mTERF
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 504 |
| Acc65I | GGTACC | 1 cut(s) | 7 |
| AccB1I | GGYRCC | 1 cut(s) | 7 |
| AciI | CCGC | 2 cut(s) | 832, 1103 |
| AclWI | GGATC | 2 cut(s) | 138, 362 |
| AcsI | RAATTY | 2 cut(s) | 441, 822 |
| AcuI | CTGAAG | 3 cut(s) | 572, 942, 1057 |
| AfaI | GTAC | 2 cut(s) | 9, 61 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 37 |
| AgsI | TTSAA | 5 cut(s) | 25, 48, 125, 423, 1051 |
| AjnI | CCWGG | 1 cut(s) | 268 |
| AluBI | AGCT | 9 cut(s) | 21, 77, 365, 394, 408, 477, 613, 662, 710 |
| AluI | AGCT | 9 cut(s) | 21, 77, 365, 394, 408, 477, 613, 662, 710 |
| Alw26I | GTCTC | 2 cut(s) | 90, 868 |
| AlwI | GGATC | 2 cut(s) | 138, 362 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 281 |
| AoxI | GGCC | 1 cut(s) | 288 |
| ApeKI | GCWGC | 2 cut(s) | 704, 707 |
| ApoI | RAATTY | 2 cut(s) | 441, 822 |
| Asp718I | GGTACC | 1 cut(s) | 7 |
| AspLEI | GCGC | 2 cut(s) | 230, 558 |
| AspS9I | GGNCC | 2 cut(s) | 289, 598 |
| AsuC2I | CCSGG | 1 cut(s) | 575 |
| AsuHPI | GGTGA | 2 cut(s) | 142, 258 |
| AvaII | GGWCC | 1 cut(s) | 598 |
| BanI | GGYRCC | 1 cut(s) | 7 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 52, 84 |
| BbsI | GAAGAC | 3 cut(s) | 435, 1074, 1074 |
| BbvI | GCAGC | 2 cut(s) | 691, 719 |
| BccI | CCATC | 2 cut(s) | 155, 940 |
| BceAI | ACGGC | 1 cut(s) | 801 |
| BciT130I | CCWGG | 1 cut(s) | 270 |
| BcnI | CCSGG | 1 cut(s) | 575 |
| BcoDI | GTCTC | 2 cut(s) | 90, 868 |
| BfmI | CTRYAG | 2 cut(s) | 16, 705 |
| BglII | AGATCT | 1 cut(s) | 324 |
| BisI | GCNGC | 2 cut(s) | 705, 708 |
| BlsI | GCNGC | 2 cut(s) | 706, 709 |
| Bme1390I | CCNGG | 2 cut(s) | 270, 575 |
| Bme18I | GGWCC | 1 cut(s) | 598 |
| BmgT120I | GGNCC | 2 cut(s) | 289, 598 |
| BmiI | GGNNCC | 2 cut(s) | 9, 600 |
| BmrFI | CCNGG | 2 cut(s) | 270, 575 |
| BpiI | GAAGAC | 3 cut(s) | 435, 1074, 1074 |
| BpuEI | CTTGAG | 1 cut(s) | 416 |
| BpuMI | CCSGG | 1 cut(s) | 575 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1167 |
| BsaI | GGTCTC | 2 cut(s) | 90, 868 |
| BsaJI | CCNNGG | 1 cut(s) | 528 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 826, 856 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 37 |
| Bse3DI | GCAATG | 2 cut(s) | 645, 735 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1167 |
| BseBI | CCWGG | 1 cut(s) | 270 |
| BseDI | CCNNGG | 1 cut(s) | 528 |
| BseGI | GGATG | 4 cut(s) | 239, 1168, 1189, 1198 |
| BseJI | GATNNNNATC | 1 cut(s) | 1167 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 37 |
