Rh1CG068800
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
14216267 .. 14216745
479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG068800.1

Sequence Viewer

Length: 357 bp
ATGGAATTTCTCTGCACTCGCATCATTACCTCACAAGATGAGAATTTCACAGTGAATTACTTGATAAACTCATGCGGGTTATCACCGGAAGGAGCAATTTCAGCATCCAAGCGGGTCAAGTTGCGATCCGCAGCAAGAGCAGACTCCGTTTTGGCCCATTTCAGAAAGCATGGCTTCTCTGAAACCCAGATCGCTCAGGTTATTAGGTCATGCCCACAATTTCTTACTGCTGATTTTGAGAAATCCGTTTTGCCAAAGCTCGAGTATTTCAGCTCTGTTGGACTTTCAAGGCAGGACCTTGCCAAAACTATGGCTTTAACTCCAAAGCTTGGAGAAACGCATTATACCGATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.12

Weight (kDa)

8.51

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 52 - 109 6.1e-10 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 329
AciI CCGC 3 cut(s) 75, 112, 129
AclWI GGATC 1 cut(s) 120
AcsI RAATTY 2 cut(s) 5, 43
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 1 cut(s) 288
AluBI AGCT 3 cut(s) 259, 273, 328
AluI AGCT 3 cut(s) 259, 273, 328
AlwI GGATC 1 cut(s) 120
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 2 cut(s) 5, 43
AspS9I GGNCC 2 cut(s) 154, 295
AsuHPI GGTGA 1 cut(s) 75
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 1 cut(s) 295
BbvI GCAGC 1 cut(s) 143
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 154, 295
BmsI GCATC 2 cut(s) 30, 113
Bpu10I CCTNAGC 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 85
Bsc4I CCNNNNNNNGG 1 cut(s) 329
BseGI GGATG 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMII CTCAG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 143
BshFI GGCC 1 cut(s) 155
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 329
BsnI GGCC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 260
Bsp143I GATC 2 cut(s) 125, 189
BspACI CCGC 3 cut(s) 75, 112, 129
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 208
BspPI GGATC 1 cut(s) 120
BssMI GATC 2 cut(s) 125, 189
Bst4CI ACNGT 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 195
BstF5I GGATG 1 cut(s) 104
BstKTI GATC 2 cut(s) 128, 192
BstMBI GATC 2 cut(s) 125, 189
BstMWI GCNNNNNNNGC 2 cut(s) 101, 137
BstV1I GCAGC 1 cut(s) 143
BstXI CCANNNNNNTGG 1 cut(s) 310
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 154, 295
CviAII CATG 3 cut(s) 72, 170, 210
CviJI RGCY 6 cut(s) 155, 174, 259, 273, 314, 328
CviKI_1 RGCY 6 cut(s) 155, 174, 259, 273, 314, 328
DdeI CTNAG 1 cut(s) 195
DpnI GATC 2 cut(s) 127, 191
DpnII GATC 2 cut(s) 125, 189
Eco47I GGWCC 1 cut(s) 295
Eco88I CYCGRG 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 295
FaeI CATG 3 cut(s) 75, 173, 213
FaiI YATR 6 cut(s) 73, 171, 211, 311, 345, 355
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 3 cut(s) 71, 169, 209
FauI CCCGC 2 cut(s) 68, 105
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 86
Hin1II CATG 3 cut(s) 75, 173, 213
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 2 cut(s) 143, 350
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 75
Hpy188I TCNGA 2 cut(s) 164, 181
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 137
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 3 cut(s) 75, 173, 213
Kzo9I GATC 2 cut(s) 125, 189
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 4 cut(s) 99, 182, 200, 278
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 2 cut(s) 30, 113
MalI GATC 2 cut(s) 127, 191
MboI GATC 2 cut(s) 125, 189
MluCI AATT 5 cut(s) 5, 43, 55, 96, 218
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 1 cut(s) 40
MseI TTAA 1 cut(s) 317
MspI CCGG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 101, 137
NdeII GATC 2 cut(s) 125, 189
NlaIII CATG 3 cut(s) 75, 173, 213
PaeR7I CTCGAG 1 cut(s) 260
PfeI GAWTC 1 cut(s) 350
PflMI CCANNNNNTGG 1 cut(s) 329
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PpuMI RGGWCCY 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 295
PspPI GGNCC 2 cut(s) 154, 295
PspPPI RGGWCCY 1 cut(s) 295
PspXI VCTCGAGB 1 cut(s) 260
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 125, 189
Sau96I GGNCC 2 cut(s) 154, 295
SchI GAGTC 1 cut(s) 137
SetI ASST 7 cut(s) 32, 201, 209, 261, 275, 300, 330
SfaNI GCATC 2 cut(s) 30, 113
Sfr274I CTCGAG 1 cut(s) 260
SinI GGWCC 1 cut(s) 295
SlaI CTCGAG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 5 cut(s) 5, 43, 55, 96, 218
SsiI CCGC 3 cut(s) 75, 112, 129
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 261
TasI AATT 5 cut(s) 5, 43, 55, 96, 218
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 1 cut(s) 57
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 342
TspGWI ACGGA 2 cut(s) 136, 235
TspRI CASTG 1 cut(s) 57
Van91I CCANNNNNTGG 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 2 cut(s) 5, 43
XhoI CTCGAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.