FvH4_3g16800
ERF Family

termination of mitochondrial transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000115
Physical Location & Seq
Forward (+)
10622452 .. 10625143
2692 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g16800.t1

Sequence Viewer

Length: 687 bp
ATGATACACCTCCTTGATGAACACATACATGTAGCTGAAAGAGATGGGCAACCAATGGAGGGATTGGCTTCACATTTTGGTTTTGAAAAGCAGTTGTTCAGTACAAGAGTGATTTCCCCAACGGGCCAAGACGGTTGTATAGTCTCCTATCTGGTGAACTCGTGTGGATTGTCCCTAGAAGCCGCTACTCTAGTATCTCACAAGCCACGGATTCTGGTAGCCGATGCCCAGAAAACCCTTTTGCCAAAGCTTGAGTTTTTAAGCTCCATAAGAATGTCAAGGCTGGACCTTGCAAATACACTCAGCCATGACCCATGTGAAAATCTAACCAAGAATGTGATACCCAATTTTGAGCTTGTGAGGGAATTGGGCATGCCCCAGTCATGTATTGTATTGTTGCTAACCATATATCCTATCGTGTTGAGGAAGCCTGAATTGTTTAGTCAACTTGTGGCTGAAGTTGAACAATGGGGATTTGACCCTCAAAAGTCGAGCTTTGTGCTAGCTATGAATGCATTATGTAGAAAAGAGACGACATGGAAACGATGTCATCAAGCTTATAGGAGGTGGGGTTGGTCGGACAATGATATTGTTGCTGCCTTCAGGATGGATCCACTGTGTATGATTTTATCGGAGAAGAAAATAATGGCAACAATGGATTTCTTTGTGAACAAGATGGGGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

229

Amino Acids

25.97

Weight (kDa)