| BseMI | GCAATG | 2 cut(s) | 645, 735 |
| BseMII | CTCAG | 6 cut(s) | 46, 177, 363, 526, 663, 894 |
| BseXI | GCAGC | 2 cut(s) | 691, 719 |
| BshFI | GGCC | 1 cut(s) | 290 |
| BshNI | GGYRCC | 1 cut(s) | 7 |
| BsiSI | CCGG | 1 cut(s) | 574 |
| BslFI | GGGAC | 2 cut(s) | 202, 584 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 37 |
| BsmAI | GTCTC | 2 cut(s) | 90, 868 |
| BsmFI | GGGAC | 2 cut(s) | 202, 584 |
| BsmI | GAATGC | 1 cut(s) | 869 |
| BsnI | GGCC | 1 cut(s) | 290 |
| Bso31I | GGTCTC | 2 cut(s) | 90, 868 |
| Bsp1407I | TGTACA | 1 cut(s) | 59 |
| Bsp143I | GATC | 3 cut(s) | 143, 324, 367 |
| BspACI | CCGC | 2 cut(s) | 832, 1103 |
| BspANI | GGCC | 1 cut(s) | 290 |
| BspCNI | CTCAG | 6 cut(s) | 45, 176, 364, 525, 664, 895 |
| BspLI | GGNNCC | 2 cut(s) | 9, 600 |
| BspMAI | CTGCAG | 1 cut(s) | 709 |
| BspPI | GGATC | 2 cut(s) | 138, 362 |
| BspT107I | GGYRCC | 1 cut(s) | 7 |
| BspTNI | GGTCTC | 2 cut(s) | 90, 868 |
| BsrDI | GCAATG | 2 cut(s) | 645, 735 |
| BsrGI | TGTACA | 1 cut(s) | 59 |
| BssECI | CCNNGG | 1 cut(s) | 528 |
| BssMI | GATC | 3 cut(s) | 143, 324, 367 |
| Bst2UI | CCWGG | 1 cut(s) | 270 |
| Bst4CI | ACNGT | 2 cut(s) | 187, 888 |
| Bst6I | CTCTTC | 3 cut(s) | 126, 711, 1001 |
| BstAUI | TGTACA | 1 cut(s) | 59 |
| BstDEI | CTNAG | 7 cut(s) | 32, 163, 372, 512, 672, 770, 903 |
| BstF5I | GGATG | 4 cut(s) | 239, 1168, 1189, 1198 |
| BstHHI | GCGC | 2 cut(s) | 230, 558 |
| BstKTI | GATC | 3 cut(s) | 146, 327, 370 |
| BstMAI | GTCTC | 2 cut(s) | 90, 868 |
| BstMBI | GATC | 3 cut(s) | 143, 324, 367 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 74, 773, 1102 |
| BstNI | CCWGG | 1 cut(s) | 270 |
| BstSCI | CCNGG | 2 cut(s) | 268, 573 |
| BstSFI | CTRYAG | 2 cut(s) | 16, 705 |
| BstV1I | GCAGC | 2 cut(s) | 691, 719 |
| BstV2I | GAAGAC | 3 cut(s) | 435, 1074, 1074 |
| BstX2I | RGATCY | 2 cut(s) | 143, 324 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1158 |
| BstYI | RGATCY | 2 cut(s) | 143, 324 |
| BsuRI | GGCC | 1 cut(s) | 290 |
| BtsCI | GGATG | 4 cut(s) | 239, 1168, 1189, 1198 |
| BtsIMutI | CAGTG | 2 cut(s) | 669, 893 |
| CaiI | CAGNNNCTG | 1 cut(s) | 281 |
| CfoI | GCGC | 2 cut(s) | 230, 558 |
| Cfr13I | GGNCC | 2 cut(s) | 289, 598 |
| Csp6I | GTAC | 2 cut(s) | 8, 60 |
| CviAII | CATG | 5 cut(s) | 207, 564, 642, 692, 892 |
| CviQI | GTAC | 2 cut(s) | 8, 60 |
| DdeI | CTNAG | 7 cut(s) | 32, 163, 372, 512, 672, 770, 903 |
| DpnI | GATC | 3 cut(s) | 145, 326, 369 |
| DpnII | GATC | 3 cut(s) | 143, 324, 367 |
