAATGTGGTGCTAAGTGTTTTGGTCGCAAGGCATCCCTGATTTCACCGGATAAGTTTCGCTTTCCCAAAATTCATTTTGGTGGAGCTTTTTGTTTTGGTACATGCATGCTAGAGTGCACCATGAACCAGGGGAATGTGAAGCCTGAGCTCTATCATTGTACACTTGGATGTGCTTATAAGTTTGCTGCTAAAACAAAATTAACTGGTTCAGATGCTCATAGAGGAAATAACTATTTGGGTCCTTGCTACAACAAGTGCGAGAAGAACCATCAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

158

Amino Acids

16.75

Weight (kDa)

8.04

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AciI CCGC 1 cut(s) 125
AcsI RAATTY 1 cut(s) 267
AfaI GTAC 3 cut(s) 48, 298, 358
AgsI TTSAA 1 cut(s) 200
AhlI ACTAGT 2 cut(s) 43, 49
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 3 cut(s) 68, 284, 346
AluI AGCT 3 cut(s) 68, 284, 346
Alw21I GWGCWC 2 cut(s) 317, 348
Alw44I GTGCAC 1 cut(s) 313
ApaLI GTGCAC 1 cut(s) 313
ApeKI GCWGC 4 cut(s) 59, 62, 65, 383
ApoI RAATTY 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 2 cut(s) 98, 234
AsuNHI GCTAGC 1 cut(s) 55
AvaII GGWCC 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 317
BanII GRGCYC 1 cut(s) 348
Bbv12I GWGCWC 2 cut(s) 317, 348
BbvI GCAGC 4 cut(s) 71, 74, 77, 370
BccI CCATC 4 cut(s) 136, 137, 142, 474
BciT130I CCWGG 1 cut(s) 326
BcuI ACTAGT 2 cut(s) 43, 49
BfaI CTAG 4 cut(s) 44, 50, 56, 308
BisI GCNGC 4 cut(s) 60, 63, 66, 384
BlsI GCNGC 4 cut(s) 61, 64, 67, 385
BmcAI AGTACT 1 cut(s) 48
Bme1390I CCNGG 1 cut(s) 326
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 1 cut(s) 326
BmsI GCATC 2 cut(s) 239, 400
BmtI GCTAGC 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 325
BsaWI WCCGGW 2 cut(s) 163, 244
Bse1I ACTGG 1 cut(s) 406
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 1 cut(s) 325
BseGI GGATG 2 cut(s) 230, 371
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 1 cut(s) 406
BseSI GKGCMC 1 cut(s) 317
BseXI GCAGC 4 cut(s) 71, 74, 77, 370
BsiHKAI GWGCWC 2 cut(s) 317, 348
BsiSI CCGG 2 cut(s) 164, 245
BsmI GAATGC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 317, 348
Bsp1407I TGTACA 1 cut(s) 356
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 438
BspOI GCTAGC 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 356
BsrI ACTGG 1 cut(s) 406
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 326
BstAPI GCANNNNNTGC 1 cut(s) 71
BstAUI TGTACA 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 57, 305
BstDEI CTNAG 2 cut(s) 210, 342
BstF5I GGATG 2 cut(s) 230, 371
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 65, 71
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 2 cut(s) 303, 307
BstSCI CCNGG 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 317
BstV1I GCAGC 4 cut(s) 71, 74, 77, 370
BtgZI GCGATG 1 cut(s) 114
BtsCI GGATG 2 cut(s) 230, 371
Cac8I GCNNGC 2 cut(s) 57, 305
Cfr13I GGNCC 1 cut(s) 437
Csp6I GTAC 3 cut(s) 47, 297, 357
CviAII CATG 4 cut(s) 95, 300, 304, 319
CviJI RGCY 4 cut(s) 68, 284, 340, 346
CviKI_1 RGCY 4 cut(s) 68, 284, 340, 346
CviQI GTAC 3 cut(s) 47, 297, 357
DdeI CTNAG 2 cut(s) 210, 342
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
EciI GGCGGA 1 cut(s) 114
Ecl136II GAGCTC 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 346
EcoO109I RGGNCCY 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 348