6.65

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 183
AclWI GGATC 2 cut(s) 605, 618
AcuI CTGAAG 2 cut(s) 477, 586
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 2 cut(s) 86, 464
AluBI AGCT 7 cut(s) 35, 250, 264, 355, 495, 506, 557
AluI AGCT 7 cut(s) 35, 250, 264, 355, 495, 506, 557
Alw26I GTCTC 2 cut(s) 148, 524
AlwI GGATC 2 cut(s) 605, 618
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 596
AspS9I GGNCC 2 cut(s) 124, 286
AsuHPI GGTGA 1 cut(s) 166
AsuNHI GCTAGC 1 cut(s) 502
AvaII GGWCC 1 cut(s) 286
BaeI ACNNNNGTAYC 2 cut(s) 177, 210
BamHI GGATCC 1 cut(s) 610
BauI CACGAG 1 cut(s) 160
BbvI GCAGC 1 cut(s) 583
BccI CCATC 3 cut(s) 38, 601, 670
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BcoDI GTCTC 2 cut(s) 148, 524
BfaI CTAG 3 cut(s) 176, 191, 503
BisI GCNGC 2 cut(s) 183, 597
BlsI GCNGC 2 cut(s) 184, 598
Bme18I GGWCC 1 cut(s) 286
BmgT120I GGNCC 2 cut(s) 124, 286
BmiI GGNNCC 1 cut(s) 612
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 214
BmtI GCTAGC 1 cut(s) 506
BmuI ACTGGG 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 556, 586
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 612
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 316
BseNI ACTGG 1 cut(s) 379
BseXI GCAGC 1 cut(s) 583
BshFI GGCC 1 cut(s) 126
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 2 cut(s) 148, 524
BsmBI CGTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 157
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 610
BspACI CCGC 1 cut(s) 183
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 612
BspOI GCTAGC 1 cut(s) 506
BspPI GGATC 2 cut(s) 605, 618
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 1 cut(s) 610
BssSI CACGAG 1 cut(s) 160
Bst2BI CACGAG 1 cut(s) 160
Bst4CI ACNGT 2 cut(s) 134, 618
BstC8I GCNNGC 2 cut(s) 374, 504
BstDEI CTNAG 1 cut(s) 302
BstDSI CCRYGG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 612
BstKTI GATC 1 cut(s) 613
BstMAI GTCTC 2 cut(s) 148, 524
BstMBI GATC 1 cut(s) 610
BstMWI GCNNNNNNNGC 1 cut(s) 512
BstNSI RCATGY 2 cut(s) 32, 376
BstV1I GCAGC 1 cut(s) 583
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
BsuRI GGCC 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 1 cut(s) 612
BtsIMutI CAGTG 1 cut(s) 614
Cac8I GCNNGC 2 cut(s) 374, 504
Cfr13I GGNCC 2 cut(s) 124, 286
Csp6I GTAC 1 cut(s) 102
CviAII CATG 6 cut(s) 29, 308, 315, 373, 384, 537
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 302
DpnI GATC 1 cut(s) 612
DpnII GATC 1 cut(s) 610
Eco47I GGWCC 1 cut(s) 286
Eco57I CTGAAG 2 cut(s) 477, 586
EcoT22I ATGCAT 1 cut(s) 517
Esp3I CGTCTC 1 cut(s) 524
FaeI CATG 6 cut(s) 32, 311, 318, 376, 387, 540
FalI AAGNNNNNCTT 2 cut(s) 479, 511
FaqI GGGAC 1 cut(s) 157
FatI CATG 6 cut(s) 28, 307, 314, 372, 383, 536
Fnu4HI GCNGC 2 cut(s) 183, 597
FokI GGATG 1 cut(s) 619
Fsp4HI GCNGC 2 cut(s) 183, 597
FspBI CTAG 3 cut(s) 176, 191, 503
GluI GCNGC 2 cut(s) 183, 597
HaeIII GGCC 1 cut(s) 126
Hin1II CATG 6 cut(s) 32, 311, 318, 376, 387, 540
HincII GTYRAC 1 cut(s) 446
HindII GTYRAC 1 cut(s) 446
HindIII AAGCTT 2 cut(s) 248, 555
HinfI GANTC 1 cut(s) 211
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 3 cut(s) 157, 446, 670
Hpy188I TCNGA 2 cut(s) 580, 634
Hpy188III TCNNGA 1 cut(s) 604
Hpy8I GTNNAC 3 cut(s) 157, 446, 670
HpyAV CCTTC 1 cut(s) 610
HpyCH4III ACNGT 2 cut(s) 134, 618
HpyCH4V TGCA 2 cut(s) 293, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 512
HpyF3I CTNAG 1 cut(s) 302
Hsp92II CATG 6 cut(s) 32, 311, 318, 376, 387, 540
Kzo9I GATC 1 cut(s) 610
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 7 cut(s) 137, 200, 242, 269, 392, 444, 589
Lsp1109I GCAGC 1 cut(s) 583
LweI GCATC 1 cut(s) 214
MaeI CTAG 3 cut(s) 176, 191, 503
MalI GATC 1 cut(s) 612
MboI GATC 1 cut(s) 610
MboII GAAGA 1 cut(s) 649
MflI RGATCY 1 cut(s) 610
MluCI AATT 3 cut(s) 346, 365, 434
MmeI TCCRAC 1 cut(s) 558
MnlI CCTC 6 cut(s) 20, 52, 354, 417, 492, 558
Mph1103I ATGCAT 1 cut(s) 517
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 2 cut(s) 27, 272
Mva1269I GAATGC 1 cut(s) 517
MwoI GCNNNNNNNGC 1 cut(s) 512
NdeII GATC 1 cut(s) 610
NheI GCTAGC 1 cut(s) 502
NlaIII CATG 6 cut(s) 32, 311, 318, 376, 387, 540
NlaIV GGNNCC 1 cut(s) 612
NsiI ATGCAT 1 cut(s) 517
NspI RCATGY 2 cut(s) 32, 376
PaeI GCATGC 1 cut(s) 376
PciI ACATGT 1 cut(s) 28
PctI GAATGC 1 cut(s) 517
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 2 cut(s) 184, 598
PscI ACATGT 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 612
PspPI GGNCC 2 cut(s) 124, 286
PsuI RGATCY 1 cut(s) 610
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
RseI CAYNNNNRTG 2 cut(s) 27, 272
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 2 cut(s) 183, 597
Sau3AI GATC 1 cut(s) 610
Sau96I GGNCC 2 cut(s) 124, 286
SfaNI GCATC 1 cut(s) 214
SinI GGWCC 1 cut(s) 286
SmiMI CAYNNNNRTG 2 cut(s) 27, 272
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
SphI GCATGC 1 cut(s) 376
Sse9I AATT 3 cut(s) 346, 365, 434
SsiI CCGC 1 cut(s) 183
SspMI CTAG 3 cut(s) 176, 191, 503
TaaI ACNGT 2 cut(s) 134, 618
TaqI TCGA 1 cut(s) 491
TasI AATT 3 cut(s) 346, 365, 434
TatI WGTACW 1 cut(s) 101
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 1 cut(s) 621
TseI GCWGC 1 cut(s) 596
TspDTI ATGAA 2 cut(s) 33, 524
TspGWI ACGGA 1 cut(s) 223
TspRI CASTG 1 cut(s) 621
VpaK11BI GGWCC 1 cut(s) 286
XceI RCATGY 2 cut(s) 32, 376
XspI CTAG 3 cut(s) 176, 191, 503
Zsp2I ATGCAT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.