| Eam1104I | CTCTTC | 3 cut(s) | 126, 711, 1001 |
| EarI | CTCTTC | 3 cut(s) | 126, 711, 1001 |
| Eco31I | GGTCTC | 2 cut(s) | 90, 868 |
| Eco47I | GGWCC | 1 cut(s) | 598 |
| Eco57I | CTGAAG | 3 cut(s) | 572, 942, 1057 |
| EcoRI | GAATTC | 1 cut(s) | 441 |
| EcoRII | CCWGG | 1 cut(s) | 268 |
| EcoT22I | ATGCAT | 1 cut(s) | 647 |
| FaeI | CATG | 5 cut(s) | 210, 567, 645, 695, 895 |
| FaqI | GGGAC | 2 cut(s) | 202, 584 |
| FatI | CATG | 5 cut(s) | 206, 563, 641, 691, 891 |
| FauNDI | CATATG | 1 cut(s) | 803 |
| Fnu4HI | GCNGC | 2 cut(s) | 705, 708 |
| FokI | GGATG | 3 cut(s) | 226, 1175, 1196 |
| Fsp4HI | GCNGC | 2 cut(s) | 705, 708 |
| GlaI | GCGC | 2 cut(s) | 229, 557 |
| GluI | GCNGC | 2 cut(s) | 705, 708 |
| HaeIII | GGCC | 1 cut(s) | 290 |
| HapII | CCGG | 1 cut(s) | 574 |
| HhaI | GCGC | 2 cut(s) | 230, 558 |
| Hin1II | CATG | 5 cut(s) | 210, 567, 645, 695, 895 |
| Hin6I | GCGC | 2 cut(s) | 228, 556 |
| HinP1I | GCGC | 2 cut(s) | 228, 556 |
| HindIII | AAGCTT | 2 cut(s) | 392, 475 |
| HinfI | GANTC | 5 cut(s) | 278, 309, 484, 517, 880 |
| HpaII | CCGG | 1 cut(s) | 574 |
| HphI | GGTGA | 2 cut(s) | 142, 258 |
| Hpy166II | GTNNAC | 1 cut(s) | 940 |
| Hpy188I | TCNGA | 8 cut(s) | 35, 316, 489, 522, 529, 552, 850, 904 |
| Hpy188III | TCNNGA | 5 cut(s) | 371, 514, 679, 874, 960 |
| Hpy8I | GTNNAC | 1 cut(s) | 940 |
| HpyAV | CCTTC | 2 cut(s) | 218, 1045 |
| HpyCH4III | ACNGT | 2 cut(s) | 187, 888 |
| HpyCH4IV | ACGT | 1 cut(s) | 537 |
| HpyCH4V | TGCA | 5 cut(s) | 259, 645, 707, 869, 891 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 74, 773, 1102 |
| HpyF3I | CTNAG | 7 cut(s) | 32, 163, 372, 512, 672, 770, 903 |
| HpySE526I | ACGT | 1 cut(s) | 537 |
| Hsp92II | CATG | 5 cut(s) | 210, 567, 645, 695, 895 |
| HspAI | GCGC | 2 cut(s) | 228, 556 |
| KpnI | GGTACC | 1 cut(s) | 11 |
| Kzo9I | GATC | 3 cut(s) | 143, 324, 367 |
| LmnI | GCTCC | 1 cut(s) | 272 |
| Lsp1109I | GCAGC | 2 cut(s) | 691, 719 |
| MaeII | ACGT | 1 cut(s) | 537 |
| MaeIII | GTNAC | 2 cut(s) | 342, 1126 |
| MalI | GATC | 3 cut(s) | 145, 326, 369 |
| MboI | GATC | 3 cut(s) | 143, 324, 367 |
| MflI | RGATCY | 2 cut(s) | 143, 324 |
| MlyI | GAGTC | 3 cut(s) | 272, 303, 526 |
| MmeI | TCCRAC | 1 cut(s) | 73 |
| Mph1103I | ATGCAT | 1 cut(s) | 647 |
| MseI | TTAA | 4 cut(s) | 453, 470, 723, 1035 |
| MslI | CAYNNNNRTG | 3 cut(s) | 244, 690, 896 |
| MspA1I | CMGCKG | 1 cut(s) | 710 |
| MspI | CCGG | 1 cut(s) | 574 |
| MspR9I | CCNGG | 2 cut(s) | 270, 575 |
| Mva1269I | GAATGC | 1 cut(s) | 869 |