FaeI CATG 4 cut(s) 98, 303, 307, 322
FaiI YATR 8 cut(s) 78, 96, 190, 301, 305, 320, 375, 417
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FatI CATG 4 cut(s) 94, 299, 303, 318
Fnu4HI GCNGC 4 cut(s) 60, 63, 66, 384
FokI GGATG 2 cut(s) 217, 378
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 4 cut(s) 60, 63, 66, 384
FspBI CTAG 4 cut(s) 44, 50, 56, 308
GluI GCNGC 4 cut(s) 60, 63, 66, 384
HapII CCGG 2 cut(s) 164, 245
Hin1II CATG 4 cut(s) 98, 303, 307, 322
HinfI GANTC 1 cut(s) 109
HpaII CCGG 2 cut(s) 164, 245
HphI GGTGA 2 cut(s) 98, 234
Hpy166II GTNNAC 2 cut(s) 315, 359
Hpy188I TCNGA 3 cut(s) 108, 142, 409
Hpy8I GTNNAC 2 cut(s) 315, 359
HpyAV CCTTC 1 cut(s) 77
HpyCH4V TGCA 3 cut(s) 98, 303, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 71
HpyF3I CTNAG 2 cut(s) 210, 342
Hsp92II CATG 4 cut(s) 98, 303, 307, 322
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 281
LpnPI CCDG 8 cut(s) 7, 177, 248, 258, 311, 338, 354, 387
Lsp1109I GCAGC 4 cut(s) 71, 74, 77, 370
LweI GCATC 2 cut(s) 239, 400
MaeI CTAG 4 cut(s) 44, 50, 56, 308
MaeIII GTNAC 1 cut(s) 86
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 1 cut(s) 472
MhlI GDGCHC 2 cut(s) 317, 348
MluCI AATT 2 cut(s) 267, 395
MnlI CCTC 3 cut(s) 114, 160, 413
Mph1103I ATGCAT 1 cut(s) 305
MseI TTAA 1 cut(s) 398
MslI CAYNNNNRTG 2 cut(s) 276, 364
MspI CCGG 2 cut(s) 164, 245
MspR9I CCNGG 1 cut(s) 326
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 2 cut(s) 65, 71
NdeII GATC 1 cut(s) 91
NheI GCTAGC 1 cut(s) 55
NlaIII CATG 4 cut(s) 98, 303, 307, 322
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 86
NsiI ATGCAT 1 cut(s) 305
NspI RCATGY 2 cut(s) 303, 307
PaeI GCATGC 1 cut(s) 307
PctI GAATGC 1 cut(s) 5
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 4 cut(s) 61, 64, 67, 385
PpuMI RGGWCCY 1 cut(s) 437
PsiI TTATAA 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 437
PspPPI RGGWCCY 1 cut(s) 437
RsaI GTAC 3 cut(s) 48, 298, 358
RsaNI GTAC 3 cut(s) 47, 297, 357
RseI CAYNNNNRTG 2 cut(s) 276, 364
SacI GAGCTC 1 cut(s) 348
SaqAI TTAA 1 cut(s) 398
SatI GCNGC 4 cut(s) 60, 63, 66, 384
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 437
ScaI AGTACT 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 2 cut(s) 317, 348
SetI ASST 6 cut(s) 70, 88, 187, 286, 348, 475
SfaNI GCATC 2 cut(s) 239, 400
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 2 cut(s) 276, 364
SpeI ACTAGT 2 cut(s) 43, 49
SphI GCATGC 1 cut(s) 307
Sse9I AATT 2 cut(s) 267, 395
SsiI CCGC 1 cut(s) 125
SspMI CTAG 4 cut(s) 44, 50, 56, 308
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 324
TaqI TCGA 1 cut(s) 177
TasI AATT 2 cut(s) 267, 395
TatI WGTACW 2 cut(s) 46, 356
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 4 cut(s) 59, 62, 65, 383
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 3 cut(s) 96, 260, 335
VneI GTGCAC 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 1 cut(s) 267
XceI RCATGY 2 cut(s) 303, 307
XspI CTAG 4 cut(s) 44, 50, 56, 308
ZrmI AGTACT 1 cut(s) 48
Zsp2I ATGCAT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.