| MvaI | CCWGG | 1 cut(s) | 270 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 74, 773, 1102 |
| NciI | CCSGG | 1 cut(s) | 575 |
| NdeI | CATATG | 1 cut(s) | 803 |
| NdeII | GATC | 3 cut(s) | 143, 324, 367 |
| NlaIII | CATG | 5 cut(s) | 210, 567, 645, 695, 895 |
| NlaIV | GGNNCC | 2 cut(s) | 9, 600 |
| NmuCI | GTSAC | 2 cut(s) | 342, 1126 |
| NsiI | ATGCAT | 1 cut(s) | 647 |
| PctI | GAATGC | 1 cut(s) | 869 |
| PfeI | GAWTC | 2 cut(s) | 484, 880 |
| PflFI | GACNNNGTC | 1 cut(s) | 898 |
| PfoI | TCCNGGA | 1 cut(s) | 573 |
| PkrI | GCNGC | 2 cut(s) | 706, 709 |
| PleI | GAGTC | 3 cut(s) | 272, 303, 525 |
| PpsI | GAGTC | 3 cut(s) | 272, 303, 525 |
| PsiI | TTATAA | 1 cut(s) | 504 |
| Psp6I | CCWGG | 1 cut(s) | 268 |
| PspGI | CCWGG | 1 cut(s) | 268 |
| PspN4I | GGNNCC | 2 cut(s) | 9, 600 |
| PspPI | GGNCC | 2 cut(s) | 289, 598 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 531, 563 |
| PstI | CTGCAG | 1 cut(s) | 709 |
| PstNI | CAGNNNCTG | 1 cut(s) | 281 |
| PsuI | RGATCY | 2 cut(s) | 143, 324 |
| PsyI | GACNNNGTC | 1 cut(s) | 898 |
| PvuII | CAGCTG | 1 cut(s) | 710 |
| RsaI | GTAC | 2 cut(s) | 9, 61 |
| RsaNI | GTAC | 2 cut(s) | 8, 60 |
| RseI | CAYNNNNRTG | 3 cut(s) | 244, 690, 896 |
| SaqAI | TTAA | 4 cut(s) | 453, 470, 723, 1035 |
| SatI | GCNGC | 2 cut(s) | 705, 708 |
| Sau3AI | GATC | 3 cut(s) | 143, 324, 367 |
| Sau96I | GGNCC | 2 cut(s) | 289, 598 |
| SchI | GAGTC | 3 cut(s) | 272, 303, 526 |
| ScrFI | CCNGG | 2 cut(s) | 270, 575 |
| SfcI | CTRYAG | 2 cut(s) | 16, 705 |
| SinI | GGWCC | 1 cut(s) | 598 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 244, 690, 896 |
| SmlI | CTYRAG | 1 cut(s) | 395 |
| SmoI | CTYRAG | 1 cut(s) | 395 |
| SsiI | CCGC | 2 cut(s) | 832, 1103 |
| SspI | AATATT | 1 cut(s) | 607 |
| StyD4I | CCNGG | 2 cut(s) | 268, 573 |
| TaaI | ACNGT | 2 cut(s) | 187, 888 |
| TaiI | ACGT | 1 cut(s) | 540 |
| TatI | WGTACW | 1 cut(s) | 59 |
| TfiI | GAWTC | 2 cut(s) | 484, 880 |
| Tru1I | TTAA | 4 cut(s) | 453, 470, 723, 1035 |
| Tru9I | TTAA | 4 cut(s) | 453, 470, 723, 1035 |
| TscAI | CASTG | 2 cut(s) | 676, 893 |
| TseFI | GTSAC | 2 cut(s) | 342, 1126 |
| TseI | GCWGC | 2 cut(s) | 704, 707 |
| Tsp45I | GTSAC | 2 cut(s) | 342, 1126 |
| TspDTI | ATGAA | 4 cut(s) | 552, 708, 758, 1080 |
| TspRI | CASTG | 2 cut(s) | 676, 893 |
| Tth111I | GACNNNGTC | 1 cut(s) | 898 |
| VpaK11BI | GGWCC | 1 cut(s) | 598 |
| XapI | RAATTY | 2 cut(s) | 441, 822 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 979 |
| Zsp2I | ATGCAT | 1 cut(s) | 647 |